Planarian EST Database


Dr_sW_021_K20

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_021_K20
         (219 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q13627|DYR1A_HUMAN  Dual specificity tyrosine-phosphoryla...    30   1.3  
sp|Q61214|DYR1A_MOUSE  Dual specificity tyrosine-phosphoryla...    30   1.3  
sp|Q63470|DYR1A_RAT  Dual specificity tyrosine-phosphorylati...    30   1.3  
>sp|Q13627|DYR1A_HUMAN Dual specificity tyrosine-phosphorylation regulated kinase 1A
           (Protein kinase minibrain homolog) (MNBH) (HP86) (Dual
           specificity YAK1-related kinase)
          Length = 763

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 196 LTPQRNAAHGHTYTGRSMTFCRHHHHYH 113
           + PQ+NA H H   G S     HHHH+H
Sbjct: 591 VAPQQNALHHH--HGNSSHHHHHHHHHH 616
>sp|Q61214|DYR1A_MOUSE Dual specificity tyrosine-phosphorylation regulated kinase 1A
           (Protein kinase minibrain homolog) (MNBH) (MP86) (Dual
           specificity YAK1-related kinase)
          Length = 763

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 196 LTPQRNAAHGHTYTGRSMTFCRHHHHYH 113
           + PQ+NA H H   G S     HHHH+H
Sbjct: 591 VAPQQNALHHH--HGNSSHHHHHHHHHH 616
>sp|Q63470|DYR1A_RAT Dual specificity tyrosine-phosphorylation regulated kinase 1A
           (Protein kinase minibrain homolog) (MNBH) (RP86) (Dual
           specificity YAK1-related kinase)
          Length = 763

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 196 LTPQRNAAHGHTYTGRSMTFCRHHHHYH 113
           + PQ+NA H H   G S     HHHH+H
Sbjct: 591 VAPQQNALHHH--HGNSSHHHHHHHHHH 616
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,288,134
Number of Sequences: 369166
Number of extensions: 303151
Number of successful extensions: 1475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 68,354,980
effective HSP length: 44
effective length of database: 60,226,640
effective search space used: 1686345920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)