Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_E20
(754 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UHB6|EPLIN_HUMAN Epithelial protein lost in neoplasm 78 3e-14
sp|Q9ERG0|EPLIN_MOUSE Epithelial protein lost in neoplasm (... 78 3e-14
sp|P29675|SF3_HELAN Pollen-specific protein SF3 57 4e-08
sp|P34416|LASP1_CAEEL LIM and SH3 domain protein F42H10.3 55 2e-07
sp|Q14847|LASP1_HUMAN LIM and SH3 domain protein 1 (LASP-1)... 53 8e-07
sp|Q99MZ8|LASP1_RAT LIM and SH3 domain protein 1 (LASP-1) 53 8e-07
sp|Q61792|LASP1_MOUSE LIM and SH3 domain protein 1 (LASP-1)... 53 1e-06
sp|O94851|MICA2_HUMAN Protein MICAL-2 51 4e-06
sp|Q8BML1|MICA2_MOUSE Protein MICAL-2 50 6e-06
sp|Q7RTP6|MICA3_HUMAN Protein MICAL-3 49 1e-05
>sp|Q9UHB6|EPLIN_HUMAN Epithelial protein lost in neoplasm
Length = 759
Score = 77.8 bits (190), Expect = 3e-14
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = +3
Query: 3 YPMEKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHYVELFKKRGRYDE 173
YPME+L N ++FH +CFRC+ C N LS G ++ HG+ YC PH+ +LFK +G YDE
Sbjct: 398 YPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 454
>sp|Q9ERG0|EPLIN_MOUSE Epithelial protein lost in neoplasm (mEPLIN)
Length = 753
Score = 77.8 bits (190), Expect = 3e-14
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = +3
Query: 3 YPMEKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHYVELFKKRGRYDE 173
YPME+L N ++FH +CFRC+ C N LS G ++ HG+ YC PH+ +LFK +G YDE
Sbjct: 396 YPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 452
>sp|P29675|SF3_HELAN Pollen-specific protein SF3
Length = 219
Score = 57.4 bits (137), Expect = 4e-08
Identities = 27/103 (26%), Positives = 50/103 (48%)
Frame = +3
Query: 3 YPMEKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHYVELFKKRGRYDEIDD 182
YP+E++ + +H+ CF+C +S N+ + G+ YC H+++LFKK+G Y +++
Sbjct: 118 YPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLE- 176
Query: 183 NIENEILATNDISDVLTDELPAPDTTKNILAKFRDLQTGGNSN 311
+E + A PA T+N + + Q N
Sbjct: 177 -VEETVAA------------PAESETQNTETQNAETQNADTQN 206
Score = 57.0 bits (136), Expect = 5e-08
Identities = 23/60 (38%), Positives = 35/60 (58%)
Frame = +3
Query: 3 YPMEKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHYVELFKKRGRYDEIDD 182
Y ++KL N +++HK CFRC C + L NF+ G YC H+ +LFK+ G ++ D
Sbjct: 19 YLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFD 78
>sp|P34416|LASP1_CAEEL LIM and SH3 domain protein F42H10.3
Length = 335
Score = 55.1 bits (131), Expect = 2e-07
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +3
Query: 3 YPMEKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHY 137
YP+E+L DK++HK CF+CT C L+ N+ +PYC PHY
Sbjct: 15 YPVEELKCLDKVWHKQCFKCTVCGMTLNMKNYKGYDKRPYCDPHY 59
>sp|Q14847|LASP1_HUMAN LIM and SH3 domain protein 1 (LASP-1) (MLN 50)
Length = 261
Score = 53.1 bits (126), Expect = 8e-07
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = +3
Query: 3 YPMEKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHY 137
YP EK++ DK +HK CF C CK L+ N+ KPYC HY
Sbjct: 13 YPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHY 57
>sp|Q99MZ8|LASP1_RAT LIM and SH3 domain protein 1 (LASP-1)
Length = 263
Score = 53.1 bits (126), Expect = 8e-07
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = +3
Query: 3 YPMEKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHY 137
YP EK++ DK +HK CF C CK L+ N+ KPYC HY
Sbjct: 13 YPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHY 57
>sp|Q61792|LASP1_MOUSE LIM and SH3 domain protein 1 (LASP-1) (MLN 50)
Length = 263
Score = 52.8 bits (125), Expect = 1e-06
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = +3
Query: 3 YPMEKLSTNDKIFHKTCFRCTKCKNALSTGNFSFNHGKPYCTPHY 137
YP EK++ DK +HK CF C CK L+ N+ KPYC HY
Sbjct: 13 YPTEKVNCLDKYWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHY 57
>sp|O94851|MICA2_HUMAN Protein MICAL-2
Length = 1124
Score = 50.8 bits (120), Expect = 4e-06
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +3
Query: 3 YPMEKLSTNDKIFHKTCFRCTKCKNALSTGNFSF--NHGKPYCTPHYVEL---FKKRGRY 167
Y ME+LS FH+ CFRC+ C L ++F + GK YC PH++ K+R R
Sbjct: 1010 YVMERLSAEGHFFHRECFRCSICATTLRLAAYTFDCDEGKFYCKPHFIHCKTNSKQRKRR 1069
Query: 168 DEIDDNIENE 197
E+ E E
Sbjct: 1070 AELKQQREEE 1079
>sp|Q8BML1|MICA2_MOUSE Protein MICAL-2
Length = 960
Score = 50.1 bits (118), Expect = 6e-06
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Frame = +3
Query: 3 YPMEKLSTNDKIFHKTCFRCTKCKNALSTGNFSF--NHGKPYCTPHYVEL---FKKRGRY 167
Y +E+LS FH+ CFRC+ C L ++F + GK YC PH+V K+R R
Sbjct: 761 YMIERLSAEGHFFHQECFRCSVCSATLRLAAYAFDCDEGKFYCKPHFVHCKTSSKQRKRR 820
Query: 168 DEIDDNIENE 197
E++ E E
Sbjct: 821 AELNQQREEE 830
>sp|Q7RTP6|MICA3_HUMAN Protein MICAL-3
Length = 976
Score = 48.9 bits (115), Expect = 1e-05
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 3 YPMEKLSTNDKIFHKTCFRCTKCKNALSTGNFSFN--HGKPYCTPHY 137
Y ME+LS K FH++CF+C C L ++++ GK YC PHY
Sbjct: 800 YVMERLSAEGKFFHRSCFKCEYCATTLRLSAYAYDIEDGKFYCKPHY 846
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,231,218
Number of Sequences: 369166
Number of extensions: 1901536
Number of successful extensions: 5503
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5498
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)