Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_H03
(933 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P28021|CSK2B_XENLA Casein kinase II beta subunit (CK II ... 336 5e-92
sp|P67870|CSK2B_HUMAN Casein kinase II beta subunit (CK II ... 336 5e-92
sp|Q91398|CSK2B_BRARE Casein kinase II beta subunit (CK II ... 334 2e-91
sp|O76485|CSK2B_SPOFR Casein kinase II beta subunit (CK II ... 332 9e-91
sp|P08182|CSK2B_DROME Casein kinase II beta subunit (CK II ... 327 2e-89
sp|P28548|CSK2B_CAEEL Casein kinase II beta subunit (CK II ... 286 6e-77
sp|O96863|CSK2C_DROME Casein kinase II beta' subunit (CK II... 221 2e-57
sp|P40232|CSK2B_SCHPO Casein kinase II beta subunit (CK II ... 218 1e-56
sp|O80507|CSK2E_ARATH Putative casein kinase II beta-4 subu... 209 9e-54
sp|O81275|CSK2D_ARATH Casein kinase II beta-3 subunit (CK I... 207 3e-53
>sp|P28021|CSK2B_XENLA Casein kinase II beta subunit (CK II beta) (Phosvitin)
Length = 215
Score = 336 bits (862), Expect = 5e-92
Identities = 155/191 (81%), Positives = 168/191 (87%)
Frame = +3
Query: 3 EFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXXXXXXXXXQSDIIEQAAEML 182
EFFCEVDEDYIQD+FNLTGLNEQVPHYRQALDMI QSD+IEQAAEML
Sbjct: 20 EFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEML 79
Query: 183 YGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSLPIGLSDVPGEAMVKLYCPK 362
YGLIHARYILT RGIAQM+EK+QQ +FGYCPRVYCE QP LPIGLSD+PGEAMVKLYCPK
Sbjct: 80 YGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPK 139
Query: 363 CQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPINQFVPKLYGFKIHPLAYQI 542
C DVYTPKS+RHHHTDGAYFGTGFPHMLF++HPEYRPKRP NQFVP+LYGFKIHP+AYQ+
Sbjct: 140 CMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQL 199
Query: 543 QYQAAANCKMP 575
Q QAA+N K P
Sbjct: 200 QLQAASNFKSP 210
>sp|P67870|CSK2B_HUMAN Casein kinase II beta subunit (CK II beta) (Phosvitin) (G5a)
sp|P67874|CSK2B_RAT Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67873|CSK2B_RABIT Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67872|CSK2B_PIG Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67871|CSK2B_MOUSE Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67869|CSK2B_CHICK Casein kinase II beta subunit (CK II beta) (Phosvitin)
sp|P67868|CSK2B_BOVIN Casein kinase II beta subunit (CK II beta) (Phosvitin)
Length = 215
Score = 336 bits (862), Expect = 5e-92
Identities = 155/191 (81%), Positives = 168/191 (87%)
Frame = +3
Query: 3 EFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXXXXXXXXXQSDIIEQAAEML 182
EFFCEVDEDYIQD+FNLTGLNEQVPHYRQALDMI QSD+IEQAAEML
Sbjct: 20 EFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEML 79
Query: 183 YGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSLPIGLSDVPGEAMVKLYCPK 362
YGLIHARYILT RGIAQM+EK+QQ +FGYCPRVYCE QP LPIGLSD+PGEAMVKLYCPK
Sbjct: 80 YGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPK 139
Query: 363 CQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPINQFVPKLYGFKIHPLAYQI 542
C DVYTPKS+RHHHTDGAYFGTGFPHMLF++HPEYRPKRP NQFVP+LYGFKIHP+AYQ+
Sbjct: 140 CMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQL 199
Query: 543 QYQAAANCKMP 575
Q QAA+N K P
Sbjct: 200 QLQAASNFKSP 210
>sp|Q91398|CSK2B_BRARE Casein kinase II beta subunit (CK II beta)
Length = 215
Score = 334 bits (857), Expect = 2e-91
Identities = 154/191 (80%), Positives = 168/191 (87%)
Frame = +3
Query: 3 EFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXXXXXXXXXQSDIIEQAAEML 182
EFFCEVDEDYIQD+FNLTGLNEQVPHYRQALDMI QSD+IEQAAEML
Sbjct: 20 EFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEML 79
