Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_E15
(526 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q27294|CAZ_DROME RNA-binding protein cabeza (Sarcoma-ass... 50 4e-06
sp|Q61545|EWS_MOUSE RNA-binding protein EWS 40 0.003
sp|Q01844|EWS_HUMAN RNA-binding protein EWS (EWS oncogene) ... 40 0.003
sp|P56959|FUS_MOUSE RNA-binding protein FUS (Pigpen protein) 40 0.004
sp|P35637|FUS_HUMAN RNA-binding protein FUS (Oncogene FUS) ... 40 0.004
sp|Q92804|RBP56_HUMAN TATA-binding protein associated facto... 40 0.004
sp|Q28009|FUS_BOVIN RNA-binding protein FUS (Pigpen protein) 40 0.004
sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding m... 39 0.008
sp|P70501|RBM10_RAT RNA-binding protein 10 (RNA-binding mot... 39 0.008
sp|O35986|ZN265_RAT Zinc finger protein 265 (Zinc finger, s... 37 0.029
>sp|Q27294|CAZ_DROME RNA-binding protein cabeza (Sarcoma-associated RNA-binding fly
homolog) (P19)
Length = 399
Score = 49.7 bits (117), Expect = 4e-06
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +1
Query: 145 DWICGKCNNNNFSWRESCNRCQEPKAEN 228
DW C CNN NF+WR CNRC+ PK ++
Sbjct: 278 DWKCNSCNNTNFAWRNECNRCKTPKGDD 305
>sp|Q61545|EWS_MOUSE RNA-binding protein EWS
Length = 655
Score = 40.0 bits (92), Expect = 0.003
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 145 DWICGK--CNNNNFSWRESCNRCQEPKAE 225
DW C C N NF+WR CN+C+ PK E
Sbjct: 520 DWQCPNPGCGNQNFAWRTECNQCKAPKPE 548
>sp|Q01844|EWS_HUMAN RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma breakpoint
region 1 protein)
Length = 656
Score = 40.0 bits (92), Expect = 0.003
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 145 DWICGK--CNNNNFSWRESCNRCQEPKAE 225
DW C C N NF+WR CN+C+ PK E
Sbjct: 521 DWQCPNPGCGNQNFAWRTECNQCKAPKPE 549
>sp|P56959|FUS_MOUSE RNA-binding protein FUS (Pigpen protein)
Length = 518
Score = 39.7 bits (91), Expect = 0.004
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 145 DWICGK--CNNNNFSWRESCNRCQEPKAE 225
DW C C N NFSWR CN+C+ PK +
Sbjct: 418 DWKCPNPTCENMNFSWRNECNQCKAPKPD 446
>sp|P35637|FUS_HUMAN RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS) (Translocated
in liposarcoma protein) (POMp75) (75 kDa DNA-pairing
protein)
Length = 526
Score = 39.7 bits (91), Expect = 0.004
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 145 DWICGK--CNNNNFSWRESCNRCQEPKAE 225
DW C C N NFSWR CN+C+ PK +
Sbjct: 425 DWKCPNPTCENMNFSWRNECNQCKAPKPD 453
>sp|Q92804|RBP56_HUMAN TATA-binding protein associated factor 2N (RNA-binding protein 56)
(TAFII68) (TAF(II)68)
Length = 592
Score = 39.7 bits (91), Expect = 0.004
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +1
Query: 145 DWICGK--CNNNNFSWRESCNRCQEPKAENA 231
DW+C C N NF+ R SCN+C EP+ E++
Sbjct: 357 DWVCPNPSCGNMNFARRNSCNQCNEPRPEDS 387
>sp|Q28009|FUS_BOVIN RNA-binding protein FUS (Pigpen protein)
Length = 512
Score = 39.7 bits (91), Expect = 0.004
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 145 DWICGK--CNNNNFSWRESCNRCQEPKAE 225
DW C C N NFSWR CN+C+ PK +
Sbjct: 411 DWKCPNPTCENMNFSWRNECNQCKAPKPD 439
>sp|P98175|RBM10_HUMAN RNA-binding protein 10 (RNA-binding motif protein 10) (DXS8237E)
Length = 929
Score = 38.9 bits (89), Expect = 0.008
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 145 DWICGKCNNNNFSWRESCNRCQEPKAE 225
DW+C KC NF RE C +C PK+E
Sbjct: 216 DWLCNKCGVQNFKRREKCFKCGVPKSE 242
>sp|P70501|RBM10_RAT RNA-binding protein 10 (RNA-binding motif protein 10) (S1-1
protein)
Length = 852
Score = 38.9 bits (89), Expect = 0.008
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 145 DWICGKCNNNNFSWRESCNRCQEPKAE 225
DW+C KC NF RE C +C PK+E
Sbjct: 139 DWLCNKCGVQNFKRREKCFKCGVPKSE 165
>sp|O35986|ZN265_RAT Zinc finger protein 265 (Zinc finger, splicing)
Length = 332
Score = 37.0 bits (84), Expect = 0.029
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 145 DWICG--KCNNNNFSWRESCNRCQEPKAENA 231
DWIC KC N NF+ R SCNRC K A
Sbjct: 12 DWICPDKKCGNVNFARRTSCNRCGREKTTEA 42
Score = 34.3 bits (77), Expect = 0.19
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 145 DWICGKCNNNNFSWRESCNRCQEPK 219
DW C C+N N++ R CN C PK
Sbjct: 68 DWQCKTCSNVNWARRSECNMCNTPK 92
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,944,883
Number of Sequences: 369166
Number of extensions: 1014116
Number of successful extensions: 2120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2120
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3502236525
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)