Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_I08
(455 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5RE33|DP1_PONPY Polyposis locus protein 1 homolog 76 4e-14
sp|Q60870|DP1_MOUSE Polyposis locus protein 1 homolog (TB2 ... 73 3e-13
sp|Q9LR09|A22G_ARATH Putative HVA22-like protein g (AtHVA22g) 64 1e-10
sp|Q8LEM6|A22H_ARATH HVA22-like protein h (AtHVA22h) 61 1e-09
sp|Q6NLY8|A22K_ARATH HVA22-like protein k (AtHVA22k) 59 4e-09
sp|Q8LE10|A22I_ARATH HVA22-like protein i (AtHVA22i) 59 5e-09
sp|Q8GXE9|A22J_ARATH HVA22-like protein j (AtHVA22j) 59 7e-09
sp|Q9UU91|YOP1_SCHPO Protein yop1 49 5e-06
sp|Q10010|YSV4_CAEEL Hypothetical protein T19C3.4 in chromo... 45 1e-04
sp|Q6BWH8|YOP1_DEBHA Protein YOP1 43 4e-04
>sp|Q5RE33|DP1_PONPY Polyposis locus protein 1 homolog
Length = 189
Score = 75.9 bits (185), Expect = 4e-14
Identities = 36/85 (42%), Positives = 54/85 (63%)
Frame = +3
Query: 6 FSLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRPYILKNQTKIDQV 185
FS+ E +DIFLSW P Y +LKC FL++ M P+ NG+ +Y IRP+ LK+++++D V
Sbjct: 96 FSIAEFFSDIFLSWFPFYYMLKCGFLLWCMAPSPSNGAELLYKRIIRPFFLKHESQVDSV 155
Query: 186 LSKTTNATKDIFNKVSETGEAYVKE 260
+ KD+ +K ET +A KE
Sbjct: 156 V-------KDLKDKAKETADAITKE 173
>sp|Q60870|DP1_MOUSE Polyposis locus protein 1 homolog (TB2 protein homolog) (GP106)
Length = 185
Score = 72.8 bits (177), Expect = 3e-13
Identities = 34/85 (40%), Positives = 54/85 (63%)
Frame = +3
Query: 6 FSLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRPYILKNQTKIDQV 185
FS+ E +D+FLSW+P Y +LKC FL++ M P+ NG+ +Y IRP L++++++D V
Sbjct: 92 FSIAEFFSDLFLSWLPFYYMLKCGFLLWCMAPSPANGAEMLYRRIIRPIFLRHESQVDSV 151
Query: 186 LSKTTNATKDIFNKVSETGEAYVKE 260
+ KD+ +K ET +A KE
Sbjct: 152 V-------KDVKDKAKETADAISKE 169
>sp|Q9LR09|A22G_ARATH Putative HVA22-like protein g (AtHVA22g)
Length = 166
Score = 64.3 bits (155), Expect = 1e-10
Identities = 30/72 (41%), Positives = 44/72 (61%)
Frame = +3
Query: 3 AFSLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRPYILKNQTKIDQ 182
A ++ E + D +SW+P+Y+ K F IYL P K G+ Y+Y SF RPYI K++ +ID+
Sbjct: 38 ALTIFERIGDALVSWLPMYSEAKLAFFIYLWFP-KTKGTTYVYDSFFRPYIAKHENEIDR 96
Query: 183 VLSKTTNATKDI 218
L K KD+
Sbjct: 97 NLVKVKTRAKDM 108
>sp|Q8LEM6|A22H_ARATH HVA22-like protein h (AtHVA22h)
Length = 315
Score = 60.8 bits (146), Expect = 1e-09
Identities = 30/90 (33%), Positives = 48/90 (53%)
Frame = +3
Query: 3 AFSLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRPYILKNQTKIDQ 182
A ++ E V D SW+PLY K F IYL P K G+ Y+Y SF +PY+ K++ +ID+
Sbjct: 49 ALTIFERVGDALASWVPLYCEAKLAFFIYLWFP-KTRGTTYVYDSFFQPYVAKHENEIDR 107
Query: 183 VLSKTTNATKDIFNKVSETGEAYVKERVID 272
L + D+ +Y + R+++
Sbjct: 108 SLIELRTKAGDLAVIYCRKAVSYGQTRIVE 137
>sp|Q6NLY8|A22K_ARATH HVA22-like protein k (AtHVA22k)
Length = 200
Score = 59.3 bits (142), Expect = 4e-09
Identities = 28/62 (45%), Positives = 44/62 (70%)
Frame = +3
