Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_E08
(736 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42932|TCPQ_MOUSE T-complex protein 1, theta subunit (TC... 199 6e-51
sp|P50990|TCPQ_HUMAN T-complex protein 1, theta subunit (TC... 196 7e-50
sp|P47828|TCPQ_CANAL T-complex protein 1, theta subunit (TC... 149 8e-36
sp|P78921|TCPQ_SCHPO Probable T-complex protein 1, theta su... 140 5e-33
sp|P47079|TCPQ_YEAST T-complex protein 1, theta subunit (TC... 137 2e-32
sp|Q58405|THS_METJA Thermosome subunit (Chaperonin subunit) 113 5e-25
sp|O26885|THSB_METTH Thermosome beta subunit (Thermosome su... 109 7e-24
sp|Q9HN70|THSA_HALSA Thermosome alpha subunit (Thermosome s... 107 3e-23
sp|Q9YDK6|THSA_AERPE Thermosome alpha subunit (Thermosome s... 107 4e-23
sp|O93624|THS_METTL Thermosome subunit (Chaperonin subunit) 105 1e-22
>sp|P42932|TCPQ_MOUSE T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta)
Length = 548
Score = 199 bits (506), Expect = 6e-51
Identities = 100/198 (50%), Positives = 139/198 (70%)
Frame = +2
Query: 8 GATPIPKLSTPTQEELGYIASVRTEEIGKSTVVLFDQDVKEGAISSIVVRGSMYDMMDEV 187
GAT +PKL+ P QEE+G+ SV E+G + VV+F + ++GAIS+IV+RGS ++MD++
Sbjct: 329 GATALPKLTPPVQEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDI 388
Query: 188 ERAIDDGVNTFKCLTKEPRYLAGAGATEIELANRLSDFANTQTGLVQYAIKQFVLAFESI 367
ERA+DDGVNTFK LT++ R + G GATEIELA +++ + T GL QYAIK+F AFE+I
Sbjct: 389 ERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAI 448
Query: 368 VKVLCDNAGENATERIAELKAHHREGKTTFGIISTSEGRKVDDAVEHQILDTYTAKYWGI 547
+ L +N+G A E I++L + H+EG G+ +E V D +E ILDTY KYW I
Sbjct: 449 PRALAENSGVKANEVISKLYSVHQEGNKNVGLDIEAEVPAVKDMLEASILDTYLGKYWAI 508
Query: 548 RFAADTAVTILRVDNIIM 601
+ A + AVT+LRVD IIM
Sbjct: 509 KLATNAAVTVLRVDQIIM 526
>sp|P50990|TCPQ_HUMAN T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta)
sp|Q5RAP1|TCPQ_PONPY T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta)
Length = 548
Score = 196 bits (497), Expect = 7e-50
Identities = 99/198 (50%), Positives = 138/198 (69%)
Frame = +2
Query: 8 GATPIPKLSTPTQEELGYIASVRTEEIGKSTVVLFDQDVKEGAISSIVVRGSMYDMMDEV 187
GAT +P+L+ P EE+G+ SV E+G + VV+F + ++GAIS+IV+RGS ++MD++
Sbjct: 329 GATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDI 388
Query: 188 ERAIDDGVNTFKCLTKEPRYLAGAGATEIELANRLSDFANTQTGLVQYAIKQFVLAFESI 367
ERA+DDGVNTFK LT++ R + G GATEIELA +++ + T GL QYAIK+F AFE+I
Sbjct: 389 ERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAI 448
Query: 368 VKVLCDNAGENATERIAELKAHHREGKTTFGIISTSEGRKVDDAVEHQILDTYTAKYWGI 547
+ L +N+G A E I++L A H+EG G+ +E V D +E ILDTY KYW I
