Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_F04
(179 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UHD9|UBQL2_HUMAN Ubiquilin-2 (Protein linking IAP with... 38 0.006
sp|Q9QZM0|UBQL2_MOUSE Ubiquilin-2 (Protein linking IAP with... 36 0.024
sp|P35555|FBN1_HUMAN Fibrillin-1 precursor 35 0.069
sp|P39060|COIA1_HUMAN Collagen alpha 1(XVIII) chain precurs... 33 0.20
sp|Q61554|FBN1_MOUSE Fibrillin-1 precursor 33 0.26
sp|Q96A84|EMID1_HUMAN EMI domain containing protein 1 precu... 32 0.34
sp|P22577|YDH3_SHV2C Hypothetical 9.5 kDa protein in DHFR 3... 32 0.45
sp|Q28247|CO4A5_CANFA Collagen alpha 5(IV) chain precursor 32 0.45
sp|Q9TV36|FBN1_PIG Fibrillin-1 precursor 32 0.45
sp|P13942|COBA2_HUMAN Collagen alpha 2(XI) chain precursor 32 0.45
>sp|Q9UHD9|UBQL2_HUMAN Ubiquilin-2 (Protein linking IAP with cytoskeleton-2) (PLIC-2)
(hPLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2
homolog) (Chap1)
Length = 624
Score = 38.1 bits (87), Expect = 0.006
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 96 PGCPLEPSGPTIPIGPVGPLSPILPTIPGFP 4
P P+ P GP +P P+GP+ PI PT P P
Sbjct: 494 PVTPIGPIGPIVPFTPIGPIGPIGPTGPAAP 524
Score = 34.7 bits (78), Expect = 0.069
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 93 GCPLEPSGPTIPIGPVGPLSPILPTIPGFPL 1
G + P GP PIGP+GP+ P P P P+
Sbjct: 486 GTAIGPVGPVTPIGPIGPIVPFTPIGPIGPI 516
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -3
Query: 96 PGCPLEPSGPTIPIGPVGPLSPILPTIPGFP 4
P P P GP PIGP GP +P T G P
Sbjct: 503 PIVPFTPIGPIGPIGPTGPAAPPGSTGSGGP 533
>sp|Q9QZM0|UBQL2_MOUSE Ubiquilin-2 (Protein linking IAP with cytoskeleton-2) (PLIC-2)
(Ubiquitin-like product Chap1/Dsk2) (DSK2 homolog)
(Chap1)
Length = 638
Score = 36.2 bits (82), Expect = 0.024
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 96 PGCPLEPSGPTIPIGPVGPLSPILPTIP 13
P P+ P GP +P P+GP+ PI PT P
Sbjct: 508 PVTPIGPIGPIVPFTPIGPIGPIGPTGP 535
Score = 35.0 bits (79), Expect = 0.053
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 93 GCPLEPSGPTIPIGPVGPLSPILPTIPGFPL 1
G + P GP PIGP+GP+ P P P P+
Sbjct: 500 GTAITPVGPVTPIGPIGPIVPFTPIGPIGPI 530
Score = 29.6 bits (65), Expect = 2.2
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 96 PGCPLEPSGPTIPIGPVGPLSPILPTIPGFP 4
P P P GP PIGP GP S T G P
Sbjct: 517 PIVPFTPIGPIGPIGPTGPASSPGSTGTGIP 547
>sp|P35555|FBN1_HUMAN Fibrillin-1 precursor
Length = 2871
Score = 34.7 bits (78), Expect = 0.069
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 78 PSGPTIPIGPVGPLSPILPTIPGFP 4
P P P P+GP+ P+LP PGFP
Sbjct: 396 PGRPEYPPPPLGPIPPVLPVPPGFP 420
>sp|P39060|COIA1_HUMAN Collagen alpha 1(XVIII) chain precursor [Contains: Endostatin]
Length = 1516
Score = 33.1 bits (74), Expect = 0.20
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -3
Query: 96 PGCPLEPSGPTIP--IGPVGPLSPILPTIPG 10
PG P P P +P + P+GP P L T+PG
Sbjct: 537 PGSPCLPGPPGLPCPVSPLGPAGPALQTVPG 567
>sp|Q61554|FBN1_MOUSE Fibrillin-1 precursor
Length = 2871
Score = 32.7 bits (73), Expect = 0.26
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 78 PSGPTIPIGPVGPLSPILPTIPGFP 4
P P P P+GPL P+ P PG+P
Sbjct: 396 PGRPEYPPPPIGPLPPVQPVPPGYP 420
>sp|Q96A84|EMID1_HUMAN EMI domain containing protein 1 precursor (Emu1 protein) (Emilin
and multimerin-domain containing protein 1)
Length = 441
Score = 32.3 bits (72), Expect = 0.34
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 99 WPGCPLEPSGPTIPIGPVGPLSPILPTIPGFP 4
WP P P GP P+GP GP P +PG P
Sbjct: 288 WPQGPTGPPGPPGPMGPPGPPGP--TGVPGSP 317