Query: 3 AFSLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRPYILKNQTKIDQ 182
+FSL+E TD +SW PLY +K FL++L +PT GS IY + IRP++L++Q ++DQ
Sbjct: 77 SFSLVEVFTDKIISWFPLYYHVKFAFLVWLQLPTV-EGSKQIYNNQIRPFLLRHQARVDQ 135
Query: 183 VL 188
++
Sbjct: 136 LV 137
>sp|Q8LE10|A22I_ARATH HVA22-like protein i (AtHVA22i)
Length = 296
Score = 58.9 bits (141), Expect = 5e-09
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = +3
Query: 9 SLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRPYILKNQTKIDQVL 188
++ E V D F+SW+P+Y+ K F IYL P K G+ Y+Y SF RPY+ +++ ID L
Sbjct: 51 TVFERVGDAFVSWVPMYSEAKLAFFIYLWYP-KTRGTTYVYESFFRPYLSQHENDIDHSL 109
Query: 189 SKTTNATKDI----FNKVSETGEAYVKE 260
+ D+ + +V+ G+ + E
Sbjct: 110 LELRTRAGDMAVIYWQRVASYGQTRILE 137
>sp|Q8GXE9|A22J_ARATH HVA22-like protein j (AtHVA22j)
Length = 258
Score = 58.5 bits (140), Expect = 7e-09
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Frame = +3
Query: 9 SLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRPYILKNQTKIDQVL 188
S E V D F+SW+PLY +K VF +YL P K G+ ++Y + ++PY+ +++T+ID+ +
Sbjct: 51 SSFERVGDFFISWLPLYGEMKVVFFVYLWYP-KTKGTRHVYETLLKPYMAQHETEIDRKI 109
Query: 189 SKTTNATKDI----FNKVSETGEA 248
+ D FN ++ G++
Sbjct: 110 MELRARAWDFFIFYFNNFAQAGQS 133
>sp|Q9UU91|YOP1_SCHPO Protein yop1
Length = 182
Score = 48.9 bits (115), Expect = 5e-06
Identities = 25/66 (37%), Positives = 43/66 (65%)
Frame = +3
Query: 9 SLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRPYILKNQTKIDQVL 188
+++E + + L ++P+Y LLK +FLI+L +P K+NG+ IY IRPYI + +I + +
Sbjct: 98 NVIEYWSQLILYYVPVYWLLKAIFLIWLALP-KFNGATIIYRHLIRPYITPHVIRICKSV 156
Query: 189 SKTTNA 206
S+ A
Sbjct: 157 SRQNAA 162
>sp|Q10010|YSV4_CAEEL Hypothetical protein T19C3.4 in chromosome III
Length = 229
Score = 44.7 bits (104), Expect = 1e-04
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Frame = +3
Query: 6 FSLLESVTDIFLS-WIPLYALLKCVFLIYLMVPTKW-NGSIYIYYSFIRPYILKNQTKID 179
+S LE++ D+ L+ W P Y LK VF+ +L+ P W G+ +Y ++ P + +++ ID
Sbjct: 47 YSFLENLLDLVLAFWFPFYFQLKIVFIFWLLSP--WTKGASILYRKWVHPTLNRHEKDID 104
Query: 180 QVLSKTTNATKDIFNKVSETGEAYVKERVID 272
+L + + + ++ Y K+ V +
Sbjct: 105 ALLESAKSESYNQLMRIGSKSLVYAKDVVAE 135
>sp|Q6BWH8|YOP1_DEBHA Protein YOP1
Length = 177
Score = 42.7 bits (99), Expect = 4e-04
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = +3
Query: 6 FSLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRPYILKNQTKIDQV 185
F+++E + L WIP Y L K VFL+Y+ +P+ G++ +Y + I+P+ + +
Sbjct: 99 FNVVEFWSKAILYWIPFYYLFKTVFLVYIGIPST-GGAVTVYNAAIKPFSRRYIVNNKKF 157
Query: 186 LSKTTNATKDIFNKV 230
NA + + + V
Sbjct: 158 AQDINNAAQGVSSSV 172
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,147,137
Number of Sequences: 369166
Number of extensions: 1048690
Number of successful extensions: 2618
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2611
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)