Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_J05
(896 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 246 5e-65
sp|P61277|CATK_MACMU Cathepsin K precursor >gi|47117667|sp|... 229 6e-60
sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (C... 229 8e-60
sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein) 228 2e-59
sp|Q9GLE3|CATK_PIG Cathepsin K precursor 228 2e-59
sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine protei... 225 1e-58
sp|Q9JIA9|CATR_MOUSE Cathepsin R precursor 225 1e-58
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 224 2e-58
sp|Q9R014|CATJ_MOUSE Cathepsin J precursor (Cathepsin P) (C... 224 2e-58
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 224 3e-58
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 246 bits (629), Expect = 5e-65
Identities = 118/271 (43%), Positives = 167/271 (61%), Gaps = 2/271 (0%)
Frame = +1
Query: 58 WKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADLTNEEF 237
W +K ++ KEY D+ RR IWE+N+++IQ+HNL DLG T+TLGLNQF D+T EEF
Sbjct: 21 WHQWKRMYNKEYNGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEF 80
Query: 238 RSKYFSKNLMSRSQINSKFVMPYKT--KLNDDEVDWRKKGVVTPVKNQYGCNAGWAFAAT 411
++KY ++ MSR+ +PY+ + D++DWR+ G VT VK+Q C + WAF+ T
Sbjct: 81 KAKYLTE--MSRASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSCWAFSTT 138
Query: 412 GSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYYKPYGMNNEETYPYF 591
G+ EG+Y +SFSE+QL+DCS +GN+GC GG +N++ Y K +G+ E +YPY
Sbjct: 139 GTMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGLMENAYQYLKQFGLETESSYPYT 198
Query: 592 GIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLPSFQFYREGIY 771
++ +C+YN +A V + V +E+++ V A P +D F YR GIY
Sbjct: 199 AVEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVDVE-SDFMMYRSGIY 257
Query: 772 NDPTCSKTSPNHAVLIVGYGESEGEDYWIVK 864
TCS NHAVL VGYG G DYWIVK
Sbjct: 258 QSQTCSPLRVNHAVLAVGYGTQGGTDYWIVK 288
>sp|P61277|CATK_MACMU Cathepsin K precursor
sp|P61276|CATK_MACFA Cathepsin K precursor
Length = 329
Score = 229 bits (585), Expect = 6e-60
Identities = 118/276 (42%), Positives = 166/276 (60%), Gaps = 3/276 (1%)
Frame = +1
Query: 46 LNNEWKAFKLLFKKEYEP-IDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADL 222
L+ W+ +K +K+Y +DE+ RRLIWE+NL+YI HNLEA LG HT+ L +N D+
Sbjct: 22 LDTHWELWKKTHRKQYNSKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDM 81
Query: 223 TNEEFRSKYFSKNL-MSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCNAGWA 399
TNEE K + S S+ N +P D VD+RKKG VTPVKNQ C + WA
Sbjct: 82 TNEEVVQKMTGLKVPASHSRSNDTLYIPDWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWA 141
Query: 400 FAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYY-KPYGMNNEE 576
F++ G+ EG+ +TG L++ S + L+DC N GC GG N+F Y K G+++E+
Sbjct: 142 FSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSED 199
Query: 577 TYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLPSFQFY 756
YPY G ++ C YN A + ++ NE + AV+ GP++ IDASL SFQFY
Sbjct: 200 AYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 259
Query: 757 REGIYNDPTCSKTSPNHAVLIVGYGESEGEDYWIVK 864
+G+Y D +C+ + NHAVL VGYG +G +WI+K
Sbjct: 260 SKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIK 295
>sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (Cathepsin X) (Cathepsin O2)
Length = 329
Score = 229 bits (584), Expect = 8e-60
