Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_H18
(396 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O35587|TMEDA_MESAU Transmembrane protein Tmp21 precursor... 135 3e-32
sp|Q9D1D4|TMEDA_MOUSE Transmembrane emp24 domain containing... 135 4e-32
sp|P49755|TMEDA_HUMAN Transmembrane emp24 domain containing... 135 4e-32
sp|Q63584|TMEDA_RAT Transmembrane emp24 domain containing p... 135 4e-32
sp|Q28735|TMEDA_RABIT Transmembrane emp24 domain containing... 135 4e-32
sp|Q90515|TMEDA_FUGRU Transmembrane emp24 domain containing... 135 4e-32
sp|Q5E971|TMEDA_BOVIN Transmembrane emp24 domain containing... 135 4e-32
sp|Q5RE32|TMEDA_PONPY Transmembrane emp24 domain containing... 134 7e-32
sp|P54837|ERV25_YEAST Protein ERV25 precursor 96 3e-20
sp|Q9BVK6|TMED9_HUMAN Transmembrane emp24 domain containing... 69 3e-12
>sp|O35587|TMEDA_MESAU Transmembrane protein Tmp21 precursor (21 kDa transmembrane
trafficking protein) (Integral membrane protein p23)
Length = 219
Score = 135 bits (340), Expect = 3e-32
Identities = 63/86 (73%), Positives = 75/86 (87%)
Frame = +2
Query: 2 NYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDREEKMRDTNESTHNRVFYFSLFS 181
NY+ +A+ EKLKPLEVEL+RLEDLS+ IV DF YM+ REE+MRDTNEST+ RV YFS+FS
Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193
Query: 182 MACLMGLAIWQVLYLRRYFKSKKLIE 259
M CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 194 MLCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q9D1D4|TMEDA_MOUSE Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein)
Length = 219
Score = 135 bits (339), Expect = 4e-32
Identities = 63/86 (73%), Positives = 75/86 (87%)
Frame = +2
Query: 2 NYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDREEKMRDTNESTHNRVFYFSLFS 181
NY+ +A+ EKLKPLEVEL+RLEDLS+ IV DF YM+ REE+MRDTNEST+ RV YFS+FS
Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193
Query: 182 MACLMGLAIWQVLYLRRYFKSKKLIE 259
M CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 194 MFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|P49755|TMEDA_HUMAN Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein) (p24delta) (S31III125) (S31I125)
(Tmp-21-I)
Length = 219
Score = 135 bits (339), Expect = 4e-32
Identities = 63/86 (73%), Positives = 75/86 (87%)
Frame = +2
Query: 2 NYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDREEKMRDTNESTHNRVFYFSLFS 181
NY+ +A+ EKLKPLEVEL+RLEDLS+ IV DF YM+ REE+MRDTNEST+ RV YFS+FS
Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193
Query: 182 MACLMGLAIWQVLYLRRYFKSKKLIE 259
M CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 194 MFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q63584|TMEDA_RAT Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein)
Length = 219
Score = 135 bits (339), Expect = 4e-32
Identities = 63/86 (73%), Positives = 75/86 (87%)
Frame = +2
Query: 2 NYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDREEKMRDTNESTHNRVFYFSLFS 181
NY+ +A+ EKLKPLEVEL+RLEDLS+ IV DF YM+ REE+MRDTNEST+ RV YFS+FS
Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193
Query: 182 MACLMGLAIWQVLYLRRYFKSKKLIE 259
M CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 194 MFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q28735|TMEDA_RABIT Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein) (Integral membrane protein p23)
Length = 219
Score = 135 bits (339), Expect = 4e-32
Identities = 63/86 (73%), Positives = 75/86 (87%)
Frame = +2
