Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_I19
(455 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a 154 1e-37
sp|P61246|RS3A_FELCA 40S ribosomal protein S3a 152 4e-37
sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a 152 4e-37
sp|P49242|RS3A_RAT 40S ribosomal protein S3a (V-fos transfo... 151 6e-37
sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a 151 7e-37
sp|P49395|RS3A_APLCA 40S ribosomal protein S3a (Lysine-rich... 150 1e-36
sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a) 148 5e-36
sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a (V-fos trans... 147 8e-36
sp|P52813|RS3A_ANOGA 40S ribosomal protein S3a (C3 protein) 147 1e-35
sp|P55830|RS3A_DROME 40S ribosomal protein S3a (C3 protein) 143 2e-34
>sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a
Length = 257
Score = 154 bits (388), Expect = 1e-37
Identities = 77/142 (54%), Positives = 102/142 (71%)
Frame = +2
Query: 2 TTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISS 181
T IE VKTTD + LRVFVIAFTKK+ Q+KK +Y + +I+ IR M I E++
Sbjct: 117 TLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTG 176
Query: 182 CDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSATA 361
CD+KEVV KL DSIGKDI K CS ++PLQ+ +RKVK+I++PK+DL +L DLHGDS T
Sbjct: 177 CDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGDSIT- 235
Query: 362 ITSTGEIIERPDGHEPPIQTSV 427
+ + GE ++RPD +EPP+Q V
Sbjct: 236 VGADGEKVDRPDDYEPPVQQEV 257
>sp|P61246|RS3A_FELCA 40S ribosomal protein S3a
Length = 260
Score = 152 bits (383), Expect = 4e-37
Identities = 75/146 (51%), Positives = 104/146 (71%), Gaps = 4/146 (2%)
Frame = +2
Query: 2 TTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISS 181
T IE DVKTTD + LR+F + FTKK + Q++K +YAQ QQ++ IR M E++ E+ +
Sbjct: 115 TMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQT 174
Query: 182 CDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSATA 361
D+KEVV KL DSIGKDI K C I+PL D VRKVK+++KPK +L KLM+LHG+ +++
Sbjct: 175 NDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSS 234
Query: 362 ITSTGE----IIERPDGHEPPIQTSV 427
+TG+ +ER DG+EPP+Q SV
Sbjct: 235 GKATGDETGAKVERADGYEPPVQESV 260
>sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a
Length = 264
Score = 152 bits (383), Expect = 4e-37
Identities = 75/146 (51%), Positives = 104/146 (71%), Gaps = 4/146 (2%)
Frame = +2
Query: 2 TTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISS 181
T IE DVKTTD + LR+F + FTKK + Q++K +YAQ QQ++ IR M E++ E+ +
Sbjct: 119 TMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQT 178
Query: 182 CDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSATA 361
D+KEVV KL DSIGKDI K C I+PL D VRKVK+++KPK +L KLM+LHG+ +++
Sbjct: 179 NDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSS 238
Query: 362 ITSTGE----IIERPDGHEPPIQTSV 427
+TG+ +ER DG+EPP+Q SV
Sbjct: 239 GKATGDETGAKVERADGYEPPVQESV 264
>sp|P49242|RS3A_RAT 40S ribosomal protein S3a (V-fos transformation effector protein)
[Contains: 40S ribosomal protein S3b]
Length = 264
Score = 151 bits (382), Expect = 6e-37
Identities = 75/146 (51%), Positives = 103/146 (70%), Gaps = 4/146 (2%)
Frame = +2
Query: 2 TTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISS 181
T IE DVKTTD + LR+F + FTKK + Q++K +YAQ QQ++ IR M E++ E+ +
Sbjct: 119 TMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQT 178
Query: 182 CDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSATA 361
D+KEVV KL DSIGKDI K C I+PL D VRKVK+++KPK +L KLM+LHG+ ++
Sbjct: 179 NDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSS 238
Query: 362 ITSTGE----IIERPDGHEPPIQTSV 427
+TG+ +ER DG+EPP+Q SV
Sbjct: 239 GKTTGDETGAKVERADGYEPPVQESV 264
>sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a
Length = 264
Score = 151 bits (381), Expect = 7e-37
Identities = 76/146 (52%), Positives = 101/146 (69%), Gaps = 4/146 (2%)
Frame = +2
Query: 2 TTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISS 181
T IE DVKTTD + LR+F + FTKK + Q++K +YAQ QQ++ IR M E++ E+ +
Sbjct: 119 TMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQT 178
Query: 182 CDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSAT- 358
