Planarian EST Database


Dr_sW_021_G06

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_021_G06
         (848 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P61589|RHOA_RAT  Transforming protein RhoA >gi|13633865|s...   310   3e-84
sp|P61586|RHOA_HUMAN  Transforming protein RhoA (H12) >gi|47...   310   4e-84
sp|P01122|RHO_APLCA  RAS-like GTP-binding protein RHO             308   1e-83
sp|P24406|RHOA_CANFA  Transforming protein RhoA (Rho1)            307   2e-83
sp|P48148|RHO1_DROME  Ras-like GTP-binding protein Rho1           307   2e-83
sp|Q22038|RHOA_CAEEL  RAS-like GTP-binding protein RhoA           301   1e-81
sp|P08134|RHOC_HUMAN  Rho-related GTP-binding protein RhoC (...   301   2e-81
sp|P62747|RHOB_RAT  Rho-related GTP-binding protein RhoB >gi...   295   8e-80
sp|P22122|RHO_DISOM  RAS-like GTP-binding protein O-RHO           295   1e-79
sp|Q9C3Y4|RHOA_EMENI  Protein rhoA (Rho1 protein homolog)         256   6e-68
>sp|P61589|RHOA_RAT Transforming protein RhoA
 sp|Q9QUI0|RHOA_MOUSE Transforming protein RhoA
          Length = 193

 Score =  310 bits (794), Expect = 3e-84
 Identities = 156/191 (81%), Positives = 167/191 (87%), Gaps = 1/191 (0%)
 Frame = +3

Query: 36  SIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKSVELALWDTAG 215
           +IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD K VELALWDTAG
Sbjct: 3   AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 62

Query: 216 QEDYDRLRPLSYPDTDVILMCFSIDSIDSLENIPEKWTPEVKHFCQNVPIILVGNKKDLR 395
           QEDYDRLRPLSYPDTDVILMCFSIDS DSLENIPEKWTPEVKHFC NVPIILVGNKKDLR
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122

Query: 396 NEESSRKD-GKNKVEIVKFEDGKAMAERIGAFAYIECSAKTKDGVREVFETATKAALQSX 572
           N+E +R++  K K E VK E+G+ MA RIGAF Y+ECSAKTKDGVREVFE AT+AALQ+ 
Sbjct: 123 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR 182

Query: 573 XXXXGFKCELL 605
                  C +L
Sbjct: 183 RGKKKSGCLIL 193
>sp|P61586|RHOA_HUMAN Transforming protein RhoA (H12)
 sp|P61585|RHOA_BOVIN Transforming protein RhoA (Gb) (p21)
          Length = 193

 Score =  310 bits (793), Expect = 4e-84
 Identities = 154/179 (86%), Positives = 164/179 (91%), Gaps = 1/179 (0%)
 Frame = +3

Query: 36  SIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKSVELALWDTAG 215
           +IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD K VELALWDTAG
Sbjct: 3   AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 62

Query: 216 QEDYDRLRPLSYPDTDVILMCFSIDSIDSLENIPEKWTPEVKHFCQNVPIILVGNKKDLR 395
           QEDYDRLRPLSYPDTDVILMCFSIDS DSLENIPEKWTPEVKHFC NVPIILVGNKKDLR
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122

Query: 396 NEESSRKD-GKNKVEIVKFEDGKAMAERIGAFAYIECSAKTKDGVREVFETATKAALQS 569
           N+E +R++  K K E VK E+G+ MA RIGAF Y+ECSAKTKDGVREVFE AT+AALQ+
Sbjct: 123 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA 181
>sp|P01122|RHO_APLCA RAS-like GTP-binding protein RHO
          Length = 192

 Score =  308 bits (789), Expect = 1e-83
 Identities = 151/178 (84%), Positives = 167/178 (93%), Gaps = 1/178 (0%)
 Frame = +3

Query: 36  SIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKSVELALWDTAG 215
           +IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD K VELALWDTAG
Sbjct: 3   AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 62

Query: 216 QEDYDRLRPLSYPDTDVILMCFSIDSIDSLENIPEKWTPEVKHFCQNVPIILVGNKKDLR 395
           QEDYDRLRPLSYPDTDVILMCFSIDS DSLENIPEKWTPEV+HFC NVPIILVGNKKDLR
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKKDLR 122

Query: 396 NEESSRKD-GKNKVEIVKFEDGKAMAERIGAFAYIECSAKTKDGVREVFETATKAALQ 566
           N+ES++++  K K E V+ EDG+AMAE+I A++Y+ECSAKTK+GVR+VFETAT+AALQ
Sbjct: 123 NDESTKRELMKMKQEPVRPEDGRAMAEKINAYSYLECSAKTKEGVRDVFETATRAALQ 180
>sp|P24406|RHOA_CANFA Transforming protein RhoA (Rho1)
          Length = 193