Sbjct: 449 PRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAI 508
Query: 548 RFAADTAVTILRVDNIIM 601
+ A + AVT+LRVD IIM
Sbjct: 509 KLATNAAVTVLRVDQIIM 526
>sp|P47828|TCPQ_CANAL T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta)
Length = 540
Score = 149 bits (376), Expect = 8e-36
Identities = 87/200 (43%), Positives = 118/200 (59%)
Frame = +2
Query: 2 VTGATPIPKLSTPTQEELGYIASVRTEEIGKSTVVLFDQDVKEGAISSIVVRGSMYDMMD 181
V GATP+P+L PT +E+G I + T+EIG V +F QD ++IVVRG+ + +D
Sbjct: 324 VCGATPLPRLGAPTPDEMGEIDIIETKEIGGDRVTIFRQDESSSRTATIVVRGATQNNLD 383
Query: 182 EVERAIDDGVNTFKCLTKEPRYLAGAGATEIELANRLSDFANTQTGLVQYAIKQFVLAFE 361
++ERAIDDGVN+ K L K+ R L GAGA EIEL R++ + +T GL+Q AIK F AFE
Sbjct: 384 DIERAIDDGVNSIKGLIKDNRLLPGAGAVEIELMKRITAYQST-PGLLQLAIKSFAKAFE 442
Query: 362 SIVKVLCDNAGENATERIAELKAHHREGKTTFGIISTSEGRKVDDAVEHQILDTYTAKYW 541
I +VL + +G +++E +++L A H E I G D AV LD K
Sbjct: 443 VIPRVLAETSGHDSSEILSKLHAAHAEDTGLRAGIDIDSGEVADTAV----LDILATKKS 498
Query: 542 GIRFAADTAVTILRVDNIIM 601
I A D TIL +D IIM
Sbjct: 499 AIDLAVDATNTILSIDQIIM 518
>sp|P78921|TCPQ_SCHPO Probable T-complex protein 1, theta subunit (TCP-1-theta)
(CCT-theta)
Length = 546
Score = 140 bits (352), Expect = 5e-33
Identities = 79/201 (39%), Positives = 117/201 (58%), Gaps = 1/201 (0%)
Frame = +2
Query: 2 VTGATPIPKLSTPTQEELGYIASVRTEEIGKSTVVLFDQDVKEGAISSIVVRGSMYDMMD 181
V GATP+ ++ P EE+G + V T EIG V +F Q ++IV+RG+ +D
Sbjct: 327 VVGATPLARMGVPMPEEMGSVDVVETIEIGGDRVTVFRQVEDITRTATIVLRGATKTYLD 386
Query: 182 EVERAIDDGVNTFKCLTKEPRYLAGAGATEIELANRLSDFANTQTGLVQYAIKQFVLAFE 361
++ERAIDDGVN K L K+ R + GAGA++++L RL G+ Q+AIKQ+ AFE
Sbjct: 387 DLERAIDDGVNIVKALVKDNRLIFGAGASDMQLCIRLISVGEKTPGIYQHAIKQYGEAFE 446
Query: 362 SIVKVLCDNAGENATERIAEL-KAHHREGKTTFGIISTSEGRKVDDAVEHQILDTYTAKY 538
+ + + +NAG + T+ I++L AHH+E + G+ E DA E I D AK
Sbjct: 447 VVPRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECENDGTLDAKEAGIFDVLLAKK 506
Query: 539 WGIRFAADTAVTILRVDNIIM 601
IR A +T +T+L VD ++M
Sbjct: 507 SAIRLATETVLTVLNVDQVVM 527
>sp|P47079|TCPQ_YEAST T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta)
Length = 568
Score = 137 bits (346), Expect = 2e-32
Identities = 86/214 (40%), Positives = 118/214 (55%), Gaps = 14/214 (6%)
Frame = +2
Query: 2 VTGATPIPKLSTPTQEELGYIASVRTEEIGKSTVVLFDQDVKE-GAISSIVVRGSMYDMM 178
V GATP+P+L PT EELG + +V+T EIG V +F Q+ E S+I++RG+ + +
Sbjct: 335 VCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNL 394
Query: 179 DEVERAIDDGVNTFKCLTKEP--RYLAGAGATEIELANRLSDFANTQTGLVQYAIKQFVL 352
D++ERAIDDGV K L K + L GAGATEIEL +R++ + GL+Q AIKQF +
