Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_E23
(675 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36059|YKP1_YEAST Protein YKL151c 134 2e-31
sp|P32740|YNH2_CAEEL Hypothetical protein R107.2 in chromos... 128 1e-29
sp|P74217|Y1433_SYNY3 Hypothetical protein sll1433 74 3e-13
sp|P31806|YJEF_ECOLI Hypothetical protein yjeF 65 1e-10
sp|O06250|Y3433_MYCTU Hypothetical protein Rv3433c/MT3539 57 4e-08
sp|P96051|YFOL_STRTR Hypothetical protein in folD-pbp2B int... 54 5e-07
sp|Q58981|Y1586_METJA Hypothetical protein MJ1586 50 5e-06
sp|P37391|Y373_MYCLE Hypothetical protein ML0373 46 1e-04
sp|Q9WZR0|PYRG_THEMA CTP synthase (UTP--ammonia ligase) (CT... 34 0.40
sp|P36021|MOT8_HUMAN Monocarboxylate transporter 8 (MCT 8) ... 31 3.4
>sp|P36059|YKP1_YEAST Protein YKL151c
Length = 337
Score = 134 bits (337), Expect = 2e-31
Identities = 89/221 (40%), Positives = 124/221 (56%), Gaps = 25/221 (11%)
Frame = +2
Query: 11 YKGNAG-KICVIGGSKEYTGAPYFSAISALLSGADLVHVICPQDAAPIIKSYSPELIVHP 187
+KG +G ++C+IGG ++YTGAPYFSA + L G DL HVIC +A +IKSY+P L+VHP
Sbjct: 27 HKGQSGGRVCIIGGCEDYTGAPYFSANATALMGCDLTHVICEYNAGTVIKSYTPNLMVHP 86
Query: 188 IL-----------GTNRDECCKWLDKMHAVIIGPGLGRD--YIQESMDLIRYVKTQ---D 319
L R + LD++H V+IGPGLGRD ++ D+IRY+ +
Sbjct: 87 YLRMSNTKLDVDMDEQRKKINSLLDRIHVVVIGPGLGRDPLMLKSIKDIIRYILEKHEGK 146
Query: 320 IPLIVDADGLHLICLDPSIVSGYK-----KAILTPNINESKMLFEKVTKGTTFNFDMSVC 484
IPL++DADGL L+ D + K + ILTPN+ E K L + + K + +M
Sbjct: 147 IPLVIDADGLFLVTQDSEVKEMLKSYPKGRVILTPNVVEFKRLCDAIGKKGDSHSEMG-- 204
Query: 485 SQIACSLGNITIVAKGIHDMI--TDGTKDAICDI-RGSPRR 598
S IA L N +V KG D I D KD + + GS +R
Sbjct: 205 SLIAQEL-NCIVVEKGQSDKIFSPDSEKDMLTNSEEGSNKR 244
>sp|P32740|YNH2_CAEEL Hypothetical protein R107.2 in chromosome III
Length = 307
Score = 128 bits (322), Expect = 1e-29
Identities = 82/209 (39%), Positives = 112/209 (53%), Gaps = 13/209 (6%)
Frame = +2
Query: 14 KGNAGKICVIGGSKEYTGAPYFSAISALLSGADLVHVICPQDAAPIIKSYSPELIVHPIL 193
KG+ GK+ VIGGS EYTGAPYF+A SA GADL+H+ C DAA +IK YSP+LIVHP
Sbjct: 17 KGDCGKMGVIGGSLEYTGAPYFAASSASRLGADLIHIFCDPDAAQVIKGYSPDLIVHP-- 74
Query: 194 GTNRDECCKWLDKMHAVIIGPGLGR--DYIQESMDLIRYVKTQDIPLIVDADGLHLICLD 367
G + L +M A++IGPGLGR + +L +V+ +D+P ++D DGL +
Sbjct: 75 GMTANSIIPKLSRMDAIVIGPGLGRNPNIWPLMQELFEFVRNRDVPFVIDGDGLWFVSEH 134
Query: 368 -PSIVSGYKKAILTPNINESKMLFEKVTKGTTFNFDM------SVCSQIACSLG---NIT 517
+LTPNI E F ++ K D+ S +A L N+T
Sbjct: 135 IEKFPRQMSATVLTPNIVE----FSRLCKSALGEEDVLNVRNNSQLQHLAAELSRKMNVT 190
Query: 518 IVAKGIHDM-ITDGTKDAICDIRGSPRRC 601
I KG D+ +T + + C S RRC
Sbjct: 191 IYLKGEVDLVVTPNGEVSKCSTESSLRRC 219
>sp|P74217|Y1433_SYNY3 Hypothetical protein sll1433
Length = 524
Score = 74.3 bits (181), Expect = 3e-13
Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 7/192 (3%)
Frame = +2
