Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_L01
(825 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31400|VATA_MANSE Vacuolar ATP synthase catalytic subuni... 441 e-123
sp|Q29048|VATA1_PIG Vacuolar ATP synthase catalytic subunit... 439 e-123
sp|P38606|VATA1_HUMAN Vacuolar ATP synthase catalytic subun... 438 e-122
sp|P38607|VATA2_HUMAN Vacuolar ATP synthase catalytic subun... 437 e-122
sp|P31404|VATA1_BOVIN Vacuolar ATP synthase catalytic subun... 437 e-122
sp|Q27331|VATA2_DROME Vacuolar ATP synthase catalytic subun... 437 e-122
sp|P50516|VATA1_MOUSE Vacuolar ATP synthase catalytic subun... 435 e-122
sp|P48602|VATA1_DROME Vacuolar ATP synthase catalytic subun... 432 e-121
sp|O16109|VATA_AEDAE Vacuolar ATP synthase catalytic subuni... 420 e-117
sp|P49087|VATA_MAIZE Vacuolar ATP synthase catalytic subuni... 361 2e-99
>sp|P31400|VATA_MANSE Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit)
Length = 617
Score = 441 bits (1134), Expect = e-123
Identities = 214/263 (81%), Positives = 244/263 (92%)
Frame = +3
Query: 3 EALREISGRLAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPG 182
EALREISGRLAEMPA+SGYPAYLGARLASFYERAGRV+C+G PD R+GSV+IVGAVSPPG
Sbjct: 356 EALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPD-REGSVSIVGAVSPPG 414
Query: 183 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVA 362
GDFSDPVT+ATLGIVQVFWGLDKKLAQRKHFPSINWLIS+SKY RALDDFY+K+Y EFV
Sbjct: 415 GDFSDPVTAATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYEKNYPEFVP 474
Query: 363 LRTKTSEILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPF 542
LRTK EILQEEEDLSEIVQLVGK SLAE+DKITLEVA+L+KDDFLQQN YSSYD+FCPF
Sbjct: 475 LRTKVKEILQEEEDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPF 534
Query: 543 YKTVGMLKNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKISSMKFKDPVKDGK 722
YKTVGMLKN+I FYD +RHAVE+T+QSD+K+TW++IR+AM + +Y++SSMKFKDPVKDG+
Sbjct: 535 YKTVGMLKNIISFYDMSRHAVESTAQSDNKVTWNVIRDAMGNVLYQLSSMKFKDPVKDGE 594
Query: 723 EKILHDFDELYEEISNGFRNLED 791
KI DFD+L E++S FRNLED
Sbjct: 595 AKIKADFDQLLEDMSAAFRNLED 617
>sp|Q29048|VATA1_PIG Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform
(V-ATPase A subunit 1) (Vacuolar proton pump alpha
subunit 1) (V-ATPase 69 kDa subunit 1)
Length = 617
Score = 439 bits (1128), Expect = e-123
Identities = 214/263 (81%), Positives = 240/263 (91%)
Frame = +3
Query: 3 EALREISGRLAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPG 182
EALREISGRLAEMPA+SGYPAYLGARLASFYERAGRV+C+G P ER+GSVTIVGAVSPPG
Sbjct: 356 EALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVTIVGAVSPPG 414
Query: 183 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVA 362
GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPS+NWLIS+SKY RALD++YDKH+ EFV
Sbjct: 415 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHFTEFVP 474
Query: 363 LRTKTSEILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPF 542
LRTK EILQEEEDL+EIVQLVGK SLAE+DKITLEVA+LIKDDFLQQNGY+ YD+FCPF
Sbjct: 475 LRTKAKEILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPF 534
Query: 543 YKTVGMLKNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKISSMKFKDPVKDGK 722
YKTVGML NMI FYD AR AVETT+QSD+KITWS+IRE M + +YK+SSMKFKDPVKDG+
Sbjct: 535 YKTVGMLSNMIAFYDLARRAVETTAQSDNKITWSIIREHMGEILYKLSSMKFKDPVKDGE 594
Query: 723 EKILHDFDELYEEISNGFRNLED 791
KI D+ +L E++ N FR+LED
Sbjct: 595 AKIKADYAQLLEDVQNAFRSLED 617
>sp|P38606|VATA1_HUMAN Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform
