Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_G09
(768 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 364 e-100
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 364 e-100
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 363 e-100
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 360 2e-99
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 358 1e-98
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 358 1e-98
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 357 2e-98
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 357 2e-98
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 356 3e-98
sp|Q92005|EF1A_BRARE Elongation factor 1-alpha (EF-1-alpha) 356 4e-98
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 364 bits (934), Expect = e-100
Identities = 173/212 (81%), Positives = 195/212 (91%)
Frame = +2
Query: 2 TLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLT 181
+LL+ALD++ PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETGIL+PGMVVTFAP +T
Sbjct: 227 SLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNIT 286
Query: 182 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVII 361
TEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK+IRRGNVC DSKSDP ++A F +QVII
Sbjct: 287 TEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVII 346
Query: 362 MNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVP 541
+NHPG+I AGYSPV+DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP
Sbjct: 347 LNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVP 406
Query: 542 SKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 637
KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 407 GKPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 364 bits (934), Expect = e-100
Identities = 172/212 (81%), Positives = 196/212 (92%)
Frame = +2
Query: 2 TLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLT 181
TLL+ALDS+ PP RPT+KPLRLPLQDVYKIGGIGTVPVGRVETGILKPGM+VTFAPQ LT
Sbjct: 227 TLLEALDSVVPPQRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMIVTFAPQNLT 286
Query: 182 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVII 361
TEVKSVEMHHEAL EALPGDNVGFN+KN+S+K+IRRG+V SDSK+DPA++ F AQVII
Sbjct: 287 TEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQVII 346
Query: 362 MNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVP 541
MNHPG+I AGY+PVLDCHTAHIACKFAEL +K+DRRSGK +ED PK KSGDAG++ L+P
Sbjct: 347 MNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIP 406
Query: 542 SKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 637
+KP+CVETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 407 TKPLCVETFTEYPPLGRFAVRDMRQTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 363 bits (931), Expect = e-100
Identities = 172/212 (81%), Positives = 195/212 (91%)
Frame = +2
Query: 2 TLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLT 181
+LL+ALD++ PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETGIL+PGMVVTFAP +T
Sbjct: 227 SLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNIT 286
Query: 182 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVII 361
TEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK+IRRGNVC DSK+DP ++A F +QVII
Sbjct: 287 TEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVII 346
Query: 362 MNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVP 541
+NHPG+I AGYSPV+DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP
Sbjct: 347 LNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVP 406
Query: 542 SKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 637
KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 407 GKPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 360 bits (924), Expect = 2e-99
Identities = 172/212 (81%), Positives = 190/212 (89%)
Frame = +2
Query: 2 TLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLT 181
TLL+ALD + PP RPTNKPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGM+VTFAP +T
Sbjct: 227 TLLEALDCIIPPQRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFAPSNVT 286
Query: 182 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVII 361
TEVKSVEMHHEAL EALPGDNVGFN+KN+SVK+IRRGNV DSK+DP QA F AQVII
Sbjct: 287 TEVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVII 346
Query: 362 MNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVP 541
+NHPG+I AGY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V ++P
Sbjct: 347 LNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIP 406
Query: 542 SKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 637
KPMCVETFS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 407 GKPMCVETFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 358 bits (918), Expect = 1e-98
Identities = 172/212 (81%), Positives = 192/212 (90%)
Frame = +2
Query: 2 TLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLT 181
TLL+ALD + PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP +T
Sbjct: 227 TLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVT 286
Query: 182 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVII 361
TEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII
Sbjct: 287 TEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVII 346
Query: 362 MNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVP 541
+NHPG+I AGY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP
Sbjct: 347 LNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVP 406
Query: 542 SKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 637
KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 407 GKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 358 bits (918), Expect = 1e-98
Identities = 172/212 (81%), Positives = 192/212 (90%)
Frame = +2
Query: 2 TLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLT 181
TLL+ALD + PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP +T
Sbjct: 227 TLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVT 286
Query: 182 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVII 361
TEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII
Sbjct: 287 TEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVII 346
Query: 362 MNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVP 541
+NHPG+I AGY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP
Sbjct: 347 LNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVP 406
Query: 542 SKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 637
KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 407 GKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 357 bits (917), Expect = 2e-98
Identities = 171/212 (80%), Positives = 192/212 (90%)
Frame = +2
Query: 2 TLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLT 181
TLL+ALD + PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP +T
Sbjct: 227 TLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVT 286
Query: 182 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVII 361
TEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII
Sbjct: 287 TEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVII 346
Query: 362 MNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVP 541
+NHPG+I AGY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V ++P
Sbjct: 347 LNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMIP 406
Query: 542 SKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 637
KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 407 GKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 357 bits (917), Expect = 2e-98
Identities = 166/212 (78%), Positives = 195/212 (91%)
Frame = +2
Query: 2 TLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLT 181
TLLDA+D+++PP RP++KPLRLPLQDVYKIGGIGTVPVGRVETG++K GMVVTFAP +T
Sbjct: 225 TLLDAIDAIDPPQRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKAGMVVTFAPANVT 284
Query: 182 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVII 361
TEVKSVEMHHE L E LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA++A F AQVI+
Sbjct: 285 TEVKSVEMHHEQLVEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIV 344
Query: 362 MNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVP 541
+NHPG+I AGY+PVLDCHTAHIACKFAEL++KIDRRSGK LED PK KSGD+ +V+++P
Sbjct: 345 LNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIP 404
Query: 542 SKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 637
SKPMCVE +++YPPLGRFAVRDM+QTVAVGVI
Sbjct: 405 SKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVI 436
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 356 bits (914), Expect = 3e-98
Identities = 171/212 (80%), Positives = 192/212 (90%)
Frame = +2
Query: 2 TLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLT 181
TLL+ALD + PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPG+VVTFAP +T
Sbjct: 227 TLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGVVVTFAPVNVT 286
Query: 182 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVII 361
TEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII
Sbjct: 287 TEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVII 346
Query: 362 MNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVP 541
+NHPG+I AGY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP
Sbjct: 347 LNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVP 406
Query: 542 SKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 637
KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 407 GKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|Q92005|EF1A_BRARE Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 356 bits (913), Expect = 4e-98
Identities = 171/212 (80%), Positives = 191/212 (90%)
Frame = +2
Query: 2 TLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLT 181
TLLDALD++ PP+RPT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP +T
Sbjct: 227 TLLDALDAILPPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPANVT 286
Query: 182 TEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQVII 361
TEVKSVEMHHE+LTEA PGDNVGFN+KNVSVK+IRRGNV DSK+DP +A +F AQVII
Sbjct: 287 TEVKSVEMHHESLTEATPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPMEAANFNAQVII 346
Query: 362 MNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVRLVP 541
+NHPG+I GY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +VP
Sbjct: 347 LNHPGQISQGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVP 406
Query: 542 SKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 637
KPMCVE+FS YPPLGRFAVRDM+QTVAVGVI
Sbjct: 407 GKPMCVESFSTYPPLGRFAVRDMRQTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,640,000
Number of Sequences: 369166
Number of extensions: 1727751
Number of successful extensions: 5714
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5414
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)