Identities = 117/276 (42%), Positives = 167/276 (60%), Gaps = 3/276 (1%)
Frame = +1
Query: 46 LNNEWKAFKLLFKKEYE-PIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADL 222
L+ W+ +K +K+Y +DE+ RRLIWE+NL+YI HNLEA LG HT+ L +N D+
Sbjct: 22 LDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDM 81
Query: 223 TNEEFRSKYFSKNL-MSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCNAGWA 399
T+EE K + +S S+ N +P D VD+RKKG VTPVKNQ C + WA
Sbjct: 82 TSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWA 141
Query: 400 FAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYY-KPYGMNNEE 576
F++ G+ EG+ +TG L++ S + L+DC N GC GG N+F Y K G+++E+
Sbjct: 142 FSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSED 199
Query: 577 TYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLPSFQFY 756
YPY G ++ C YN A + ++ NE + AV+ GP++ IDASL SFQFY
Sbjct: 200 AYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 259
Query: 757 REGIYNDPTCSKTSPNHAVLIVGYGESEGEDYWIVK 864
+G+Y D +C+ + NHAVL VGYG +G +WI+K
Sbjct: 260 SKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIK 295
>sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein)
Length = 329
Score = 228 bits (581), Expect = 2e-59
Identities = 123/291 (42%), Positives = 172/291 (59%), Gaps = 3/291 (1%)
Frame = +1
Query: 1 VVSHATLHQPTINAQLNNEWKAFKLLFKKEYEP-IDEVVRRLIWEENLRYIQKHNLEADL 177
VVS A LH I L+ +W+ +K + K+Y +DE+ RRLIWE+NL++I HNLEA L
Sbjct: 11 VVSFA-LHPEEI---LDTQWELWKKTYSKQYNSKVDEISRRLIWEKNLKHISIHNLEASL 66
Query: 178 GKHTFTLGLNQFADLTNEEFRSKYFSKNLM-SRSQINSKFVMPYKTKLNDDEVDWRKKGV 354
G HT+ L +N D+T+EE K + SRS N +P D +D+RKKG
Sbjct: 67 GVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSRSHSNDTLYIPDWEGRTPDSIDYRKKGY 126
Query: 355 VTPVKNQYGCNAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDN 534
VTPVKNQ C + WAF++ G+ EG+ +TG L++ S + L+DC N GC GG N
Sbjct: 127 VTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NYGCGGGYMTN 184
Query: 535 SFNYY-KPYGMNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGP 711
+F Y + G+++E+ YPY G + C YN A + ++ NE + AV+ GP
Sbjct: 185 AFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGP 244
Query: 712 LTAIIDASLPSFQFYREGIYNDPTCSKTSPNHAVLIVGYGESEGEDYWIVK 864
++ IDASL SFQFY +G+Y D CS + NHAVL VGYG +G +WI+K
Sbjct: 245 VSVAIDASLTSFQFYSKGVYYDENCSSDNVNHAVLAVGYGIQKGNKHWIIK 295
>sp|Q9GLE3|CATK_PIG Cathepsin K precursor
Length = 330
Score = 228 bits (580), Expect = 2e-59
Identities = 115/276 (41%), Positives = 167/276 (60%), Gaps = 3/276 (1%)
Frame = +1
Query: 46 LNNEWKAFKLLFKKEYEP-IDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADL 222
L+ +W+ +K ++K+Y +DE+ RRLIWE+NL++I HNLEA LG HT+ L +N D+
Sbjct: 23 LDTQWELWKKTYRKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDM 82
Query: 223 TNEEFRSKYFSKNLM-SRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCNAGWA 399
T+EE K + S S+ N +P D +D+RKKG VTPVKNQ C + WA
Sbjct: 83 TSEEVVQKMTGLKVPPSHSRSNDTLYIPDWEGRTPDSIDYRKKGYVTPVKNQGQCGSCWA 142
Query: 400 FAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYY-KPYGMNNEE 576
F++ G+ EG+ +TG L++ S + L+DC N GC GG N+F Y K G+++E+
Sbjct: 143 FSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSED 200
Query: 577 TYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLPSFQFY 756
YPY G + C YN A + ++ NE + AV+ GP++ IDASL SFQFY
