Planarian EST Database


Dr_sW_021_G14

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_021_G14
         (377 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P48158|RL23_CAEEL  60S ribosomal protein L23                   187   5e-48
sp|P62830|RL23_MOUSE  60S ribosomal protein L23 >gi|51338617...   178   3e-45
sp|Q6PC14|RL23_BRARE  60S ribosomal protein L23                   177   7e-45
sp|Q5REU2|RL23_PONPY  60S ribosomal protein L23                   177   9e-45
sp|O42867|RL23_SCHPO  60S ribosomal protein L23                   174   4e-44
sp|Q93140|RL23_BRUMA  60S ribosomal protein L23                   174   4e-44
sp|Q9GNE2|RL23_AEDAE  60S ribosomal protein L23 (L17A)            174   4e-44
sp|P48159|RL23_DROME  60S ribosomal protein L23 (L17A)            174   6e-44
sp|Q9XSU3|RL23_CANFA  60S ribosomal protein L23                   173   1e-43
sp|Q07760|RL23_TOBAC  60S ribosomal protein L23                   168   3e-42
>sp|P48158|RL23_CAEEL 60S ribosomal protein L23
          Length = 140

 Score =  187 bits (476), Expect = 5e-48
 Identities = 87/107 (81%), Positives = 100/107 (93%)
 Frame = +2

Query: 2   VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 181
           V+NCADN+GAKN+++ISV+G + RLNRLP+A VGDM VCSVKKGKPELRKKVLQGVVIRQ
Sbjct: 25  VMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQ 84

Query: 182 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 322
           RK ++RKDGT I FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 85  RKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|P62830|RL23_MOUSE 60S ribosomal protein L23
 sp|P62832|RL23_RAT 60S ribosomal protein L23
 sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23
 sp|P62829|RL23_HUMAN 60S ribosomal protein L23 (Ribosomal protein L17)
 sp|P62831|RL23_PIG 60S ribosomal protein L23 (Ribosomal protein L17)
          Length = 140

 Score =  178 bits (452), Expect = 3e-45
 Identities = 86/107 (80%), Positives = 95/107 (88%)
 Frame = +2

Query: 2   VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 181
           VINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKPELRKKV   VVIRQ
Sbjct: 25  VINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQ 84

Query: 182 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 322
           RK Y+RKDG  + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 85  RKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23
          Length = 140

 Score =  177 bits (449), Expect = 7e-45
 Identities = 85/107 (79%), Positives = 95/107 (88%)
 Frame = +2

Query: 2   VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 181
           VINCADN+GAKN+YIISV G K RLNRLP+A VGDMV+ +VKKGKPELRKKV   VVIRQ
Sbjct: 25  VINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQ 84

Query: 182 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 322
           RK Y+RKDG  + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 85  RKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23
          Length = 140

 Score =  177 bits (448), Expect = 9e-45
 Identities = 85/107 (79%), Positives = 95/107 (88%)
 Frame = +2

Query: 2   VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 181
           VINCADN+GAKN+YIISV G K +LNRLPAA VGDMV+ +VKKGKPELRKKV   VVIRQ
Sbjct: 25  VINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQ 84

Query: 182 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 322
           RK Y+RKDG  + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 85  RKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|O42867|RL23_SCHPO 60S ribosomal protein L23
          Length = 139

 Score =  174 bits (442), Expect = 4e-44
 Identities = 78/107 (72%), Positives = 97/107 (90%)
 Frame = +2

Query: 2   VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 181
           ++NCADNSGAKN+YI+SVFGT +RLNRLPAA+ GDMV+ +VKKGKP+LRKK++  +V+RQ
Sbjct: 24  IMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQ 83

Query: 182 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 322
           RK ++RKDG  + FEDNAGV+VN KGEMKGSAITGPVAKECAD+WP+
Sbjct: 84  RKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
>sp|Q93140|RL23_BRUMA 60S ribosomal protein L23
          Length = 140

 Score =  174 bits (442), Expect = 4e-44
 Identities = 82/107 (76%), Positives = 95/107 (88%)
 Frame = +2

Query: 2   VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 181
           V+NCADN+GAKN+++I+V G K RLNRLP+A VGDM V SVKKGKPELRKKVLQ VV+RQ
Sbjct: 25  VMNCADNTGAKNLFVIAVSGIKGRLNRLPSAGVGDMFVASVKKGKPELRKKVLQAVVVRQ 84

Query: 182 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 322
           RK Y+R DG+ I FEDNAGV+VNNKGEMKGSAITGPV KECAD+WP+
Sbjct: 85  RKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPVTKECADLWPR 131
>sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A)
          Length = 140

 Score =  174 bits (442), Expect = 4e-44
 Identities = 81/107 (75%), Positives = 95/107 (88%)
 Frame = +2

Query: 2   VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 181
           VINCADN+GAKN+Y+I+V G + RLNRLPAA VGDM V +VKKGKPELRKKV+  VVIRQ
Sbjct: 25  VINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQ 84

Query: 182 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 322
           RK ++R+DG  + FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 85  RKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A)
          Length = 140

 Score =  174 bits (441), Expect = 6e-44
 Identities = 81/107 (75%), Positives = 95/107 (88%)
 Frame = +2

Query: 2   VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 181
           V+NCADN+GAKN+Y+I+V G + RLNRLPAA VGDM V +VKKGKPELRKKV+  VVIRQ
Sbjct: 25  VMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQ 84

Query: 182 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 322
           RK ++R+DG  I FEDNAGV+VNNKGEMKGSAITGPVAKECAD+WP+
Sbjct: 85  RKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23
          Length = 140

 Score =  173 bits (439), Expect = 1e-43
 Identities = 84/106 (79%), Positives = 92/106 (86%)
 Frame = +2

Query: 2   VINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQ 181
           VINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +VKKGKP LRKKV   VVIRQ
Sbjct: 25  VINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPXLRKKVHPAVVIRQ 84

Query: 182 RKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWP 319
           RK Y+RKDG  + FEDNAGV+VNNKGEMKGSAITGPV KECAD+WP
Sbjct: 85  RKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVXKECADLWP 130
>sp|Q07760|RL23_TOBAC 60S ribosomal protein L23
          Length = 140

 Score =  168 bits (426), Expect = 3e-42
 Identities = 78/106 (73%), Positives = 93/106 (87%)
 Frame = +2

Query: 5   INCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQR 184
           INCADN+GAKN+YIISV G K RLNRLP+A VGDMV+ +VKKGKP+LRKKV+  VV+RQR
Sbjct: 26  INCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQR 85

Query: 185 KLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKECADMWPK 322
           K ++RKDG  + FEDNAGV+VN KGEMKGSAITGP+ KECAD+WP+
Sbjct: 86  KPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPR 131
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,694,090
Number of Sequences: 369166
Number of extensions: 821411
Number of successful extensions: 2097
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2025
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)