Query: 2 NYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDREEKMRDTNESTHNRVFYFSLFS 181
NY+ +A+ EKLKPLEVEL+RLEDLS+ IV DF YM+ REE+MRDTNEST+ RV YFS+FS
Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193
Query: 182 MACLMGLAIWQVLYLRRYFKSKKLIE 259
M CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 194 MFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q90515|TMEDA_FUGRU Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (S31III125)
Length = 213
Score = 135 bits (339), Expect = 4e-32
Identities = 63/86 (73%), Positives = 75/86 (87%)
Frame = +2
Query: 2 NYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDREEKMRDTNESTHNRVFYFSLFS 181
NY+ +A+ EKLKPLEVEL+RLEDLS+ IV DF YM+ REE+MRDTNEST+ RV YFS+FS
Sbjct: 128 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 187
Query: 182 MACLMGLAIWQVLYLRRYFKSKKLIE 259
M CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 188 MFCLIGLATWQVFYLRRFFKAKKLIE 213
>sp|Q5E971|TMEDA_BOVIN Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein)
Length = 219
Score = 135 bits (339), Expect = 4e-32
Identities = 63/86 (73%), Positives = 75/86 (87%)
Frame = +2
Query: 2 NYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDREEKMRDTNESTHNRVFYFSLFS 181
NY+ +A+ EKLKPLEVEL+RLEDLS+ IV DF YM+ REE+MRDTNEST+ RV YFS+FS
Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193
Query: 182 MACLMGLAIWQVLYLRRYFKSKKLIE 259
M CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 194 MFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|Q5RE32|TMEDA_PONPY Transmembrane emp24 domain containing protein 10 precursor
(Transmembrane protein Tmp21) (21 kDa transmembrane
trafficking protein)
Length = 219
Score = 134 bits (337), Expect = 7e-32
Identities = 63/86 (73%), Positives = 74/86 (86%)
Frame = +2
Query: 2 NYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDREEKMRDTNESTHNRVFYFSLFS 181
NY+ +A+ EKLKPLEVEL+RLEDLS+ IV DF YM REE+MRDTNEST+ RV YFS+FS
Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMEKREEEMRDTNESTNTRVLYFSIFS 193
Query: 182 MACLMGLAIWQVLYLRRYFKSKKLIE 259
M CL+GLA WQV YLRR+FK+KKLIE
Sbjct: 194 MFCLIGLATWQVFYLRRFFKAKKLIE 219
>sp|P54837|ERV25_YEAST Protein ERV25 precursor
Length = 211
Score = 95.9 bits (237), Expect = 3e-20
Identities = 42/85 (49%), Positives = 66/85 (77%)
Frame = +2
Query: 2 NYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDREEKMRDTNESTHNRVFYFSLFS 181
+++ ++ EKLKP+EVEL+R+E+++DEIV + Y+++REE++RDTNEST+ RV FS+
Sbjct: 127 DWNKISANEKLKPIEVELRRVEEITDEIVDELTYLKNREERLRDTNESTNRRVRNFSILV 186
Query: 182 MACLMGLAIWQVLYLRRYFKSKKLI 256
+ L L +WQV YL+ YFK+K +I
Sbjct: 187 IIVLSSLGVWQVNYLKNYFKTKHII 211
>sp|Q9BVK6|TMED9_HUMAN Transmembrane emp24 domain containing protein 9 precursor
(Glycoprotein 25L2)
Length = 214
Score = 68.9 bits (167), Expect = 3e-12
Identities = 29/85 (34%), Positives = 57/85 (67%)
Frame = +2
Query: 2 NYDSLAQAEKLKPLEVELKRLEDLSDEIVKDFQYMRDREEKMRDTNESTHNRVFYFSLFS 181
+Y +A +KL L++ +++L + ++I K+ Y R REE+ R T+EST+ RV ++S+
Sbjct: 130 DYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWSILQ 189
Query: 182 MACLMGLAIWQVLYLRRYFKSKKLI 256
L+ + +WQ+ +L+ +F++KKL+
Sbjct: 190 TLILVAIGVWQMRHLKSFFEAKKLV 214
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,370,278
Number of Sequences: 369166
Number of extensions: 590653
Number of successful extensions: 2174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2173
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)