Sbjct: 201 AYPYVGQDENCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 260
Query: 757 REGIYNDPTCSKTSPNHAVLIVGYGESEGEDYWIVK 864
+G+Y D C+ + NHAVL VGYG +G+ +WI+K
Sbjct: 261 SKGVYYDENCNSDNLNHAVLAVGYGIQKGKKHWIIK 296
>sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine proteinase 1) [Contains: Cathepsin
L heavy chain; Cathepsin L light chain]
Length = 341
Score = 225 bits (574), Expect = 1e-58
Identities = 121/281 (43%), Positives = 168/281 (59%), Gaps = 11/281 (3%)
Frame = +1
Query: 55 EWKAFKLLFKKEYEP-IDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADLTNE 231
EW FKL +K Y+ +E R I+ EN I KHN GK +F L +N++ADL +
Sbjct: 28 EWHTFKLEHRKNYQDETEERFRLKIFNENKHKIAKHNQRFAEGKVSFKLAVNKYADLLHH 87
Query: 232 EFRSKYFSKNLMSRSQINSK--------FVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCN 387
EFR N Q+ + F+ P L VDWR KG VT VK+Q C
Sbjct: 88 EFRQLMNGFNYTLHKQLRAADESFKGVTFISPAHVTL-PKSVDWRTKGAVTAVKDQGHCG 146
Query: 388 AGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYYKPY-GM 564
+ WAF++TG+ EG++ ++GVL+S SE+ L+DCS YGN+GC GG DN+F Y K G+
Sbjct: 147 SCWAFSSTGALEGQHFRKSGVLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYIKDNGGI 206
Query: 565 NNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLPS 744
+ E++YPY I D C +N +V A F D+ + +E ++A AV+ GP++ IDAS S
Sbjct: 207 DTEKSYPYEAIDDSCHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHES 266
Query: 745 FQFYREGIYNDPTCSKTSPNHAVLIVGYGESE-GEDYWIVK 864
FQFY EG+YN+P C + +H VL+VG+G E GEDYW+VK
Sbjct: 267 FQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVK 307
>sp|Q9JIA9|CATR_MOUSE Cathepsin R precursor
Length = 334
Score = 225 bits (574), Expect = 1e-58
Identities = 116/285 (40%), Positives = 174/285 (61%), Gaps = 6/285 (2%)
Frame = +1
Query: 28 PTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLN 207
P +++ L+ EW+ +K+ + K Y +E ++R++WEE L+ I+ HN E LGK+ FT+ +N
Sbjct: 19 PVLDSSLDAEWQDWKIKYNKSYSLKEEKLKRVVWEEKLKMIKLHNRENSLGKNGFTMKMN 78
Query: 208 QFADLTNEEFRSKYFSKNLMSRSQINSKFVMPYKT-KLNDDEVDWRKKGVVTPVKNQYGC 384
+F D T+EEFR ++ + + K +M + + VDWRKKG VTPV+ Q C
Sbjct: 79 EFGDQTDEEFRKMMIEISVWTHRE--GKSIMKREAGSILPKFVDWRKKGYVTPVRRQGDC 136
Query: 385 NAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNY-YKPYG 561
+A WAFA TG+ E + QTG L S + L+DCS GN+GC GG N+F Y G
Sbjct: 137 DACWAFAVTGAIEAQAIWQTGKLTPLSVQNLVDCSKPQGNNGCLGGDTYNAFQYVLHNGG 196
Query: 562 MNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASLP 741
+ +E TYPY G C+YN + A + F+ + ++ +I + AAV+ GP+TA IDAS
Sbjct: 197 LESEATYPYEGKDGPCRYNPKNSKAEITGFVSLPQSEDI-LMAAVATIGPITAGIDASHE 255
Query: 742 SFQFYREGIYNDPTCSKTSPNHAVLIVGYG----ESEGEDYWIVK 864
SF+ Y+ GIY++P CS + H VL+VGYG E++G YW++K
Sbjct: 256 SFKNYKGGIYHEPNCSSDTVTHGVLVVGYGFKGIETDGNHYWLIK 300
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 224 bits (572), Expect = 2e-58
Identities = 119/292 (40%), Positives = 170/292 (58%), Gaps = 5/292 (1%)
Frame = +1
Query: 4 VSHATLHQPTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGK 183
++ ATL T + L +W +K + + Y +E RR +WE+N++ I+ HN E GK
Sbjct: 14 IASATL---TFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGK 70
Query: 184 HTFTLGLNQFADLTNEEFRSKYFSKNLMSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTP 363
H+FT+ +N F D+T+EEFR +R K VDWR+KG VTP
Sbjct: 71 HSFTMAMNAFGDMTSEEFRQ--VMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTP 128
