Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_H23
(619 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49902|5NTC_HUMAN Cytosolic purine 5'-nucleotidase (5'-n... 166 6e-41
sp|P13828|MSP1_PLAYO Merozoite surface protein 1 precursor ... 35 0.20
sp|Q96NH3|CF170_HUMAN Protein C6orf170 31 2.2
sp|P57335|FLHA_BUCAI Flagellar biosynthesis protein flhA 30 3.8
sp|Q93109|EQT5_ACTEQ Equinatoxin-5 precursor (Equinatoxin V... 30 3.8
sp|P25298|RNA14_YEAST mRNA 3'-end processing protein RNA14 30 5.0
sp|P36094|SPC42_YEAST Spindle pole body component SPC42 29 8.5
sp|Q13438|OS9_HUMAN Protein OS-9 precursor 29 8.5
sp|Q4QJM6|GLND_HAEI8 [Protein-PII] uridylyltransferase (PII... 29 8.5
sp|P46419|GSTM1_DERPT Glutathione S-transferase (GST class-... 29 8.5
>sp|P49902|5NTC_HUMAN Cytosolic purine 5'-nucleotidase (5'-nucleotidase cytosolic II)
Length = 561
Score = 166 bits (419), Expect = 6e-41
Identities = 83/192 (43%), Positives = 124/192 (64%), Gaps = 1/192 (0%)
Frame = +3
Query: 24 RMIEIGYPKEIKNFTYDPTFPIRGLWIDKKFGNLLKMDNYGNVLMAFHGLTKMSNSEILA 203
R++ IGYP+E+ +F YD TFP RGL D +GNLLK+D YGN+L+ HG + E
Sbjct: 76 RLVSIGYPQELLSFAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETRE 135
Query: 204 KYPNKFV-KFEQPRIMVTNTLYNLPETYLIAAAIDYFESTSDCVKDDSGFCLKNNVTIMY 380
+YPNKF+ + + R + NTL+NLPETYL+A +D+F + ++GF ++ + Y
Sbjct: 136 QYPNKFIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSCETGF-KDGDLFMSY 194
Query: 381 STIIEDIRDSMDSVHGGKEMSETILQNLEKYVERTPKLAEMLTHLKSNGAKVFLLTNSDY 560
++ +D+RD++D VH + E ++NLEKYV + KL +L+ +K G KVFL TNSDY
Sbjct: 195 RSMFQDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVG-KVFLATNSDY 253
Query: 561 NYTEKICQYILN 596
YT+KI Y+ +
Sbjct: 254 KYTDKIMTYLFD 265
>sp|P13828|MSP1_PLAYO Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (230 kDa) (PY230)
Length = 1772
Score = 34.7 bits (78), Expect = 0.20
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Frame = +3
Query: 375 MYSTII-------EDIRDSMDSVHGGKEMSETILQNLEKYVERTPKLAEMLTHLKSN 524
+Y T+I E++++ +D+ K E + +NLEKY++ KL E + H ++N
Sbjct: 1561 LYETVIGQAEEYSEELQNRLDNYKNEKAEFEILTKNLEKYIQIDEKLDEFVEHAENN 1617
>sp|Q96NH3|CF170_HUMAN Protein C6orf170
Length = 1247
Score = 31.2 bits (69), Expect = 2.2
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -3
Query: 386 C*IHYCHIILQAETTIVFDTITSRFKIINCCSNQICFW*II*CISNHNTWL 234
C HY ++L+AE +VF S F + +QIC I C N+ W+
Sbjct: 1116 CSTHYIEMLLKAELPLVF----SAFHMSGFAPSQICLQWITQCFWNYLDWI 1162
>sp|P57335|FLHA_BUCAI Flagellar biosynthesis protein flhA
Length = 696
Score = 30.4 bits (67), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 69 YDPTFPIRGLWIDKKFGNLLKMDNY 143
Y+PTF + G WID++F N + Y
Sbjct: 458 YEPTFGLSGYWIDEEFKNKAQKKGY 482
>sp|Q93109|EQT5_ACTEQ Equinatoxin-5 precursor (Equinatoxin V) (EqtV) (EqT-V)