 Score =  307 bits (787), Expect = 2e-83
 Identities = 153/179 (85%), Positives = 163/179 (91%), Gaps = 1/179 (0%)
 Frame = +3

Query: 36  SIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKSVELALWDTAG 215
           +IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD K VELALWDTAG
Sbjct: 3   AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 62

Query: 216 QEDYDRLRPLSYPDTDVILMCFSIDSIDSLENIPEKWTPEVKHFCQNVPIILVGNKKDLR 395
           QEDYDRLRPLSYPDTDVILMCFSIDS DSLENIPEKWTPEVKHFC NVPIILVGNKKDLR
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122

Query: 396 NEESSRKD-GKNKVEIVKFEDGKAMAERIGAFAYIECSAKTKDGVREVFETATKAALQS 569
           N+E +R++  K K E VK  +G+ MA RIGAF Y+ECSAKTKDGVREVFE AT+AALQ+
Sbjct: 123 NDEHTRRELAKMKQEPVKPTEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA 181
>sp|P48148|RHO1_DROME Ras-like GTP-binding protein Rho1
          Length = 192

 Score =  307 bits (787), Expect = 2e-83
 Identities = 151/179 (84%), Positives = 166/179 (92%), Gaps = 1/179 (0%)
 Frame = +3

Query: 33  TSIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKSVELALWDTA 212
           T+IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD K VELALWDTA
Sbjct: 2   TTIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTA 61

Query: 213 GQEDYDRLRPLSYPDTDVILMCFSIDSIDSLENIPEKWTPEVKHFCQNVPIILVGNKKDL 392
           GQEDYDRLRPLSYPDTDVILMCFS+DS DSLENIPEKWTPEVKHFC NVPIILVGNKKDL
Sbjct: 62  GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121

Query: 393 RNEESSRKD-GKNKVEIVKFEDGKAMAERIGAFAYIECSAKTKDGVREVFETATKAALQ 566
           RN+ ++ +D  K K E VK ++G+AMAE+I AFAY+ECSAK+K+GVR+VFETAT+AALQ
Sbjct: 122 RNDPNTIRDLAKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRDVFETATRAALQ 180
>sp|Q22038|RHOA_CAEEL RAS-like GTP-binding protein RhoA
          Length = 192

 Score =  301 bits (772), Expect = 1e-81
 Identities = 152/191 (79%), Positives = 168/191 (87%), Gaps = 1/191 (0%)
 Frame = +3

Query: 36  SIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKSVELALWDTAG 215
           +IRKKLVIVGDGACGKTCLLIVFSKDQFP+VYVPTVFENYVADIEVD K VELALWDTAG
Sbjct: 3   AIRKKLVIVGDGACGKTCLLIVFSKDQFPDVYVPTVFENYVADIEVDGKQVELALWDTAG 62

Query: 216 QEDYDRLRPLSYPDTDVILMCFSIDSIDSLENIPEKWTPEVKHFCQNVPIILVGNKKDLR 395
           QEDYDRLRPLSYPDTDVILMCFSIDS DSLENIPEKWTPEV+HFC NVPIILVGNK+DLR
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKRDLR 122

Query: 396 NE-ESSRKDGKNKVEIVKFEDGKAMAERIGAFAYIECSAKTKDGVREVFETATKAALQSX 572
           ++ ++ R+  K K E VK E G+A+AE+IGAFAY+ECSAKTKDG+REVFE AT+AALQ  
Sbjct: 123 SDPQTVRELAKMKQEPVKPEQGRAIAEQIGAFAYLECSAKTKDGIREVFEKATQAALQQK 182

Query: 573 XXXXGFKCELL 605
                 KC +L
Sbjct: 183 KKKKS-KCMIL 192
>sp|P08134|RHOC_HUMAN Rho-related GTP-binding protein RhoC (H9)
 sp|Q62159|RHOC_MOUSE Rho-related GTP-binding protein RhoC (Silica-induced gene 61
           protein) (SIG-61)
          Length = 193

 Score =  301 bits (771), Expect = 2e-81
 Identities = 148/178 (83%), Positives = 160/178 (89%), Gaps = 1/178 (0%)
 Frame = +3

Query: 36  SIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKSVELALWDTAG 215
           +IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY+ADIEVD K VELALWDTAG
Sbjct: 3   AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAG 62