Query: 5 IKYKGNAGKICVIGGSKEYTGAPYFSAISALLSGADLVHVICPQDAAPIIKSYSPELIVH 184
+ +K G + +I GS++Y G + + A SG +V V P ++ S PE++V
Sbjct: 245 VTHKYQQGHLLLICGSQQYAGGALLTTLGARASGVGMVTVAVPMGIKALLHSQCPEVLVK 304
Query: 185 PILGTNRDECCKW----LDKMHAVIIGPGLGRDYIQESMDLIRYVKTQDIPLIVDADGLH 352
+L T L + AV +GPGLG D L+ V + + PLI+DADGL+
Sbjct: 305 GLLETPSGAIAGLGNLDLSRYSAVALGPGLGSDV----GPLVEEVLSVNCPLILDADGLN 360
Query: 353 LIC---LDPSIVSGYKKAILTPNINESKMLFEKVTKGTTFNFDMSVCSQIACSLGNITIV 523
+ L P + +LTP+ E K LF + +G D Q A ++ T++
Sbjct: 361 QLAQQQLLPLLAVRTAPTVLTPHGGEFKRLFPDIDQG-----DRLTAVQTAAAMCQATVL 415
Query: 524 AKGIHDMITDGT 559
KG +I T
Sbjct: 416 LKGAKTVIASPT 427
>sp|P31806|YJEF_ECOLI Hypothetical protein yjeF
Length = 515
Score = 65.5 bits (158), Expect = 1e-10
Identities = 42/141 (29%), Positives = 74/141 (52%)
Frame = +2
Query: 11 YKGNAGKICVIGGSKEYTGAPYFSAISALLSGADLVHVICPQDAAPIIKSYSPELIVHPI 190
+KG+ G++ +IGG GA + +AL +GA LV V+ + + + PEL+VH +
Sbjct: 250 HKGDHGRLVIIGGDHGTAGAIRMTGEAALRAGAGLVRVLTRSENIAPLLTARPELMVHEL 309
Query: 191 LGTNRDECCKWLDKMHAVIIGPGLGRDYIQESMDLIRYVKTQDIPLIVDADGLHLICLDP 370
+ E +W D V+IGPGLG+ + ++ V+ P++ DAD L+L+ ++P
Sbjct: 310 TMDSLTESLEWAD---VVVIGPGLGQQ--EWGKKALQKVENFRKPMLWDADALNLLAINP 364
Query: 371 SIVSGYKKAILTPNINESKML 433
++TP+ E+ L
Sbjct: 365 ---DKRHNRVITPHPGEAARL 382
>sp|O06250|Y3433_MYCTU Hypothetical protein Rv3433c/MT3539
Length = 473
Score = 57.0 bits (136), Expect = 4e-08
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 1/181 (0%)
Frame = +2
Query: 14 KGNAGKICVIGGSKEYTGAPYFSAISALLSGADLVHVICPQDAAPIIKSYSPELIVHPIL 193
K G V+ GS Y GA +A+ + + +V A + ++ PE+I P
Sbjct: 227 KYTQGVTGVLAGSSTYPGAAVLCTGAAVAATSGMVRYAGTAHAE--VLAHWPEVIASPTP 284
Query: 194 GTNRDECCKWLDKMHAVIIGPGLGRDYIQESMDLIRYVKTQDIPLIVDADGLHLICLDPS 373
++ A ++GPGLG D + + + D+P++VDADGL ++ P
Sbjct: 285 AA--------AGRVQAWVVGPGLGTD--EAGAAALWFALDTDLPVLVDADGLTMLADHPD 334
Query: 374 IVSGYK-KAILTPNINESKMLFEKVTKGTTFNFDMSVCSQIACSLGNITIVAKGIHDMIT 550
+V+G +LTP+ E F ++ + + C Q+A +LG T++ KG +I
Sbjct: 335 LVAGRNAPTVLTPHAGE----FARLAGAPPGDDRVGACRQLADALG-ATVLLKGNVTVIA 389
Query: 551 D 553
D
Sbjct: 390 D 390
>sp|P96051|YFOL_STRTR Hypothetical protein in folD-pbp2B intergenic region (ORF1091)
Length = 278
Score = 53.5 bits (127), Expect = 5e-07
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Frame = +2
Query: 11 YKGNAGKICVIGGSKEYTGAPYFSAISALLSGADLVHVICPQDAAPIIKSYSPELIVHPI 190
+KG+ G++ ++GG Y GA +AI+ + SGA LV V ++ + ++ PE + +
Sbjct: 20 HKGSYGRVLLVGGLYPYGGAIIMAAIACVNSGAGLVTVATDRENIIALHAHLPEAMAFDL 79
Query: 191 LGTNRDECCKWLDKMHA---VIIGPGLGRDYIQE-SMDLIRYVKTQDIPLIVDADGLHLI 358
T R +LDK+ A ++IG GLG + + +++L+ + L+VD L+L+
Sbjct: 80 RETER-----FLDKLRAADVILIGSGLGEEETADWALELVLANIRSNQNLVVDGSALNLL 134
Query: 359 CLDPSIVSGYKKAILTPNINESKML 433
ILTP+ E + L
