Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_E10
(758 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q38924|PPAF_ARATH Iron(III)-zinc(II) purple acid phospha... 87 5e-17
sp|P80366|PPAF_PHAVU Iron(III)-zinc(II) purple acid phospha... 84 5e-16
sp||Q687E1_2 [Segment 2 of 2] Nucleotide pyrophosphatase/ph... 66 1e-10
sp|Q12546|PPA_ASPFI Acid phosphatase precursor (pH 6-optimu... 61 3e-09
sp|Q50644|YP77_MYCTU Hypothetical protein Rv2577/MT2654 37 0.058
sp|Q49161|ACDA1_METMA Acetyl-CoA decarbonylase/synthase com... 33 0.83
sp|O80324|RNS6_PYRPY Ribonuclease S-6 precursor (S6-RNase) 31 3.2
sp|Q9MB14|PPO2_IPOBA Polyphenol oxidase II, chloroplast pre... 31 4.1
sp|Q62559|IFT52_MOUSE Intraflagellar transport 52 homolog (... 30 5.4
sp|P43309|PPO_MALDO Polyphenol oxidase, chloroplast precurs... 30 5.4
>sp|Q38924|PPAF_ARATH Iron(III)-zinc(II) purple acid phosphatase precursor (PAP)
Length = 469
Score = 87.0 bits (214), Expect = 5e-17
Identities = 63/218 (28%), Positives = 95/218 (43%), Gaps = 5/218 (2%)
Frame = +3
Query: 24 YFSFNVGYAHIIGFSSEFYYFTNYGFKQIENQYNWLLNDLKEANKPENRAVRPWIIAMGH 203
++S A+II S +++YG QY WL +L+ N+ E PW+I + H
Sbjct: 270 WYSIKRASAYIIVMSC----YSSYGI--YTPQYKWLEKELQGVNRTET----PWLIVLVH 319
Query: 204 RPMYCSNSDDGQHCENLINSIRVGMPISVHRY--GSMFVFGLEKLFYDYGVDLIFGAHEH 377
P Y S VH Y G E+ F Y VD++F H H
Sbjct: 320 SPFYSSY---------------------VHHYMEGETLRVMYEQWFVKYKVDVVFAGHVH 358
Query: 378 SYERMWPVYNL--KVCNGTEAPYTDPPAPVHIVTGSAGNQEG-EDPFYANKPDWSAFHSS 548
+YER V N+ + NG P +D AP++I G GN EG +P +SAF +
Sbjct: 359 AYERSERVSNIAYNIVNGLCEPISDESAPIYITIGDGGNSEGLLTDMMQPQPKYSAFREA 418
Query: 549 DYGYTRMNIMNSSHMYLEQVSDDLGGAVIDKILYIRNK 662
+G+ + I N +H Y + G AV +++ N+
Sbjct: 419 SFGHGLLEIKNRTHAYFSWNRNQDGNAVAADSVWLLNR 456
>sp|P80366|PPAF_PHAVU Iron(III)-zinc(II) purple acid phosphatase (PAP)
Length = 432
Score = 83.6 bits (205), Expect = 5e-16
Identities = 63/217 (29%), Positives = 93/217 (42%), Gaps = 3/217 (1%)
Frame = +3
Query: 24 YFSFNVGYAHIIGFSSEFYYFTNYGFKQIENQYNWLLNDLKEANKPENRAVRPWIIAMGH 203
++S AHII SS Y QY WL +L++ + E PW+I + H
Sbjct: 237 WYSIKRASAHIIVLSSHIAYGRG------TPQYTWLKKELRKVKRSET----PWLIVLMH 286
Query: 204 RPMYCSNSDDGQHCENLINSIRVGMPISVHRYGSMFVFGLEKLFYDYGVDLIFGAHEHSY 383
P+Y NS + E G E F Y VD++F H H+Y
Sbjct: 287 SPLY--NSYNHHFME-----------------GEAMRTKFEAWFVKYKVDVVFAGHVHAY 327
Query: 384 ERMWPVYNL--KVCNGTEAPYTDPPAPVHIVTGSAGNQEGEDP-FYANKPDWSAFHSSDY 554
ER V N+ K+ +G P D APV+I G AGN D +P++SAF + +
