Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_I05
(272 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08238|HS90B_HUMAN Heat shock protein HSP 90-beta (HSP 8... 59 3e-09
sp|Q9GKX8|HS90B_HORSE Heat shock protein HSP 90-beta (HSP 84) 59 3e-09
sp|P11499|HS90B_MOUSE Heat shock protein HSP 90-beta (HSP 8... 59 3e-09
sp|P07901|HS90A_MOUSE Heat shock protein HSP 90-alpha (HSP ... 59 5e-09
sp|P46633|HS90A_CRIGR Heat shock protein HSP 90-alpha (HSP 86) 59 5e-09
sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86) 58 8e-09
sp|Q90474|HS90A_BRARE Heat shock protein HSP 90-alpha 58 8e-09
sp|O02192|HSP83_DROAV Heat shock protein 83 (HSP 82) 58 8e-09
sp|P02828|HSP83_DROME Heat shock protein 83 (HSP 82) 57 1e-08
sp|Q04619|HS90B_CHICK Heat shock cognate protein HSP 90-beta 56 2e-08
>sp|P08238|HS90B_HUMAN Heat shock protein HSP 90-beta (HSP 84) (HSP 90)
Length = 724
Score = 59.3 bits (142), Expect = 3e-09
Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 3/57 (5%)
Frame = +2
Query: 2 LEDPQVHGNRIHRMIKLGLGIEDDDV---EMDATEAGDVPVVASTAEEDAGKMEEVD 163
LEDPQ H NRI+RMIKLGLGI++D+V E +A ++P + +EDA +MEEVD
Sbjct: 670 LEDPQTHSNRIYRMIKLGLGIDEDEVAAEEPNAAVPDEIPPL--EGDEDASRMEEVD 724
>sp|Q9GKX8|HS90B_HORSE Heat shock protein HSP 90-beta (HSP 84)
Length = 724
Score = 58.9 bits (141), Expect = 3e-09
Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 3/57 (5%)
Frame = +2
Query: 2 LEDPQVHGNRIHRMIKLGLGIEDDDV---EMDATEAGDVPVVASTAEEDAGKMEEVD 163
LEDPQ H NRI+RMIKLGLGI++D+V E A ++P + +EDA +MEEVD
Sbjct: 670 LEDPQTHSNRIYRMIKLGLGIDEDEVAAEEPSAAVPDEIPPL--EGDEDASRMEEVD 724
>sp|P11499|HS90B_MOUSE Heat shock protein HSP 90-beta (HSP 84) (Tumor-specific
transplantation 84 kDa antigen) (TSTA)
Length = 724
Score = 58.9 bits (141), Expect = 3e-09
Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 3/57 (5%)
Frame = +2
Query: 2 LEDPQVHGNRIHRMIKLGLGIEDDDV---EMDATEAGDVPVVASTAEEDAGKMEEVD 163
LEDPQ H NRI+RMIKLGLGI++D+V E A ++P + +EDA +MEEVD
Sbjct: 670 LEDPQTHSNRIYRMIKLGLGIDEDEVTAEEPSAAVPDEIPPL--EGDEDASRMEEVD 724
>sp|P07901|HS90A_MOUSE Heat shock protein HSP 90-alpha (HSP 86) (Tumor specific
transplantation 86 kDa antigen) (TSTA)
Length = 733
Score = 58.5 bits (140), Expect = 5e-09
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 3/57 (5%)
Frame = +2
Query: 2 LEDPQVHGNRIHRMIKLGLGIEDDDVEMDATEAG---DVPVVASTAEEDAGKMEEVD 163
LEDPQ H NRI+RMIKLGLGI++DD +D T A ++P + ++D +MEEVD
Sbjct: 679 LEDPQTHANRIYRMIKLGLGIDEDDPTVDDTSAAVTEEMPPL--EGDDDTSRMEEVD 733
>sp|P46633|HS90A_CRIGR Heat shock protein HSP 90-alpha (HSP 86)
Length = 733
Score = 58.5 bits (140), Expect = 5e-09
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 3/57 (5%)
Frame = +2
Query: 2 LEDPQVHGNRIHRMIKLGLGIEDDDVEMDATEAG---DVPVVASTAEEDAGKMEEVD 163
LEDPQ H NRI+RMIKLGLGI++DD +D T A ++P + ++D +MEEVD
Sbjct: 679 LEDPQTHANRIYRMIKLGLGIDEDDPTVDDTSAAVTEEMPPL--EGDDDTSRMEEVD 733
>sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86)
Length = 732
Score = 57.8 bits (138), Expect = 8e-09
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Frame = +2
Query: 2 LEDPQVHGNRIHRMIKLGLGIEDDDVEMDATEAG---DVPVVASTAEEDAGKMEEVD 163
LEDPQ H NRI+RMIKLGLGI++DD D T A ++P + ++D +MEEVD
Sbjct: 678 LEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPL--EGDDDTSRMEEVD 732
>sp|Q90474|HS90A_BRARE Heat shock protein HSP 90-alpha
Length = 726
Score = 57.8 bits (138), Expect = 8e-09
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Frame = +2
Query: 2 LEDPQVHGNRIHRMIKLGLGIEDDD---VEMDATEAGDVPVVASTAEEDAGKMEEVD 163
L+DPQ H NRI+RMIKLGLGI+DDD E+ D+PV+ ++D +MEEVD
Sbjct: 672 LDDPQTHANRIYRMIKLGLGIDDDDSVVEEISQPAEEDMPVL--EGDDDTSRMEEVD 726
>sp|O02192|HSP83_DROAV Heat shock protein 83 (HSP 82)
Length = 716
Score = 57.8 bits (138), Expect = 8e-09
Identities = 31/56 (55%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Frame = +2
Query: 2 LEDPQVHGNRIHRMIKLGLGIEDDD--VEMDATEAGDVPVVASTAEEDAGKMEEVD 163
L+ PQVH +RI+RMIKLGLGI++D+ DA AGD P + EDA MEEVD
Sbjct: 662 LDSPQVHASRIYRMIKLGLGIDEDEPMTTEDAQSAGDAPSLVEDT-EDASHMEEVD 716
>sp|P02828|HSP83_DROME Heat shock protein 83 (HSP 82)
Length = 717
Score = 57.4 bits (137), Expect = 1e-08
Identities = 31/56 (55%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Frame = +2
Query: 2 LEDPQVHGNRIHRMIKLGLGIEDDD--VEMDATEAGDVPVVASTAEEDAGKMEEVD 163
L+ PQVH +RI+RMIKLGLGI++D+ DA AGD P + EDA MEEVD
Sbjct: 663 LDSPQVHASRIYRMIKLGLGIDEDEPMTTDDAQSAGDAPSLVEDT-EDASHMEEVD 717
>sp|Q04619|HS90B_CHICK Heat shock cognate protein HSP 90-beta
Length = 725
Score = 56.2 bits (134), Expect = 2e-08
Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Frame = +2
Query: 2 LEDPQVHGNRIHRMIKLGLGIEDDDV---EMDATEAGDVPVVASTAEEDAGKMEEVD 163
LEDPQ H NRI+RMIKLGLGI++D+V E ++P + +ED +MEEVD
Sbjct: 671 LEDPQTHSNRIYRMIKLGLGIDEDEVIAEESSIAPPDEIPPL--EGDEDTSRMEEVD 725
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,590,052
Number of Sequences: 369166
Number of extensions: 365121
Number of successful extensions: 1243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 68,354,980
effective HSP length: 60
effective length of database: 57,270,880
effective search space used: 1718126400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)