Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_J14
(317 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P33793|DPOL_VARV DNA polymerase 28 6.5
sp|P06856|DPOL_VACCV DNA polymerase >gi|118891|sp|P20509|DP... 28 6.5
sp|O57191|DPOL_VACCA DNA polymerase 28 6.5
sp|Q9NYU1|UGGG2_HUMAN UDP-glucose:glycoprotein glucosyltran... 28 8.5
>sp|P33793|DPOL_VARV DNA polymerase
Length = 1005
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 143 FPHYFYYVPYDVSWQS 96
FPHYFYYV D +QS
Sbjct: 34 FPHYFYYVVTDEIYQS 49
>sp|P06856|DPOL_VACCV DNA polymerase
sp|P20509|DPOL_VACCC DNA polymerase
Length = 1006
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 143 FPHYFYYVPYDVSWQS 96
FPHYFYYV D +QS
Sbjct: 34 FPHYFYYVVTDEIYQS 49
>sp|O57191|DPOL_VACCA DNA polymerase
Length = 1006
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 143 FPHYFYYVPYDVSWQS 96
FPHYFYYV D +QS
Sbjct: 34 FPHYFYYVVTDEIYQS 49
>sp|Q9NYU1|UGGG2_HUMAN UDP-glucose:glycoprotein glucosyltransferase 2 precursor
(UDP-glucose ceramide glucosyltransferase-like 1)
(UDP--Glc:glycoprotein glucosyltransferase 2) (HUGT2)
Length = 1516
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 81 STMQETLPRNIIWNIIKIMRKLKNKRKSKAS 173
S +Q T P IW+I+ I K +RK+ AS
Sbjct: 578 SVLQNTFPHANIWDILGIHSKYDEERKAGAS 608
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,404,862
Number of Sequences: 369166
Number of extensions: 469756
Number of successful extensions: 803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 68,354,980
effective HSP length: 74
effective length of database: 54,684,590
effective search space used: 1695222290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)