Sbjct: 328 ERSERVSNIAYKITDGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASF 387
Query: 555 GYTRMNIMNSSHMYLEQVSDDLGGAVIDKILYIRNKH 665
G+ +I N +H + + G AV ++ N+H
Sbjct: 388 GHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRH 424
>sp||Q687E1_2 [Segment 2 of 2] Nucleotide pyrophosphatase/phosphodiesterase
Length = 350
Score = 65.9 bits (159), Expect = 1e-10
Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 13/219 (5%)
Frame = +3
Query: 69 SEFYYFTNYGFKQI---ENQYNWLLND-----LKEANKPENRAVRPWIIAMGHRPM-YCS 221
+ F+Y +YG + +++++W ++E +R +PW+I HR + Y S
Sbjct: 143 ANFWYKVDYGMFRFCVGDSEHDWREGTPQYKFIEECLSTVDRKHQPWLIFTAHRVLGYSS 202
Query: 222 NS---DDGQHCENLINSIRVGMPISVHRYGSMFVFGLEKLFYDYGVDLIFGAHEHSYERM 392
NS D G E L+KL+ Y VD+ + H H+YER
Sbjct: 203 NSWYADQGSFEEPEGRE------------------SLQKLWQRYRVDIAYFGHVHNYERT 244
Query: 393 WPVYNLKVCNGTEAPYTDP-PAPVHIVTGSAGNQEGEDPFYANKPDWSAFHSSDYGYTRM 569
P+Y + N + Y+ + +V G G+ + P WS F DYG+T++
Sbjct: 245 CPLYQSQCVNADKTHYSGTMNGTIFVVAGGGGSHLSS--YTTAIPKWSIFRDHDYGFTKL 302
Query: 570 NIMNSSHMYLEQVSDDLGGAVIDKILYIRNKHGQIFNCV 686
N S + E + G V D I + + +CV
Sbjct: 303 TAFNHSSLLFEYMKSS-DGKVYDSFT-IHRDYRDVLSCV 339
>sp|Q12546|PPA_ASPFI Acid phosphatase precursor (pH 6-optimum acid phosphatase) (APase6)
Length = 614
Score = 61.2 bits (147), Expect = 3e-09
Identities = 49/192 (25%), Positives = 75/192 (39%), Gaps = 9/192 (4%)
Frame = +3
Query: 117 QYNWLLNDLKEANKPENRAVRPWIIAMGHRPMYCSNSDDGQHCENLINSIRVGMPISVHR 296
Q++WL DL + + R+ PW+I M HRPMY S +
Sbjct: 440 QWHWLQQDLAKVD----RSKTPWVIVMSHRPMYSS---------------------AYSS 474
Query: 297 YGSMFVFGLEKLFYDYGVDLIFGAHEHSYERMWP------VYNLKVCNGTEAPYTDPPAP 458
Y E L YGVD H H YER++P + + N + +
Sbjct: 475 YQLHVREAFEGLLLKYGVDAYLSGHIHWYERLYPLGANGTIDTAAIVNNNTYYAHNGKSI 534
Query: 459 VHIVTGSAGNQEGEDPFYANKPDWSAFHSSD---YGYTRMNIMNSSHMYLEQVSDDLGGA 629
HI+ G AGN E F + + D YG++++ I N + + E + D G
Sbjct: 535 THIINGMAGNIESHSEFSDGEGLTNITALLDKVHYGFSKLTIFNETALKWELIRGD-DGT 593
Query: 630 VIDKILYIRNKH 665
V D + ++ H
Sbjct: 594 VGDSLTLLKPSH 605
>sp|Q50644|YP77_MYCTU Hypothetical protein Rv2577/MT2654
Length = 529
Score = 37.0 bits (84), Expect = 0.058
Identities = 53/234 (22%), Positives = 78/234 (33%), Gaps = 48/234 (20%)
Frame = +3
Query: 18 GQYFSFNVGYAHIIGFSSEFYYFTNYGFKQIEN-----QYNWLLNDLKEANKPENRAVRP 182
G ++SF G +I ++ + + G + Q WL +L A +
Sbjct: 285 GLWYSFTAGSVRVISLHNDDVCYQDGGNSYVRGYSGGEQRRWLQAELANARRDSEI---D 341
Query: 183 WIIAMGHRPMYCSNSDDGQHCENLINSIRVGMPISVHRYGSMFVFGLEKLFYDYGVDLIF 362
W++ H+ S +DD + I + +P LF Y VDL+