(V-ATPase A subunit 1) (Vacuolar proton pump alpha
subunit 1) (V-ATPase 69 kDa subunit 1) (Isoform VA68)
Length = 617
Score = 438 bits (1126), Expect = e-122
Identities = 213/263 (80%), Positives = 240/263 (91%)
Frame = +3
Query: 3 EALREISGRLAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPG 182
EALREISGRLAEMPA+SGYPAYLGARLASFYERAGRV+C+G P ER+GSV+IVGAVSPPG
Sbjct: 356 EALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPG 414
Query: 183 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVA 362
GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPS+NWLIS+SKY RALD++YDKH+ EFV
Sbjct: 415 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHFTEFVP 474
Query: 363 LRTKTSEILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPF 542
LRTK EILQEEEDL+EIVQLVGK SLAE+DKITLEVA+LIKDDFLQQNGY+ YD+FCPF
Sbjct: 475 LRTKAKEILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPF 534
Query: 543 YKTVGMLKNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKISSMKFKDPVKDGK 722
YKTVGML NMI FYD AR AVETT+QSD+KITWS+IRE M D +YK+SSMKFKDP+KDG+
Sbjct: 535 YKTVGMLSNMIAFYDMARRAVETTAQSDNKITWSIIREHMGDILYKLSSMKFKDPLKDGE 594
Query: 723 EKILHDFDELYEEISNGFRNLED 791
KI D+ +L E++ N FR+LED
Sbjct: 595 AKIKSDYAQLLEDMQNAFRSLED 617
>sp|P38607|VATA2_HUMAN Vacuolar ATP synthase catalytic subunit A, osteoclast isoform
(V-ATPase A subunit 2) (Vacuolar proton pump alpha
subunit 2) (V-ATPase 69 kDa subunit 2) (Isoform HO68)
Length = 615
Score = 437 bits (1125), Expect = e-122
Identities = 212/263 (80%), Positives = 243/263 (92%)
Frame = +3
Query: 3 EALREISGRLAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPG 182
EALREISGRLAEMPA+SGYPAYLGARLASFYERAGRV+C+G PD R+GSV+IVGAVSPPG
Sbjct: 354 EALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPD-REGSVSIVGAVSPPG 412
Query: 183 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVA 362
GDFSDPVT+ATLGIVQVFWGLDKKLAQRKHFPSINWLIS+SKY RALDDFYDK++ EFV
Sbjct: 413 GDFSDPVTTATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNFPEFVP 472
Query: 363 LRTKTSEILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPF 542
LRTK EILQEEEDLSEIVQLVGK SLAE+DKITLEVA+L+KDDFLQQN YS YD+FCPF
Sbjct: 473 LRTKVKEILQEEEDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSPYDRFCPF 532
Query: 543 YKTVGMLKNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKISSMKFKDPVKDGK 722
YKTVGMLKNMI FYD +RHAVE+T+QS++KITW++IR++M + +Y++SSMKFKDPVKDG+
Sbjct: 533 YKTVGMLKNMIAFYDMSRHAVESTAQSENKITWNVIRDSMGNILYQLSSMKFKDPVKDGE 592
Query: 723 EKILHDFDELYEEISNGFRNLED 791
KI DF++L+E+I FRNLED
Sbjct: 593 AKIKADFEQLHEDIQQAFRNLED 615
>sp|P31404|VATA1_BOVIN Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform
(V-ATPase A subunit 1) (Vacuolar proton pump alpha
subunit 1) (V-ATPase 69 kDa subunit 1)
Length = 617
Score = 437 bits (1124), Expect = e-122
Identities = 213/263 (80%), Positives = 240/263 (91%)
Frame = +3
Query: 3 EALREISGRLAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPG 182
EALREISGRLAEMPA+SGYPAYLGARLASFYERAGRV+C+G P ER+GSV+IVGAVSPPG
Sbjct: 356 EALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPG 414
Query: 183 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVA 362
GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPS+NWLIS+SKY RALD++YDKH+ EFV
Sbjct: 415 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHFTEFVP 474
Query: 363 LRTKTSEILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPF 542
LRTK EILQEEEDL+EIVQLVGK SLAE+DKITLEVA+LIKDDFLQQNGY+ YD+FCPF
Sbjct: 475 LRTKAKEILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPF 534