Query: 216 QEDYDRLRPLSYPDTDVILMCFSIDSIDSLENIPEKWTPEVKHFCQNVPIILVGNKKDLR 395
           QEDYDRLRPLSYPDTDVILMCFSIDS DSLENIPEKWTPEVKHFC NVPIILVGNKKDLR
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122

Query: 396 NEESSRKD-GKNKVEIVKFEDGKAMAERIGAFAYIECSAKTKDGVREVFETATKAALQ 566
            +E +R++  K K E V+ E+G+ MA RI AF Y+ECSAKTK+GVREVFE AT+A LQ
Sbjct: 123 QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180
>sp|P62747|RHOB_RAT Rho-related GTP-binding protein RhoB
 sp|P62746|RHOB_MOUSE Rho-related GTP-binding protein RhoB
 sp|P62745|RHOB_HUMAN Rho-related GTP-binding protein RhoB (H6)
          Length = 196

 Score =  295 bits (756), Expect = 8e-80
 Identities = 145/178 (81%), Positives = 160/178 (89%), Gaps = 1/178 (0%)
 Frame = +3

Query: 36  SIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKSVELALWDTAG 215
           +IRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENYVADIEVD K VELALWDTAG
Sbjct: 3   AIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 62

Query: 216 QEDYDRLRPLSYPDTDVILMCFSIDSIDSLENIPEKWTPEVKHFCQNVPIILVGNKKDLR 395
           QEDYDRLRPLSYPDTDVILMCFS+DS DSLENIPEKW PEVKHFC NVPIILV NKKDLR
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR 122

Query: 396 NEESSRKD-GKNKVEIVKFEDGKAMAERIGAFAYIECSAKTKDGVREVFETATKAALQ 566
           ++E  R +  + K E V+ +DG+AMA RI A+ Y+ECSAKTK+GVREVFETAT+AALQ
Sbjct: 123 SDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 180
>sp|P22122|RHO_DISOM RAS-like GTP-binding protein O-RHO
          Length = 192

 Score =  295 bits (755), Expect = 1e-79
 Identities = 148/190 (77%), Positives = 159/190 (83%)
 Frame = +3

Query: 36  SIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKSVELALWDTAG 215
           +IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD K VELALWDTAG
Sbjct: 3   AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 62

Query: 216 QEDYDRLRPLSYPDTDVILMCFSIDSIDSLENIPEKWTPEVKHFCQNVPIILVGNKKDLR 395
           QEDYDRLRPLSYPDTDVILMCFSIDS DSLENIPEKWTPEVKHFC N+PIILVGNKK   
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNIPIILVGNKKTAG 122

Query: 396 NEESSRKDGKNKVEIVKFEDGKAMAERIGAFAYIECSAKTKDGVREVFETATKAALQSXX 575
           +E + R+  K K E VK +D K M  RI AF Y+ECSAKTK+GVREVFE A++AALQ+  
Sbjct: 123 DEHTRRELAKMKQEPVKPDDAKEMGSRIKAFGYLECSAKTKEGVREVFELASRAALQAKK 182

Query: 576 XXXGFKCELL 605
                 C LL
Sbjct: 183 TKSKSPCLLL 192
>sp|Q9C3Y4|RHOA_EMENI Protein rhoA (Rho1 protein homolog)
          Length = 193

 Score =  256 bits (654), Expect = 6e-68
 Identities = 126/190 (66%), Positives = 152/190 (80%), Gaps = 1/190 (0%)
 Frame = +3

Query: 39  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKSVELALWDTAGQ 218
           IR+KLVIVGDGACGKTCLLIVFSK  FPEVYVPTVFENYVAD+EVD K VELALWDTAGQ
Sbjct: 4   IRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQ 63

Query: 219 EDYDRLRPLSYPDTDVILMCFSIDSIDSLENIPEKWTPEVKHFCQNVPIILVGNKKDLRN 398
           EDYDRLRPLSYPD+ VIL+CF++DS DSL+N+ EKW  EV HFCQ +PIILVG KKDLR+
Sbjct: 64  EDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCQGLPIILVGCKKDLRH 123

Query: 399 EESSRKD-GKNKVEIVKFEDGKAMAERIGAFAYIECSAKTKDGVREVFETATKAALQSXX 575
           +  + ++  K   + V  E G+ + ++IGA+ Y+ECSA+T +GVREVFE AT+AAL +  
Sbjct: 124 DPKTIEELNKTSQKPVTPEQGEEVRKKIGAYKYLECSARTNEGVREVFEAATRAALLTKT 183

Query: 576 XXXGFKCELL 605
                KC +L
Sbjct: 184 HKSKKKCSIL 193
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,694,156
Number of Sequences: 369166
Number of extensions: 1513470
Number of successful extensions: 6052
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5380
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)