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 5 GNPGIVGNMGERGPTGPIG 61
G G VG GERGP GP G
Sbjct: 233 GRAGAVGTPGERGPPGPPG 251
>sp|P22577|YDH3_SHV2C Hypothetical 9.5 kDa protein in DHFR 3'region (ORF3)
Length = 103
Score = 32.0 bits (71), Expect = 0.45
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = -3
Query: 96 PGCPLEPSGPTIPIGPVGPLSPILPTIPGFP 4
PG P P GP P GP GP P P PG P
Sbjct: 30 PGGPGGPGGPGGPCGPGGPCGPGGPCGPGGP 60
Score = 31.6 bits (70), Expect = 0.59
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = -3
Query: 96 PGCPLEPSGPTIPIGPVGPLSPILPTIPGFP 4
PG P P GP P GP GP P P PG P
Sbjct: 33 PGGPGGPGGPCGPGGPCGPGGPCGPGGPGGP 63
Score = 31.2 bits (69), Expect = 0.77
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = -3
Query: 96 PGCPLEPSGPTIPIGPVGPLSPILPTIPGFP 4
PG P P GP P GP GP P P PG P
Sbjct: 36 PGGPGGPCGPGGPCGPGGPCGPGGPGGPGGP 66
Score = 30.8 bits (68), Expect = 1.0
Identities = 21/59 (35%), Positives = 22/59 (37%)
Frame = -3
Query: 177 PGSPTLPSKXXXXXXXXXXXXXXXPDWPGCPLEPSGPTIPIGPVGPLSPILPTIPGFPL 1
PGSP P P PG P P GP P GP GP P P P P+
Sbjct: 12 PGSPGGPGGPGGPGGPGGPGGPGGPGGPGGPCGPGGPCGPGGPCGPGGPGGPGGPRSPV 70
>sp|Q28247|CO4A5_CANFA Collagen alpha 5(IV) chain precursor
Length = 1691
Score = 32.0 bits (71), Expect = 0.45
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 5 GNPGIVGNMGERGPTGPIG 61
GNPG+ G G RGP GP+G
Sbjct: 606 GNPGLPGLPGNRGPMGPVG 624
Score = 28.9 bits (63), Expect = 3.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 2 RGNPGIVGNMGERGPTGPIGI 64
+GNPG G G +GP GP G+
Sbjct: 170 KGNPGYPGPPGIQGPAGPTGL 190
>sp|Q9TV36|FBN1_PIG Fibrillin-1 precursor
Length = 2871
Score = 32.0 bits (71), Expect = 0.45
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 78 PSGPTIPIGPVGPLSPILPTIPGFP 4
P P P P+GP+ P+ P PGFP
Sbjct: 396 PERPGYPSPPLGPIPPVHPVPPGFP 420
>sp|P13942|COBA2_HUMAN Collagen alpha 2(XI) chain precursor
Length = 1736
Score = 32.0 bits (71), Expect = 0.45
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 2 RGNPGIVGNMGERGPTGPIGI 64
+GNPG VG+ GERGP G G+
Sbjct: 416 QGNPGPVGDPGERGPPGRAGL 436
Score = 28.9 bits (63), Expect = 3.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 5 GNPGIVGNMGERGPTGPIG 61
G PG GN G GP GP+G
Sbjct: 697 GPPGTKGNQGPSGPQGPLG 715
Score = 28.9 bits (63), Expect = 3.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 5 GNPGIVGNMGERGPTGPIG 61
G PG+ GN G GP GP G
Sbjct: 997 GGPGLKGNEGPSGPPGPAG 1015
Score = 28.9 bits (63), Expect = 3.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 2 RGNPGIVGNMGERGPTGPIG 61
+G+PG +G G+ GP GP G
Sbjct: 1338 KGDPGAIGAPGKTGPVGPAG 1357
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 5 GNPGIVGNMGERGPTGPIG 61
G PG+VG G G TGP+G
Sbjct: 922 GPPGVVGPQGAAGETGPMG 940
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 5 GNPGIVGNMGERGPTGPIG 61
G PG G GE GP GP+G
Sbjct: 1300 GQPGSPGPTGENGPPGPLG 1318
Score = 28.1 bits (61), Expect = 6.5
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +2
Query: 2 RGNPGIVGNMGERGPTGPIG 61
RG G G GERGPTGP G
Sbjct: 828 RGLSGKSGPRGERGPTGPRG 847
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,299,525
Number of Sequences: 369166
Number of extensions: 324426
Number of successful extensions: 5649
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5435
length of database: 68,354,980
effective HSP length: 32
effective length of database: 62,443,460
effective search space used: 1685973420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)