Length = 214
Score = 30.4 bits (67), Expect = 3.8
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = -1
Query: 400 MSSMIVEYIIVTLFFKQKPLS---SLTQSLVDSK*SIAAAIRYVSGK--LYNVLVTIIRG 236
MS +I+ +I+VT+ LS S+ + D K S+A A + G +NVL T+++
Sbjct: 1 MSRLIIVFIVVTMICAATALSSKKSINEDEKDEKRSVAVAGAVIEGATLTFNVLQTVLKA 60
Query: 235 CSNLT 221
+++
Sbjct: 61 LGDIS 65
>sp|P25298|RNA14_YEAST mRNA 3'-end processing protein RNA14
Length = 677
Score = 30.0 bits (66), Expect = 5.0
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Frame = +3
Query: 135 DNYGNVLMAFHGLTKMSNSEILAKYPNKFVKFEQPRIMVTNTLYNLPETYLIAAAI--DY 308
DN N+L F + + E AK + +F T Y+ T + + D
Sbjct: 37 DNPTNILSYFQLIQYLETQESYAKVREVYEQFHN-----TFPFYSPAWTLQLKGELARDE 91
Query: 309 FESTSDCVKDDSGFCLKNNVTIMYSTIIEDIRDSMDSVHGGKEMSETILQNLEKYVER 482
FE+ + L+NN ++ST ++ IR + + GG+E I++ + +++
Sbjct: 92 FETVEKILAQCLSGKLENNDLSLWSTYLDYIRRKNNLITGGQEARAVIVKAFQLVMQK 149
>sp|P36094|SPC42_YEAST Spindle pole body component SPC42
Length = 363
Score = 29.3 bits (64), Expect = 8.5
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 399 IRDSMDSVHGGKEMSETILQNLEKYVERTPKLAEMLTHLK 518
+R+ + + K+++ET+ LEKYV+ T KL + +L+
Sbjct: 76 LREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQ 115
>sp|Q13438|OS9_HUMAN Protein OS-9 precursor
Length = 667
Score = 29.3 bits (64), Expect = 8.5
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 398 HSRLYGFGSRRKRNVRNYFAEFREIC*ENTEISGN 502
HS+ YG GS+ N R AE R +C E ISG+
Sbjct: 171 HSQTYGNGSKCDLNGRpreAEVRFLCDEGAGISGD 205
>sp|Q4QJM6|GLND_HAEI8 [Protein-PII] uridylyltransferase (PII uridylyl-transferase)
(Uridylyl-removing enzyme) (UTase)
Length = 863
Score = 29.3 bits (64), Expect = 8.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 437 FFSSVNRIHRVSNVFNDC*IHYCHIILQAETTIVFDTITSRFKIINCC 294
FF +++RI +SN+ HY +L + V D + F++IN C
Sbjct: 295 FFQALHRISLISNLLIQ---HYRENVLPSNQDTVIDQLDDDFQLINQC 339
>sp|P46419|GSTM1_DERPT Glutathione S-transferase (GST class-mu) (Major allergen Der p 8)
(P dp 15)
Length = 219
Score = 29.3 bits (64), Expect = 8.5
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Frame = +3
Query: 303 DYFESTSDCVK------DDSGFCLKNNVTIMYSTIIE---DIRDSMDSVHGGKEMSETIL 455
DY +S DC+K + F N++ + + E ++ + V G E
Sbjct: 127 DYLKSLPDCLKLMSKFVGEHAFIAGANISYVDFNLYEYLCHVKVMVPEVFGQFE------ 180
Query: 456 QNLEKYVERTPKLAEMLTHLKSNGAKVFLLTNSDYN 563
NL++YVER L + ++K K F S +N
Sbjct: 181 -NLKRYVERMESLPRVSDYIKKQQPKTFNAPTSKWN 215
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,068,602
Number of Sequences: 369166
Number of extensions: 1287403
Number of successful extensions: 3683
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3679
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4895780500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)