Sbjct: 395 DDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAV 454
Query: 353 AFESIVKVLCDNAGENATERIAELKAHHREGKTTFGIISTSEGRK-----------VDDA 499
AFE + + L + AG + E + L A H T G + T K V D
Sbjct: 455 AFEVVPRTLAETAGLDVNEVLPNLYAAH--NVTEPGAVKTDHLYKGVDIDGESDEGVKDI 512
Query: 500 VEHQILDTYTAKYWGIRFAADTAVTILRVDNIIM 601
E I D K + I A + A T+L +D IIM
Sbjct: 513 REENIYDMLATKKFAINVATEAATTVLSIDQIIM 546
>sp|Q58405|THS_METJA Thermosome subunit (Chaperonin subunit)
Length = 542
Score = 113 bits (283), Expect = 5e-25
Identities = 69/199 (34%), Positives = 111/199 (55%), Gaps = 1/199 (0%)
Frame = +2
Query: 5 TGATPIPKLSTPTQEELGYIASVRTEEIGKSTVVLFDQDVKEGAISSIVVRGSMYDMMDE 184
TGA + K+ T E+LG V ++ ++ +Q A++ I+ RGS +++E
Sbjct: 325 TGARIVTKIDDLTPEDLGEAGLVEERKVAGDAMIFVEQCKHPKAVT-ILARGSTEHVVEE 383
Query: 185 VERAIDDGVNTFKCLTKEPRYLAGAGATEIELANRLSDFANTQTGLVQYAIKQFVLAFES 364
V RAIDD + KC +E + +AG GATEIELA RL FA + G Q A+K F A E
Sbjct: 384 VARAIDDAIGVVKCALEEGKIVAGGGATEIELAKRLRKFAESVAGREQLAVKAFADALEV 443
Query: 365 IVKVLCDNAGENATERIAELK-AHHREGKTTFGIISTSEGRKVDDAVEHQILDTYTAKYW 541
I + L +N+G + + + +L+ AH +EG +G + EG +V D +E +++ K
Sbjct: 444 IPRTLAENSGLDPIDMLVKLRAAHEKEGGEVYG-LDVFEG-EVVDMLEKGVVEPLKVKTQ 501
Query: 542 GIRFAADTAVTILRVDNII 598
I A + +V +LR+D++I
Sbjct: 502 AIDSATEASVMLLRIDDVI 520
>sp|O26885|THSB_METTH Thermosome beta subunit (Thermosome subunit 2) (Chaperonin beta
subunit)
Length = 538
Score = 109 bits (273), Expect = 7e-24
Identities = 66/198 (33%), Positives = 113/198 (57%)
Frame = +2
Query: 5 TGATPIPKLSTPTQEELGYIASVRTEEIGKSTVVLFDQDVKEGAISSIVVRGSMYDMMDE 184
TGA + + + E+LG V ++I ++ F ++ KE +I+VRGS ++ E
Sbjct: 321 TGANIVTNIEDLSPEDLGEAGVVSEKKISGEEMI-FVEECKEPKAVTILVRGSTEHVVSE 379
Query: 185 VERAIDDGVNTFKCLTKEPRYLAGAGATEIELANRLSDFANTQTGLVQYAIKQFVLAFES 364
VERAI+D + ++ + +AG GA EIE+A RL D+A++ +G Q A+ F A E
Sbjct: 380 VERAIEDAIGVVAATVEDGKVVAGGGAPEIEIAKRLKDYADSISGREQLAVSAFAEALEI 439
Query: 365 IVKVLCDNAGENATERIAELKAHHREGKTTFGIISTSEGRKVDDAVEHQILDTYTAKYWG 544
+ K L +NAG ++ + + +L+A H E +T+ I +G K+ D E +++ + K
Sbjct: 440 VPKTLAENAGLDSIDVLVDLRAAHEE--STYMGIDVFDG-KIVDMKEAGVIEPHRVKKQA 496
Query: 545 IRFAADTAVTILRVDNII 598
I+ AA+ A ILR+D++I
Sbjct: 497 IQSAAEAAEMILRIDDVI 514
>sp|Q9HN70|THSA_HALSA Thermosome alpha subunit (Thermosome subunit 1) (Chaperonin alpha
subunit)
Length = 562
Score = 107 bits (267), Expect = 3e-23
Identities = 64/198 (32%), Positives = 107/198 (54%)
Frame = +2
Query: 5 TGATPIPKLSTPTQEELGYIASVRTEEIGKSTVVLFDQDVKEGAISSIVVRGSMYDMMDE 184
TGATP+ ++ +LG SV ++IG + F +DV+E ++++RG ++DE
Sbjct: 325 TGATPVSNVNDIEAADLGAAGSVAQKDIGGDERI-FVEDVEEAKSVTLILRGGTEHVVDE 383