D+KEVV KL DSIGKDI K C I+PL D VRKVK+++KPK +L KLM+LHG+ +
Sbjct: 179 NDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSS 238
Query: 359 ---AITSTGEIIERPDGHEPPIQTSV 427
A TG +ER DG+EPP+Q SV
Sbjct: 239 GKAAGDETGAKVERADGYEPPVQESV 264
>sp|P49395|RS3A_APLCA 40S ribosomal protein S3a (Lysine-rich protein KRP-A)
Length = 265
Score = 150 bits (380), Expect = 1e-36
Identities = 79/147 (53%), Positives = 103/147 (70%), Gaps = 5/147 (3%)
Frame = +2
Query: 2 TTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISS 181
T IE DVKTTD + LRVF I FTKK + Q+KK YAQ Q+K+IR M E+++ E+SS
Sbjct: 119 TLIEANVDVKTTDGYLLRVFAIGFTKKRNNQVKKTCYAQHAQVKAIRKKMVEIVSREVSS 178
Query: 182 CDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSAT- 358
D+KEVV KL DSIGKDI K C I+PL D + KVKV++KPK D+ KLM+LHG+ +T
Sbjct: 179 NDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTT 238
Query: 359 ---AITST-GEIIERPDGHEPPIQTSV 427
+TS GE ++R DG+EPP+ +V
Sbjct: 239 TSKGVTSEGGEKVDRVDGYEPPVLQNV 265
>sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a)
Length = 264
Score = 148 bits (374), Expect = 5e-36
Identities = 75/146 (51%), Positives = 100/146 (68%), Gaps = 4/146 (2%)
Frame = +2
Query: 2 TTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISS 181
T IE DVKTTD + LR+F + FTKK + Q++K +YAQ QQ++ IR M E++ E +
Sbjct: 119 TMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTGEFQT 178
Query: 182 CDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSATA 361
D+KEVV KL DSIGKDI K C I+PL D VRKVK+++KPK +L KLM+LHG+ A
Sbjct: 179 NDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGA 238
Query: 362 ITSTGE----IIERPDGHEPPIQTSV 427
+G+ +ER DG+EPP+Q SV
Sbjct: 239 GKPSGDEAGAKVERADGYEPPVQESV 264
>sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a (V-fos transformation effector protein)
Length = 266
Score = 147 bits (372), Expect = 8e-36
Identities = 74/148 (50%), Positives = 100/148 (67%), Gaps = 6/148 (4%)
Frame = +2
Query: 2 TTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISS 181
T IE DVKTTD + LR+F + FTKK + Q++K +YAQ QQ++ IR M E++ E+ +
Sbjct: 119 TMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREVQT 178
Query: 182 CDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSATA 361
D+KEVV KL DS+GKDI K C I+PL D VRKVK+++KPK +L KLM+LHG+
Sbjct: 179 NDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAG 238
Query: 362 ITS------TGEIIERPDGHEPPIQTSV 427
+ TG +ER DG+EPPIQ +V
Sbjct: 239 GAAKASGDDTGAKVERADGYEPPIQETV 266
>sp|P52813|RS3A_ANOGA 40S ribosomal protein S3a (C3 protein)
Length = 269
Score = 147 bits (371), Expect = 1e-35
Identities = 79/148 (53%), Positives = 98/148 (66%), Gaps = 6/148 (4%)
Frame = +2
Query: 2 TTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISS 181
T IEC DVKTTD F LRVF I FT K S +K YAQ QIK+IR M +I EI+S
Sbjct: 122 TLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITS 181
Query: 182 CDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSA-- 355
D+K VV+KL DSI KDI K C ++PL D +RKVKV++KP+ DL+ LM+LHGD
Sbjct: 182 TDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGDGGGK 241
Query: 356 TAITSTGE----IIERPDGHEPPIQTSV 427
A STG ++ RP+G+EPP+Q SV
Sbjct: 242 AAEVSTGAASGVVVVRPEGYEPPVQASV 269
>sp|P55830|RS3A_DROME 40S ribosomal protein S3a (C3 protein)
Length = 268
Score = 143 bits (361), Expect = 2e-34
Identities = 68/147 (46%), Positives = 96/147 (65%), Gaps = 5/147 (3%)
Frame = +2
Query: 2 TTIECFADVKTTDNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISS 181
T IE + KT D + LRVF I FT K +K YAQ Q++ IR M ++I E+S
Sbjct: 122 TLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSG 181
Query: 182 CDIKEVVKKLCIDSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSA-- 355
D+K++V KL +DSI KDI K C I+PL D +RKVKV++KP+ D++KL++LHGD
Sbjct: 182 ADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGK 241
Query: 356 ---TAITSTGEIIERPDGHEPPIQTSV 427
++S G +I+RP+G+EPP+Q SV
Sbjct: 242 SVEAVVSSEGAVIDRPEGYEPPVQESV 268
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,102,175
Number of Sequences: 369166
Number of extensions: 930148
Number of successful extensions: 2330
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2314
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)