Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_J04
(416 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q924T7|RNF31_MOUSE RING finger protein 31 37 0.021
sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-betwe... 35 0.047
sp|Q5QJC4|DCR1A_CHICK DNA cross-link repair 1A protein (chS... 32 0.40
sp|Q9UGI0|TRABD_HUMAN TRABID protein (Zinc finger Ran-bindi... 31 0.89
sp|Q8IY57|YAF2_HUMAN YY1-associated factor 2 31 0.89
sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplast ... 31 1.2
sp|P27398|CAND_DROME Calpain D (Calcium-activated neutral p... 30 1.5
sp|P49792|RBP2_HUMAN Ran-binding protein 2 (RanBP2) (Nuclea... 30 2.0
sp|O26057|DNAA_HELPY Chromosomal replication initiator prot... 30 2.0
sp|Q5EG55|RYBP_BRARE RING1 and YY1-binding protein (Death e... 30 2.0
>sp|Q924T7|RNF31_MOUSE RING finger protein 31
Length = 1066
Score = 36.6 bits (83), Expect = 0.021
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 242 TENLRRDDDGEKWICLQCTFANESANLNCIICEHAR 349
T L + ++W C CTF NE+A + C ICE R
Sbjct: 336 TGGLEPEPARDQWACQSCTFENEAAAVLCAICERPR 371
>sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-between-RING-finger
ubiquitin-associated domain protein)
Length = 1072
Score = 35.4 bits (80), Expect = 0.047
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 242 TENLRRDDDGEKWICLQCTFANESANLNCIICEHAR 349
T L D +W C CTF NE+A + C ICE R
Sbjct: 342 TGGLEPDLARGRWACQSCTFENEAAAVLCSICERPR 377
Score = 30.4 bits (67), Expect = 1.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 278 WICLQCTFANESANLNCIIC 337
W C+ CTF N S C++C
Sbjct: 413 WYCIHCTFCNSSPGWVCVMC 432
>sp|Q5QJC4|DCR1A_CHICK DNA cross-link repair 1A protein (chSNM1A)
Length = 972
Score = 32.3 bits (72), Expect = 0.40
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Frame = +2
Query: 131 ANSIGEFLF-------ERKMKCQEALSKSIAVPEPIKHFVAQRPTENLRRDDDGE 274
A+ GE+L ERKM C A +KS P P++ A++P++NL+ + E
Sbjct: 165 ASRAGEYLVNSTANTVERKMTCSTA-AKSSCFPSPVEDSQAEKPSKNLKNVPNNE 218
>sp|Q9UGI0|TRABD_HUMAN TRABID protein (Zinc finger Ran-binding domain containing 1)
Length = 708
Score = 31.2 bits (69), Expect = 0.89
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 272 EKWICLQCTFANESANLNCIICEHAR 349
+ W C CT+ N + C++C+H R
Sbjct: 151 QHWTCSVCTYENWAKAKRCVVCDHPR 176
Score = 28.5 bits (62), Expect = 5.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 269 GEKWICLQCTFANESANLNCIICEHAR 349
G KW C CT+ N + + C +C R
Sbjct: 5 GIKWACEYCTYENWPSAIKCTMCRAQR 31
>sp|Q8IY57|YAF2_HUMAN YY1-associated factor 2
Length = 180
Score = 31.2 bits (69), Expect = 0.89
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 236 RPTENLRRDDDGEKWICLQCTFANESANLNCIICE 340
RP + + D W C CTF N + C++C+
Sbjct: 9 RPKRHAKPSSDEGYWDCSVCTFRNSAEAFKCMMCD 43
>sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplast precursor (VARIEGATED 3
protein)
Length = 758
Score = 30.8 bits (68), Expect = 1.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 254 RRDDDGEKWICLQCTFANESANLNCIICEHAR 349
+R G +W C QC F N N+ C+ C+ R
Sbjct: 305 KRQLTGSEWECPQCDFYNYGRNVACLRCDCKR 336
>sp|P27398|CAND_DROME Calpain D (Calcium-activated neutral proteinase D) (CANP D) (Small
optic lobes protein)
Length = 1594
Score = 30.4 bits (67), Expect = 1.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 221 HFVAQRPTENLRRDDDGEKWICLQCTFANESANLNCIIC 337
H + Q+ E R E W C +CT N S + C++C
Sbjct: 693 HHLQQQQAEAPR----DEPWTCKKCTLVNYSTAMACVVC 727
Score = 28.5 bits (62), Expect = 5.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 272 EKWICLQCTFANESANLNCIICEHAR 349
+KW C CT+ N +A++ C IC R
Sbjct: 929 KKWQCPACTYDNCAASVVCDICSSPR 954
>sp|P49792|RBP2_HUMAN Ran-binding protein 2 (RanBP2) (Nuclear pore complex protein Nup358)
(Nucleoporin Nup358) (358 kDa nucleoporin) (P270)
Length = 3224
Score = 30.0 bits (66), Expect = 2.0
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +2
Query: 170 KCQEALSKSIAVPEPIKHFVAQRPTEN-----LRRDDDGEKWICLQCTFANESANLNCII 334
+C +++ A+ P +++ P +R+ +W C C NES++L C+
Sbjct: 1748 QCPSKQNQTTAISTPASSEISKAPKSGFEGMFIRKG----QWDCSVCCVQNESSSLKCVA 1803
Query: 335 CEHAR 349
C+ ++
Sbjct: 1804 CDASK 1808
>sp|O26057|DNAA_HELPY Chromosomal replication initiator protein dnaA
Length = 457
Score = 30.0 bits (66), Expect = 2.0
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 164 KMKCQEALSKSIAVPEPIKHFVAQRPTENLRRDDDGEKWICLQCTFANESANLN 325
K KCQ I +PE + ++AQ ++N+R+ + I + N S +LN
Sbjct: 283 KQKCQ---LNQITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNASIDLN 333
>sp|Q5EG55|RYBP_BRARE RING1 and YY1-binding protein (Death effector domain-associated
factor) (DED-associated factor)
Length = 257
Score = 30.0 bits (66), Expect = 2.0
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 236 RPTENLRRDDDGEKWICLQCTFANESANLNCIICE 340
RP + D W C CTF N + C IC+
Sbjct: 9 RPKRQAKPTADNGFWDCSVCTFRNSAEAFKCSICD 43
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,938,289
Number of Sequences: 369166
Number of extensions: 911502
Number of successful extensions: 2325
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2325
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)