Query: 185 VERAIDDGVNTFKCLTKEPRYLAGAGATEIELANRLSDFANTQTGLVQYAIKQFVLAFES 364
VERAI+D + + ++ + + G GA E ELA +L DFA++ G Q A++ F A E
Sbjct: 384 VERAIEDSLGVVRVTLEDGQVMPGGGAPETELAMQLRDFADSVGGREQLAVEAFADALEV 443
Query: 365 IVKVLCDNAGENATERIAELKAHHREGKTTFGIISTSEGRKVDDAVEHQILDTYTAKYWG 544
I + L +NAG + + + +L++ H G T G+ + V D I++ K
Sbjct: 444 IPRTLAENAGHDPIDSLVDLRSQHDGGDTEAGL--DAYNGDVIDMESEGIVEPLRVKTQA 501
Query: 545 IRFAADTAVTILRVDNII 598
I A + A ILR+D++I
Sbjct: 502 IESATEAATMILRIDDVI 519
>sp|Q9YDK6|THSA_AERPE Thermosome alpha subunit (Thermosome subunit 1) (Chaperonin alpha
subunit)
Length = 554
Score = 107 bits (266), Expect = 4e-23
Identities = 63/198 (31%), Positives = 112/198 (56%)
Frame = +2
Query: 5 TGATPIPKLSTPTQEELGYIASVRTEEIGKSTVVLFDQDVKEGAISSIVVRGSMYDMMDE 184
TGA + L E LGY V ++G+ +V F + K +I++RG+ ++DE
Sbjct: 330 TGAKIVTSLRDLKPEYLGYAELVEERKVGEDKMV-FIEGAKNPKSVTILLRGANDMLLDE 388
Query: 185 VERAIDDGVNTFKCLTKEPRYLAGAGATEIELANRLSDFANTQTGLVQYAIKQFVLAFES 364
ER I D ++ + + +EP+ + G GA E+ELA +L +FA T G Q AI+ + A E+
Sbjct: 389 AERNIKDALHGLRNILREPKIVGGGGAVEVELALKLKEFARTVGGKQQLAIEAYAEALET 448
Query: 365 IVKVLCDNAGENATERIAELKAHHREGKTTFGIISTSEGRKVDDAVEHQILDTYTAKYWG 544
I VL ++AG +A E + +L++ H +G F ++ EG+ +D + + + K
Sbjct: 449 IPTVLAESAGMDALEALLKLRSLHSQG-YKFAGVNVLEGKIEEDMTKINVYEPVLVKKQV 507
Query: 545 IRFAADTAVTILRVDNII 598
I+ A++ A++IL++D++I
Sbjct: 508 IKSASEAAISILKIDDVI 525
>sp|O93624|THS_METTL Thermosome subunit (Chaperonin subunit)
Length = 544
Score = 105 bits (262), Expect = 1e-22
Identities = 58/198 (29%), Positives = 107/198 (54%)
Frame = +2
Query: 5 TGATPIPKLSTPTQEELGYIASVRTEEIGKSTVVLFDQDVKEGAISSIVVRGSMYDMMDE 184
TGA + + E+LG V +I ++ F ++ K ++++RG+ +++E
Sbjct: 323 TGANVVTNIKDLKAEDLGEAGIVEERKIAGDAMI-FVEECKHPKAVTMLIRGTTEHVIEE 381
Query: 185 VERAIDDGVNTFKCLTKEPRYLAGAGATEIELANRLSDFANTQTGLVQYAIKQFVLAFES 364
V RA+DD + C ++ + +AG GA EIELA +L D+A +G Q A++ F A E
Sbjct: 382 VARAVDDAIGVVACTIEDGKIVAGGGAAEIELAMKLRDYAEGVSGREQLAVRAFADALEV 441
Query: 365 IVKVLCDNAGENATERIAELKAHHREGKTTFGIISTSEGRKVDDAVEHQILDTYTAKYWG 544
+ + L +NAG +A E + +L+A H EG + ++ G V++ E+ +++ K
Sbjct: 442 VPRTLAENAGLDAIEMLVKLRAKHAEGNNAYYGLNVFTG-DVENMTENGVVEPLRVKTQA 500
Query: 545 IRFAADTAVTILRVDNII 598
I+ A + +LR+D++I
Sbjct: 501 IQSATEATEMLLRIDDVI 518
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,428,010
Number of Sequences: 369166
Number of extensions: 1696247
Number of successful extensions: 5072
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5030
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)