Query: 364 VKNQYGCNAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFN 543
VKNQ C + WAF+ATG+ EG+ +TG L+S SE+ L+DCS GN GC GG D +F
Sbjct: 129 VKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQ 188
Query: 544 YYKPY-GMNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTA 720
Y + G+++EE+YPY ++ CKYN +A+ F+D+ + E + AV+ GP++
Sbjct: 189 YVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISV 247
Query: 721 IIDASLPSFQFYREGIYNDPTCSKTSPNHAVLIVGYG----ESEGEDYWIVK 864
IDA SF FY+EGIY +P CS +H VL+VGYG ES+ YW+VK
Sbjct: 248 AIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVK 299
>sp|Q9R014|CATJ_MOUSE Cathepsin J precursor (Cathepsin P) (Catlrp-p)
Length = 333
Score = 224 bits (572), Expect = 2e-58
Identities = 119/293 (40%), Positives = 173/293 (59%), Gaps = 5/293 (1%)
Frame = +1
Query: 1 VVSHATLHQPTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLG 180
V S A H P ++A EWK +K + K Y P +E +RR +WEEN+R I+ HN E LG
Sbjct: 14 VASGAQAHDPKLDA----EWKDWKTKYAKSYSP-EEALRRAVWEENMRMIKLHNKENSLG 68
Query: 181 KHTFTLGLNQFADLTNEEFRSKYFSKNLMSRSQINSKFVMPYKTKLNDDEVDWRKKGVVT 360
K+ FT+ +N+F D T+EEFR N+ + + + + D DWR++G VT
Sbjct: 69 KNNFTMKMNKFGDQTSEEFRKSI--DNIPIPAAMTDPHAQNHVSIGLPDYKDWREEGYVT 126
Query: 361 PVKNQYGCNAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSF 540
PV+NQ C + WAFAA G+ EG+ +TG L S + L+DCS GN GC+ G+ +F
Sbjct: 127 PVRNQGKCGSCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVGNKGCQSGTAHQAF 186
Query: 541 NY-YKPYGMNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLT 717
Y K G+ E TYPY G C+Y + + A++ ++++ NE+ + AV++ GP++
Sbjct: 187 EYVLKNKGLEAEATYPYEGKDGPCRYRSENASANITDYVNLP-PNELYLWVAVASIGPVS 245
Query: 718 AIIDASLPSFQFYREGIYNDPTCSKTSPNHAVLIVGYGE----SEGEDYWIVK 864
A IDAS SF+FY GIY +P CS NHAVL+VGYG +G +YW++K
Sbjct: 246 AAIDASHDSFRFYNGGIYYEPNCSSYFVNHAVLVVGYGSEGDVKDGNNYWLIK 298
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 224 bits (570), Expect = 3e-58
Identities = 118/286 (41%), Positives = 165/286 (57%), Gaps = 7/286 (2%)
Frame = +1
Query: 28 PTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLN 207
P + L+ +W +K ++ Y +E RR +WE+N++ I+ HN E GKH FT+ +N
Sbjct: 19 PKFDQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMN 78
Query: 208 QFADLTNEEFRSKY--FSKNLMSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYG 381
F D+TNEEFR F + ++ F P L VDWRKKG VTPVKNQ
Sbjct: 79 AFGDMTNEEFRQMMGCFRNQKFRKGKV---FREPLFLDL-PKSVDWRKKGYVTPVKNQKQ 134
Query: 382 CNAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYYKPY- 558
C + WAF+ATG+ EG+ +TG L+S SE+ L+DCS GN GC GG +F Y K
Sbjct: 135 CGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENG 194
Query: 559 GMNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAIIDASL 738
G+++EE+YPY + + CKY + +A+ F VA E + AV+ GP++ +DA
Sbjct: 195 GLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGH 254
Query: 739 PSFQFYREGIYNDPTCSKTSPNHAVLIVGYG----ESEGEDYWIVK 864
SFQFY+ GIY +P CS + +H VL+VGYG S YW+VK
Sbjct: 255 SSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVK 300
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,231,315
Number of Sequences: 369166
Number of extensions: 1913753
Number of successful extensions: 6006
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5533
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)