Query: 183 YGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSLPIGLSDVPGEAMVKLYCPK 362
YGLIHARYILT RGIAQM+EK+QQ +FGYCPRVYCE QP LPIGLSD+PGEAMVKLYCPK
Sbjct: 80 YGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPK 139
Query: 363 CQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPINQFVPKLYGFKIHPLAYQI 542
C DVYTPKS+RHHHTDGAYFGTGFPHMLF++HPEYRPKRP NQFVP+LYGFKIHP+AYQ+
Sbjct: 140 CMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQL 199
Query: 543 QYQAAANCKMP 575
Q QAA++ K P
Sbjct: 200 QLQAASSFKSP 210
>sp|O76485|CSK2B_SPOFR Casein kinase II beta subunit (CK II beta)
Length = 221
Score = 332 bits (851), Expect = 9e-91
Identities = 154/202 (76%), Positives = 173/202 (85%), Gaps = 1/202 (0%)
Frame = +3
Query: 3 EFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXXXXXXXXXQSDIIEQAAEML 182
EFFCEVDEDYI D+FNLTGLNEQVPHYRQALDMI QSD++EQA+E+L
Sbjct: 20 EFFCEVDEDYINDKFNLTGLNEQVPHYRQALDMILDLEPDDDLDDNPNQSDLVEQASEIL 79
Query: 183 YGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSLPIGLSDVPGEAMVKLYCPK 362
YGLIHARYILT RGI QM+EK+Q +FG+CPRVYCE QP LP+GLSDVPGEAMVKLYCP+
Sbjct: 80 YGLIHARYILTNRGIGQMLEKFQAGDFGHCPRVYCECQPMLPLGLSDVPGEAMVKLYCPR 139
Query: 363 CQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPINQFVPKLYGFKIHPLAYQI 542
C DVYTPKS+RHHHTDGAYFGTGFPHM+F++HPEYRPKRP +QFVP+LYGFKIHPLAYQI
Sbjct: 140 CMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPEYRPKRPASQFVPRLYGFKIHPLAYQI 199
Query: 543 QYQAAANCKMPPRN-AYGNGKR 605
Q QAAAN K P R+ +Y NGKR
Sbjct: 200 QQQAAANFKAPLRSLSYNNGKR 221
>sp|P08182|CSK2B_DROME Casein kinase II beta subunit (CK II beta)
Length = 235
Score = 327 bits (839), Expect = 2e-89
Identities = 155/197 (78%), Positives = 167/197 (84%)
Frame = +3
Query: 3 EFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXXXXXXXXXQSDIIEQAAEML 182
EFFCEVDEDYIQD+FNLTGLNEQVP+YRQALDMI QSD+ EQAAEML
Sbjct: 20 EFFCEVDEDYIQDKFNLTGLNEQVPNYRQALDMILDLEPEDELEDNPLQSDMTEQAAEML 79
Query: 183 YGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSLPIGLSDVPGEAMVKLYCPK 362
YGLIHARYILT RGIAQMIEK+Q +FG+CPRVYCE QP LP+GLSD+PGEAMVK YCPK
Sbjct: 80 YGLIHARYILTNRGIAQMIEKYQTGDFGHCPRVYCESQPMLPLGLSDIPGEAMVKTYCPK 139
Query: 363 CQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPINQFVPKLYGFKIHPLAYQI 542
C DVYTPKS+RHHHTDGAYFGTGFPHMLF++HPEYRPKRP NQFVP+LYGFKIH LAYQI
Sbjct: 140 CIDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPTNQFVPRLYGFKIHSLAYQI 199
Query: 543 QYQAAANCKMPPRNAYG 593
Q QAAAN KMP R G
Sbjct: 200 QLQAAANFKMPLRAQRG 216
>sp|P28548|CSK2B_CAEEL Casein kinase II beta subunit (CK II beta)
Length = 234
Score = 286 bits (732), Expect = 6e-77
Identities = 131/178 (73%), Positives = 149/178 (83%)
Frame = +3
Query: 3 EFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXXXXXXXXXQSDIIEQAAEML 182
EFFCEVDE+YIQDRFNLTGLNEQVP YRQALDMI +D++EQAAEML
Sbjct: 20 EFFCEVDEEYIQDRFNLTGLNEQVPKYRQALDMILDLEPDDIEDNAT-NTDLVEQAAEML 78
Query: 183 YGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSLPIGLSDVPGEAMVKLYCPK 362
YGLIHARYILT RGI+QM+EKW+ +FG CPRVYCE QP LPIGLSDVPGEAMVKLYCP+
Sbjct: 79 YGLIHARYILTNRGISQMVEKWRDHDFGVCPRVYCENQPMLPIGLSDVPGEAMVKLYCPR 138
Query: 363 CQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPINQFVPKLYGFKIHPLAY 536
C V+ P+S+RH HTDG+YFGTGFPHMLF +HP+ RP+RP+ QFVPKLYGFKIHP+AY
Sbjct: 139 CNMVFVPRSSRHQHTDGSYFGTGFPHMLFFVHPDLRPRRPVTQFVPKLYGFKIHPVAY 196
>sp|O96863|CSK2C_DROME Casein kinase II beta' subunit (CK II beta')
Length = 219
Score = 221 bits (563), Expect = 2e-57
Identities = 105/192 (54%), Positives = 133/192 (69%)
Frame = +3
Query: 3 EFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXXXXXXXXXQSDIIEQAAEML 182