Sbjct: 135 AKKNQSSLPKCHLILTPHQKEWERL 159
>sp|Q58981|Y1586_METJA Hypothetical protein MJ1586
Length = 491
Score = 50.1 bits (118), Expect = 5e-06
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 5/184 (2%)
Frame = +2
Query: 11 YKGNAGKICVIGGSKEYTGAPYFSAISALLSGADLVHVICPQDAAPIIKSYSPELIVHPI 190
+KG GK+ +IGGSK++ GAP + ++A L DLV ++ I K PE I++ +
Sbjct: 248 HKGQNGKVLIIGGSKDFYGAPILAGLAA-LKIVDLVGIL--SVGKVIDKVNHPEFIMYRV 304
Query: 191 LG-----TNRDECCKWLDKMHAVIIGPGLGRDYIQESMDLIRYVKTQDIPLIVDADGLHL 355
G + D + K V++G GLG + ++ L ++ D +++DAD + +
Sbjct: 305 EGDYLSSQHVDYTLEIAKKYDVVVLGNGLGANNRTKAF-LNEFLAKYDGKVVIDADAIKV 363
Query: 356 ICLDPSIVSGYKKAILTPNINESKMLFEKVTKGTTFNFDMSVCSQIACSLGNITIVAKGI 535
I D + + I TP+ E + + D+ I TIV KG
Sbjct: 364 I--DYNNFEFSENYIFTPHKREFEYM----------GIDLDNIENI-----KSTIVLKGK 406
Query: 536 HDMI 547
+D+I
Sbjct: 407 YDII 410
>sp|P37391|Y373_MYCLE Hypothetical protein ML0373
Length = 473
Score = 45.8 bits (107), Expect = 1e-04
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 1/181 (0%)
Frame = +2
Query: 14 KGNAGKICVIGGSKEYTGAPYFSAISALLSGADLVHVICPQDAAPIIKSYSPELIVHPIL 193
K G V+ GS Y GA +A+ + + +V A + ++ PE+I
Sbjct: 227 KYTQGVTGVLAGSSTYPGAAVLCTGAAVAATSGMVRYA--GSAYTQVLAHWPEVIASAT- 283
Query: 194 GTNRDECCKWLDKMHAVIIGPGLGRDYIQESMDLIRYVKTQDIPLIVDADGLHLICLDPS 373
T W ++GPGLG D + + + D+P++VDADGL ++ P
Sbjct: 284 PTAAGRVQSW-------VVGPGLGIDATATAA--LWFALETDLPVLVDADGLTMLAAHPD 334
Query: 374 -IVSGYKKAILTPNINESKMLFEKVTKGTTFNFDMSVCSQIACSLGNITIVAKGIHDMIT 550
+++ +LTP+ +E F ++ + + C ++A S G T++ KG +I
Sbjct: 335 LVINRNAPTVLTPHASE----FARLAGTPPGDDRVGACRKLADSFG-ATVLLKGNVTVIA 389
Query: 551 D 553
D
Sbjct: 390 D 390
>sp|Q9WZR0|PYRG_THEMA CTP synthase (UTP--ammonia ligase) (CTP synthetase)
Length = 524
Score = 33.9 bits (76), Expect = 0.40
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 200 NRDECCKWLDKMHAVIIGPGLGRDYIQESMDLIRYVKTQDIPLIVDADGLHLICLD-PSI 376
N +E K LD+ A+II G GR ++ + I+Y + P++ G+ L+ ++
Sbjct: 323 NDEEVKKVLDEYDALIIPGGFGRRGVEGKIKAIKYARENKKPILGICLGMQLMVIEFARN 382
Query: 377 VSGYKKA 397
V GYK+A
Sbjct: 383 VFGYKEA 389
>sp|P36021|MOT8_HUMAN Monocarboxylate transporter 8 (MCT 8) (X-linked PEST-containing
transporter) (MCT 7)
Length = 613
Score = 30.8 bits (68), Expect = 3.4
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 254 PGLGRDYIQESMDLIRYVKTQDIPLIVDADGLHLICLDPSIVSGYKKAILTP 409
PGL + Y+Q L+ + + IPL D GL ++CL + G+ I+ P
Sbjct: 456 PGLKKIYLQVLSFLLLGLMSMMIPLCRDFGGLIVVCLFLGLCDGFFITIMAP 507
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,128,029
Number of Sequences: 369166
Number of extensions: 1662457
Number of successful extensions: 4452
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4442
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5684835195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)