Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_E21
(798 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 394 e-109
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 394 e-109
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 393 e-109
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 392 e-109
sp|P02550|TBA_PIG Tubulin alpha chain 391 e-108
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 391 e-108
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 390 e-108
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 390 e-108
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 390 e-108
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 389 e-108
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 394 bits (1013), Expect = e-109
Identities = 197/227 (86%), Positives = 202/227 (88%)
Frame = +1
Query: 1 IERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPVISA 180
IERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT+APVISA
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 181 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 360
EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 338
Query: 361 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 540
RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM
Sbjct: 339 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 541 YSKRAFCSLVCXXXXXXXXXXXEHVKIWLHFEKDYEEVGADSVENEG 681
Y+KRAF E + EKDYEEVG DSVE EG
Sbjct: 399 YAKRAFVHWY-VGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEG 444
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 394 bits (1013), Expect = e-109
Identities = 197/227 (86%), Positives = 202/227 (88%)
Frame = +1
Query: 1 IERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPVISA 180
IERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT+APVISA
Sbjct: 180 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 239
Query: 181 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 360
EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTK
Sbjct: 240 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 299
Query: 361 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 540
RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM
Sbjct: 300 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 359
Query: 541 YSKRAFCSLVCXXXXXXXXXXXEHVKIWLHFEKDYEEVGADSVENEG 681
Y+KRAF E + EKDYEEVG DSVE EG
Sbjct: 360 YAKRAFVHWY-VGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEG 405
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 393 bits (1010), Expect = e-109
Identities = 195/227 (85%), Positives = 201/227 (88%)
Frame = +1
Query: 1 IERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPVISA 180
IERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT+APVISA
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 181 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 360
EKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYM+CCMLYRGDVVPKDVNAAIATIKTK
Sbjct: 279 EKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTK 338
Query: 361 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 540
RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM
Sbjct: 339 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 541 YSKRAFCSLVCXXXXXXXXXXXEHVKIWLHFEKDYEEVGADSVENEG 681
Y+KRAF + EKDYEEVG DSVE EG
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDL-AALEKDYEEVGVDSVEGEG 444
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 392 bits (1008), Expect = e-109
Identities = 196/226 (86%), Positives = 200/226 (88%)
Frame = +1
Query: 1 IERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPVISA 180
IERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT+APVISA
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 181 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 360
EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 338
Query: 361 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 540
RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM
Sbjct: 339 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 541 YSKRAFCSLVCXXXXXXXXXXXEHVKIWLHFEKDYEEVGADSVENE 678
Y+KRAF + EKDYEEVG DSVE E
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDL-AALEKDYEEVGVDSVEAE 443
>sp|P02550|TBA_PIG Tubulin alpha chain
Length = 451
Score = 391 bits (1005), Expect = e-108
Identities = 195/227 (85%), Positives = 201/227 (88%)
Frame = +1
Query: 1 IERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPVISA 180
IERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPR HFPLAT+APVISA
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISA 278
Query: 181 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 360
EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 338
Query: 361 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 540
RTIQFVDWCPTGFKVGINY+PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM
Sbjct: 339 RTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 541 YSKRAFCSLVCXXXXXXXXXXXEHVKIWLHFEKDYEEVGADSVENEG 681
Y+KRAF E + EKDYEEVG DSVE EG
Sbjct: 399 YAKRAFVHWY-VGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEG 444
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 391 bits (1004), Expect = e-108
Identities = 194/227 (85%), Positives = 201/227 (88%)
Frame = +1
Query: 1 IERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPVISA 180
IERP+YTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT+APVISA
Sbjct: 219 IERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 181 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 360
EKAYHEQLSVAEITNACFEPANQ+VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 338
Query: 361 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 540
RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM
Sbjct: 339 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 541 YSKRAFCSLVCXXXXXXXXXXXEHVKIWLHFEKDYEEVGADSVENEG 681
Y+KRAF + EKDYEEVG DSV+ EG
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDL-AALEKDYEEVGVDSVDAEG 444
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 390 bits (1003), Expect = e-108
Identities = 195/227 (85%), Positives = 201/227 (88%)
Frame = +1
Query: 1 IERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPVISA 180
IERPTYTNLNRL+ QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT+APVISA
Sbjct: 219 IERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 181 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 360
EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 338
Query: 361 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 540
R+IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM
Sbjct: 339 RSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 541 YSKRAFCSLVCXXXXXXXXXXXEHVKIWLHFEKDYEEVGADSVENEG 681
Y+KRAF E + EKDYEEVG DSVE EG
Sbjct: 399 YAKRAFVHWY-VGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEG 444
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 390 bits (1001), Expect = e-108
Identities = 194/226 (85%), Positives = 198/226 (87%)
Frame = +1
Query: 1 IERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPVISA 180
IERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL T+APVISA
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 278
Query: 181 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 360
EKAYHE LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK
Sbjct: 279 EKAYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 338
Query: 361 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 540
RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM
Sbjct: 339 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 541 YSKRAFCSLVCXXXXXXXXXXXEHVKIWLHFEKDYEEVGADSVENE 678
Y+KRAF + EKDYEEVG DSVE E
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDL-AALEKDYEEVGVDSVEGE 443
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 390 bits (1001), Expect = e-108
Identities = 194/227 (85%), Positives = 199/227 (87%)
Frame = +1
Query: 1 IERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPVISA 180
IERPTYTNLNRL+GQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL T+APVISA
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 278
Query: 181 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 360
EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK
Sbjct: 279 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 338
Query: 361 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 540
RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM
Sbjct: 339 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 541 YSKRAFCSLVCXXXXXXXXXXXEHVKIWLHFEKDYEEVGADSVENEG 681
Y+KRAF + EKDYEEVG DS + EG
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDL-AALEKDYEEVGMDSGDGEG 444
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 389 bits (1000), Expect = e-108
Identities = 194/227 (85%), Positives = 201/227 (88%)
Frame = +1
Query: 1 IERPTYTNLNRLVGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAPVISA 180
IERPTYTNLNRL+ QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT+APVISA
Sbjct: 219 IERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 181 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 360
EKAYHEQLSV+EITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTK
Sbjct: 279 EKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTK 338
Query: 361 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 540
R+IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM
Sbjct: 339 RSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 398
Query: 541 YSKRAFCSLVCXXXXXXXXXXXEHVKIWLHFEKDYEEVGADSVENEG 681
Y+KRAF E + EKDYEEVG DSVE EG
Sbjct: 399 YAKRAFVHWY-VGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEG 444
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,834,181
Number of Sequences: 369166
Number of extensions: 1509787
Number of successful extensions: 4637
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4093
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)