Sbjct: 342 WVVVCMHQTAI-STADDNNGADLGIR--QEWLP----------------LFDQYQVDLVV 382
Query: 363 GAHEHSYERMWPVYNLKVCNGTEAPYTDPPAP--------------VHIVTGSAGNQEGE 500
HEH YER P L+ GT+ T P P VH+V G G +
Sbjct: 383 CGHEHHYERSHP---LRGALGTD---TRTPIPVDTRSDLIDSTRGTVHLVIGGGGTSKPT 436
Query: 501 -------------------DPFYANKPD--------WSAFHSSD--YGYTRMNI 575
DP KP WSAF D YG+ ++
Sbjct: 437 NALLFPQPRCQVITGVGDFDPAIRRKPSIFVLEDAPWSAFRDRDNPYGFVAFDV 490
>sp|Q49161|ACDA1_METMA Acetyl-CoA decarbonylase/synthase complex alpha subunit 1 (ACDS
complex alpha subunit 1) (ACDS complex carbon monoxide
dehydrogenase 1) (ACDS CODH 1)
Length = 806
Score = 33.1 bits (74), Expect = 0.83
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Frame = +3
Query: 342 YGVDLIFGAHEHSYER----------MWPVYNLKVCNGTEAPYTDPPAPVHIVTGSAGNQ 491
YG+ + GAH Y R W VY+ + NG E P PPAP ++T + Q
Sbjct: 648 YGIPAVLGAHSSKYRRALIAKNYDESKWKVYDAR--NGEEMPI--PPAPEFLLTTAETWQ 703
Query: 492 E 494
E
Sbjct: 704 E 704
>sp|O80324|RNS6_PYRPY Ribonuclease S-6 precursor (S6-RNase)
Length = 229
Score = 31.2 bits (69), Expect = 3.2
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +3
Query: 375 HSYERMWPVYNLKVCNGTEAPYTDPPAPVHIVTGS-AGNQEGEDPFY 512
++Y + Y VCN P DPP + V G N G+DP Y
Sbjct: 28 YNYFQFTQQYQPAVCNSNPTPCKDPPDKLFTVHGLWPSNDVGDDPIY 74
>sp|Q9MB14|PPO2_IPOBA Polyphenol oxidase II, chloroplast precursor (PPO-II) (Catechol
oxidase II)
Length = 588
Score = 30.8 bits (68), Expect = 4.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 333 FYDYGVDLIFGAHEHSYERMWPVYNLKVCNGTEAPYTD 446
FY G D++F H + +RMW ++ G +TD
Sbjct: 353 FYSAGRDILFYCHHSNVDRMWTIWQQLGGKGRRRDFTD 390
>sp|Q62559|IFT52_MOUSE Intraflagellar transport 52 homolog (Protein NGD5)
Length = 426
Score = 30.4 bits (67), Expect = 5.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 507 FYANKPDWSAFHSSDYGYTRMNIMNSSHMYLEQVSD 614
F N+P + +HS + G+ ++ ++ S HM+ +Q D
Sbjct: 191 FPLNRPILAFYHSKNQGFGKLAVLGSCHMFSDQYLD 226
>sp|P43309|PPO_MALDO Polyphenol oxidase, chloroplast precursor (PPO) (Catechol oxidase)
Length = 593
Score = 30.4 bits (67), Expect = 5.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 333 FYDYGVDLIFGAHEHSYERMWPVYNLKVCNGTEAPYTD 446
FY G D IF AH + +RMW ++ K G TD
Sbjct: 348 FYSAGRDPIFFAHHSNVDRMWSIW--KTLGGKRTDLTD 383
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,073,552
Number of Sequences: 369166
Number of extensions: 1991950
Number of successful extensions: 5135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5124
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)