Query: 543 YKTVGMLKNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKISSMKFKDPVKDGK 722
YKTVGML NMI FYD AR AVETT+QSD+KITWS+IRE M + +YK+SSMKFKDPVKDG+
Sbjct: 535 YKTVGMLSNMIAFYDMARRAVETTAQSDNKITWSIIREHMGEILYKLSSMKFKDPVKDGE 594
Query: 723 EKILHDFDELYEEISNGFRNLED 791
KI D+ +L E++ N FR+LED
Sbjct: 595 AKIKADYAQLLEDMQNAFRSLED 617
>sp|Q27331|VATA2_DROME Vacuolar ATP synthase catalytic subunit A isoform 2 (V-ATPase A
subunit 2) (Vacuolar proton pump alpha subunit 2)
(V-ATPase 69 kDa subunit 2)
Length = 614
Score = 437 bits (1124), Expect = e-122
Identities = 212/263 (80%), Positives = 243/263 (92%)
Frame = +3
Query: 3 EALREISGRLAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPG 182
EALREISGRLAEMP +SGYPAYLGARLASFYERAGRV+C+G P ER+GSV+IVGAVSPPG
Sbjct: 353 EALREISGRLAEMPRDSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPG 411
Query: 183 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVA 362
GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLIS+SKY RALDDFYDK++ EFV
Sbjct: 412 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNFPEFVP 471
Query: 363 LRTKTSEILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPF 542
LRTK EILQEEEDLSEIVQLVGK SLAE+DKITLEVA+L+KDDFLQQN YSSYD+FCPF
Sbjct: 472 LRTKVKEILQEEEDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPF 531
Query: 543 YKTVGMLKNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKISSMKFKDPVKDGK 722
YKTVGML+N+I FYD ARH+VE+T+QS++KITW++IREAM + +Y++SSMKFKDPVKDG+
Sbjct: 532 YKTVGMLRNIIDFYDMARHSVESTAQSENKITWNVIREAMGNIMYQLSSMKFKDPVKDGE 591
Query: 723 EKILHDFDELYEEISNGFRNLED 791
KI DF++L+E++ FRNLED
Sbjct: 592 AKIKADFEQLHEDLQQAFRNLED 614
>sp|P50516|VATA1_MOUSE Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform
(V-ATPase A subunit 1) (Vacuolar proton pump alpha
subunit 1) (V-ATPase 69 kDa subunit 1)
Length = 617
Score = 435 bits (1118), Expect = e-122
Identities = 212/263 (80%), Positives = 239/263 (90%)
Frame = +3
Query: 3 EALREISGRLAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPG 182
EALREISGRLAEMPA+SGYPAYLGARLASFYERAGRV+C+G P ER+GSV+IVGAVSPPG
Sbjct: 356 EALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPG 414
Query: 183 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVA 362
GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPS+NWLIS+SKY RALD++YDKH+ EFV
Sbjct: 415 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHFTEFVP 474
Query: 363 LRTKTSEILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPF 542
LRTK EILQEE DL+EIVQLVGK SLAE+DKITLEVA+LIKDDFLQQNGY+ YD+FCPF
Sbjct: 475 LRTKAKEILQEEGDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPF 534
Query: 543 YKTVGMLKNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKISSMKFKDPVKDGK 722
YKTVGML NMI FYD AR AVETT+QSD+KITWS+IRE M + +YK+SSMKFKDPVKDG+
Sbjct: 535 YKTVGMLSNMISFYDMARRAVETTAQSDNKITWSIIREHMGEILYKLSSMKFKDPVKDGE 594
Query: 723 EKILHDFDELYEEISNGFRNLED 791
KI D+ +L E++ N FR+LED
Sbjct: 595 AKIKADYAQLLEDMQNAFRSLED 617
>sp|P48602|VATA1_DROME Vacuolar ATP synthase catalytic subunit A isoform 1 (V-ATPase A
subunit 1) (Vacuolar proton pump alpha subunit 1)
(V-ATPase 69 kDa subunit 1)
Length = 614
Score = 432 bits (1110), Expect = e-121
Identities = 208/263 (79%), Positives = 241/263 (91%)
Frame = +3
Query: 3 EALREISGRLAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPG 182
EALREISGRLAEMPA+SGYPAYLGARLA+FYERAGRV+C+G P ER+GSV+IVGAVSPPG
Sbjct: 353 EALREISGRLAEMPADSGYPAYLGARLATFYERAGRVKCLGNP-EREGSVSIVGAVSPPG 411