EFFCEVDE+YIQD+FNL L+ V +Y+ AL++I +E +AE L
Sbjct: 20 EFFCEVDEEYIQDKFNLNFLDSNVKNYKCALEVILDLNPGSASEDPAEPE--LEASAEKL 77
Query: 183 YGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSLPIGLSDVPGEAMVKLYCPK 362
YGLIHAR+ILT RGI M++K+ + EFG CPR +C QP LPIGLSD PGE MV++YCPK
Sbjct: 78 YGLIHARFILTNRGIELMLDKYNKGEFGTCPRAFCHSQPVLPIGLSDNPGEDMVRIYCPK 137
Query: 363 CQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPINQFVPKLYGFKIHPLAYQI 542
C DVY PK++RH + DGA+FGTGFPHM F+ P+ RPKR +FVP+LYGFKIHP AY+
Sbjct: 138 CNDVYIPKASRHSNLDGAFFGTGFPHMFFMEKPDARPKRAKQKFVPRLYGFKIHPTAYRT 197
Query: 543 QYQAAANCKMPP 578
+ + M P
Sbjct: 198 AAEIQKDVTMTP 209
>sp|P40232|CSK2B_SCHPO Casein kinase II beta subunit (CK II beta)
Length = 231
Score = 218 bits (556), Expect = 1e-56
Identities = 98/174 (56%), Positives = 128/174 (73%)
Frame = +3
Query: 3 EFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXXXXXXXXXQSDIIEQAAEML 182
EFFCEVDED+IQDRFNLTGL+ +VPHY Q+LD+I D +E +A L
Sbjct: 27 EFFCEVDEDFIQDRFNLTGLSHEVPHYSQSLDLILDVLDPDLPEEV---QDEVEASARHL 83
Query: 183 YGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSLPIGLSDVPGEAMVKLYCPK 362
YGLIHARYILT +G+ +M+EK+++C+FG+CPRV C QP LP+GLSD+ VKLYCP+
Sbjct: 84 YGLIHARYILTAQGLYKMLEKYKKCDFGHCPRVLCNGQPMLPVGLSDIAHTKSVKLYCPR 143
Query: 363 CQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPINQFVPKLYGFKIH 524
C+DVYTPKS RH DGAYFGT FPHMLF ++PE + +++P+++GFK+H
Sbjct: 144 CEDVYTPKSQRHASIDGAYFGTSFPHMLFQVYPELAVPKSQERYIPRIFGFKVH 197
>sp|O80507|CSK2E_ARATH Putative casein kinase II beta-4 subunit (CK II beta-4)
Length = 283
Score = 209 bits (532), Expect = 9e-54
Identities = 93/174 (53%), Positives = 124/174 (71%)
Frame = +3
Query: 3 EFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXXXXXXXXXQSDIIEQAAEML 182
EFFCEVDEDYIQD FNL GL+ QVP+Y ALD+I Q +++E AAEML
Sbjct: 107 EFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNGDMFTEEQHEMVESAAEML 166
Query: 183 YGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSLPIGLSDVPGEAMVKLYCPK 362
YGLIH RYILTT+G+A M+EK++ +FG CPRV+C Q LP+G SD+P + VK+YCPK
Sbjct: 167 YGLIHVRYILTTKGMAAMMEKYKNYDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPK 226
Query: 363 CQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPINQFVPKLYGFKIH 524
C+D+Y P+S + DGAYFGT FPH+ + + +P++P +VPK++GFK+H
Sbjct: 227 CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMAYGNMKPQKPAQNYVPKIFGFKVH 280
>sp|O81275|CSK2D_ARATH Casein kinase II beta-3 subunit (CK II beta-3)
Length = 276
Score = 207 bits (528), Expect = 3e-53
Identities = 92/174 (52%), Positives = 123/174 (70%)
Frame = +3
Query: 3 EFFCEVDEDYIQDRFNLTGLNEQVPHYRQALDMIXXXXXXXXXXXXXXQSDIIEQAAEML 182
+FFCEVDEDYIQD FNL GL+ QVP+Y ALD+I Q +++E AAEML
Sbjct: 101 DFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVDASNSEMFTDEQHEMVESAAEML 160
Query: 183 YGLIHARYILTTRGIAQMIEKWQQCEFGYCPRVYCEIQPSLPIGLSDVPGEAMVKLYCPK 362
YGLIH RYILTT+G+A M EK++ C+FG CPRV+C Q LP+G SD+P + VK+YCPK
Sbjct: 161 YGLIHVRYILTTKGMAAMTEKYKNCDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPK 220
Query: 363 CQDVYTPKSTRHHHTDGAYFGTGFPHMLFLMHPEYRPKRPINQFVPKLYGFKIH 524
C+D+ P+S + DGAYFGT FPH+ + + +P++P +VPK++GFK+H
Sbjct: 221 CEDISYPRSKFQGNIDGAYFGTTFPHLFLMTYGNLKPQKPTQSYVPKIFGFKVH 274
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,385,093
Number of Sequences: 369166
Number of extensions: 1870911
Number of successful extensions: 3827
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3796
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9606826000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)