Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_K01
(359 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00512|K6PF_BACST 6-phosphofructokinase (Phosphofructoki... 29 2.9
sp|P52735|VAV2_HUMAN Vav-2 protein 29 3.8
sp|Q89AT8|NUOJ_BUCBP NADH-quinone oxidoreductase chain J (N... 29 3.8
sp|O13290|DYHC_SCHPO Dynein heavy chain, cytosolic (DYHC) 28 4.9
sp|Q9CZD3|SYG_MOUSE Glycyl-tRNA synthetase (Glycine--tRNA l... 28 8.4
>sp|P00512|K6PF_BACST 6-phosphofructokinase (Phosphofructokinase) (Phosphohexokinase)
Length = 319
Score = 29.3 bits (64), Expect = 2.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 156 YAMEIYVILAHTYFGLTGAELANLEISDVGEVKH 257
+ +E+Y + H Y GL + LE+ DVG++ H
Sbjct: 30 HGVEVYGVY-HGYAGLIAGNIKKLEVGDVGDIIH 62
>sp|P52735|VAV2_HUMAN Vav-2 protein
Length = 878
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 259 TCLTSPTSEISRFASSAPVRPKYVCASITYISMA*SNLSIRTSGPSSFYFCI*DPFIL 86
T L P R AS A R CAS + ++ LS + GPS+ ++ + P ++
Sbjct: 761 TTLKYPYKSRERSASRASSRSPASCASYNFSFLSPQGLSFASQGPSAPFWSVFTPRVI 818
>sp|Q89AT8|NUOJ_BUCBP NADH-quinone oxidoreductase chain J (NADH dehydrogenase I, chain J)
(NDH-1, chain J)
Length = 164
Score = 28.9 bits (63), Expect = 3.8
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +3
Query: 138 LMDRFDYAMEIYVILAHTYFGLTGAELANLEISDVGEVKHVVFSFQISVKNFKCFVIIIK 317
LM Y + +V + +F L A LE+ V+F F I + NFK + +
Sbjct: 25 LMYSLLYLILSFVFTSCVFFSLGATFAAALEVIIYAGAIMVLFVFFIMMFNFKKSTLYAE 84
Query: 318 RFIFILKNYYFI 353
+ IF NYY+I
Sbjct: 85 K-IFDKNNYYYI 95
>sp|O13290|DYHC_SCHPO Dynein heavy chain, cytosolic (DYHC)
Length = 4196
Score = 28.5 bits (62), Expect = 4.9
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 165 EIYVILAHTYFGLTGAELANLEISDVG-EVKHVVFSFQISVKNFKCFVIIIKRFIFILKN 341
EI V+L + LA E + +V ++ +++S+K+F V++ + FI + K+
Sbjct: 3679 EIVVLLKNLKEKHETIRLAYSESQSINRKVDELIRRYKLSIKSFLSVVVVFQHFISLKKS 3738
Query: 342 YYF 350
Y F
Sbjct: 3739 YSF 3741
>sp|Q9CZD3|SYG_MOUSE Glycyl-tRNA synthetase (Glycine--tRNA ligase) (GlyRS)
Length = 729
Score = 27.7 bits (60), Expect = 8.4
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = +3
Query: 117 KELGPDVLMDRFDYAMEIYVILAHTYFGLTGAELANLEISDVGEVKHVVFSFQISVKNFK 296
+E+ P V+ F +Y IL HT+ G E + FSF V FK
Sbjct: 558 EEVVPSVIEPSFGLGRIMYTILEHTFHVREGDE------------QRTFFSFPAVVAPFK 605
Query: 297 CFVI 308
C V+
Sbjct: 606 CSVL 609
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,801,374
Number of Sequences: 369166
Number of extensions: 723684
Number of successful extensions: 1891
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1889
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)