Query: 183 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVA 362
GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLIS+SKY RALD++YDK+Y EFV
Sbjct: 412 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDEYYDKNYPEFVP 471
Query: 363 LRTKTSEILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPF 542
LRTK EILQEEEDLSEIVQLVGK SLAE+DK+TLEVA+L+KDDFLQQN YS YD+ CPF
Sbjct: 472 LRTKVKEILQEEEDLSEIVQLVGKASLAETDKVTLEVAKLLKDDFLQQNSYSPYDRVCPF 531
Query: 543 YKTVGMLKNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKISSMKFKDPVKDGK 722
YKTVGML+N++ FY+ ARHAVE+T+QSD+KITW+ IRE+M +Y++SSMKFKDPVKDG+
Sbjct: 532 YKTVGMLRNIMAFYETARHAVESTAQSDNKITWNTIRESMGGIMYQLSSMKFKDPVKDGE 591
Query: 723 EKILHDFDELYEEISNGFRNLED 791
+KI D+D+LYE++ FRNLED
Sbjct: 592 QKIKADYDQLYEDLQQAFRNLED 614
>sp|O16109|VATA_AEDAE Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit)
Length = 615
Score = 420 bits (1080), Expect = e-117
Identities = 209/264 (79%), Positives = 238/264 (90%), Gaps = 1/264 (0%)
Frame = +3
Query: 3 EALREISGRLAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPG 182
EALREISGRLAEMPA+SGYPAYLGARLASFYERAGRV+C+G P ER+GSV+IVGAVSPPG
Sbjct: 354 EALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPG 412
Query: 183 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVA 362
GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLIS+SKY RALDDFYDK++ EFV
Sbjct: 413 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNFQEFVP 472
Query: 363 LRTKTSEILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPF 542
K EILQEEEDLSEIVQLVGK SLAE+DKITLEVA+L+KDDFLQQN YS+YD+FCPF
Sbjct: 473 TAYKVKEILQEEEDLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSAYDRFCPF 532
Query: 543 YKTVG-MLKNMIHFYDQARHAVETTSQSDSKITWSMIREAMNDTIYKISSMKFKDPVKDG 719
YKTVG ML+NMI FYD ARHAVETT+QS++KITW++IR++M + +Y++SSMKFKDP +
Sbjct: 533 YKTVGRMLRNMIGFYDMARHAVETTAQSENKITWNVIRDSMGNILYQLSSMKFKDPGRMA 592
Query: 720 KEKILHDFDELYEEISNGFRNLED 791
K KI DFD+LYE++ FRNLED
Sbjct: 593 K-KIKADFDQLYEDLQQAFRNLED 615
>sp|P49087|VATA_MAIZE Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit)
Length = 561
Score = 361 bits (926), Expect = 2e-99
Identities = 175/264 (66%), Positives = 221/264 (83%), Gaps = 1/264 (0%)
Frame = +3
Query: 3 EALREISGRLAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPG 182
EALREISGRLAEMPA+SGYPAYL ARLASFYERAG+V+C+G PD R GSVTIVGAVSPPG
Sbjct: 297 EALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGSPD-RNGSVTIVGAVSPPG 355
Query: 183 GDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHYNEFVA 362
GDFSDPVTSATL IVQVFWGLDKKLAQRKHFPS+NWLIS+SKY++AL+ FY+K +F+
Sbjct: 356 GDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSKALESFYEKFDPDFID 415
Query: 363 LRTKTSEILQEEEDLSEIVQLVGKGSLAESDKITLEVARLIKDDFLQQNGYSSYDKFCPF 542
+RTK E+LQ E+DL+EIVQLVGK +LAESDKITLE A+L+++D+L QN ++ YDKFCPF
Sbjct: 416 IRTKAREVLQREDDLNEIVQLVGKDALAESDKITLETAKLLREDYLAQNAFTPYDKFCPF 475
Query: 543 YKTVGMLKNMIHFYDQARHAVETTSQSDS-KITWSMIREAMNDTIYKISSMKFKDPVKDG 719
YK+V M++N+IHF A AVE + +D KIT+S+I+ + D Y++ S KF+DP +G
Sbjct: 476 YKSVWMMRNIIHFNTLANQAVERAAGTDGHKITYSVIKHRLGDLFYRLVSQKFEDPA-EG 534
Query: 720 KEKILHDFDELYEEISNGFRNLED 791
+E ++ F +LY++++ GFRNLED
Sbjct: 535 EEALVGKFKKLYDDLTTGFRNLED 558
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,360,836
Number of Sequences: 369166
Number of extensions: 2238218
Number of successful extensions: 7800
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7443
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)