Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_E03
(879 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19483|ATPA1_BOVIN ATP synthase alpha chain heart isofor... 454 e-127
sp|P15999|ATPA_RAT ATP synthase alpha chain, mitochondrial ... 453 e-127
sp|P19482|ATPA2_BOVIN ATP synthase alpha chain liver isofor... 453 e-127
sp|Q03265|ATPA_MOUSE ATP synthase alpha chain, mitochondria... 453 e-127
sp|P25705|ATPA_HUMAN ATP synthase alpha chain, mitochondria... 450 e-126
sp|P35381|ATPA_DROME ATP synthase alpha chain, mitochondria... 429 e-120
sp|P08428|ATPA_XENLA ATP synthase alpha chain, mitochondria... 420 e-117
sp|P24487|ATPA_SCHPO ATP synthase alpha chain, mitochondria... 390 e-108
sp|P07251|ATPA_YEAST ATP synthase alpha chain, mitochondria... 387 e-107
sp|P49375|ATPA_KLULA ATP synthase alpha chain, mitochondria... 386 e-107
>sp|P19483|ATPA1_BOVIN ATP synthase alpha chain heart isoform, mitochondrial precursor
Length = 553
Score = 454 bits (1167), Expect = e-127
Identities = 232/276 (84%), Positives = 250/276 (90%), Gaps = 2/276 (0%)
Frame = +1
Query: 58 ARQIHLSNPL--NAEIPEVTSILESAIMGQSSQVSLEETGRVLSIGDGIARVYGLKNIQA 231
AR +H SN EV+SILE I+G + V LEETGRVLSIGDGIARV+GL+N+QA
Sbjct: 33 ARNLHASNSRLQKTGTAEVSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQA 92
Query: 232 EEMVEFSSGLKGMALNLERDNVGVVVFGNDKLIKEGDVVKRTGAIVDVPIGDELLGRVVD 411
EEMVEFSSGLKGM+LNLE DNVGVVVFGNDKLIKEGD+VKRTGAIVDVP+G+ELLGRVVD
Sbjct: 93 EEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVD 152
Query: 412 ALGNPIDGKGPFTKGLRARVGLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIG 591
ALGN IDGKGP R RVGLKAPGIIPR SV+EPMQTG+KAVDSLVPIGRGQRELIIG
Sbjct: 153 ALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIG 212
Query: 592 DRQTGKTAIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYT 771
DRQTGKT+IAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRL++ADAMKYT
Sbjct: 213 DRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 272
Query: 772 IVVSATASDAAPLQYLSPYSGCAMGEYFRDNGKHAL 879
IVVSATASDAAPLQYL+PYSGC+MGEYFRDNGKHAL
Sbjct: 273 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHAL 308
>sp|P15999|ATPA_RAT ATP synthase alpha chain, mitochondrial precursor
Length = 543
Score = 453 bits (1166), Expect = e-127
Identities = 231/275 (84%), Positives = 250/275 (90%), Gaps = 2/275 (0%)
Frame = +1
Query: 61 RQIHLSNPL--NAEIPEVTSILESAIMGQSSQVSLEETGRVLSIGDGIARVYGLKNIQAE 234
R +H SN E++SILE I+G + V LEETGRVLSIGDGIARV+GL+N+QAE
Sbjct: 24 RNLHASNTRLQKTGTAEMSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAE 83
Query: 235 EMVEFSSGLKGMALNLERDNVGVVVFGNDKLIKEGDVVKRTGAIVDVPIGDELLGRVVDA 414
EMVEFSSGLKGM+LNLE DNVGVVVFGNDKLIKEGD+VKRTGAIVDVP+GDELLGRVVDA
Sbjct: 84 EMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDA 143
Query: 415 LGNPIDGKGPFTKGLRARVGLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIGD 594
LGN IDGKGP +R RVGLKAPGIIPR SV+EPMQTG+KAVDSLVPIGRGQRELIIGD
Sbjct: 144 LGNAIDGKGPVGSKIRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGD 203
Query: 595 RQTGKTAIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTI 774
RQTGKT+IAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRL++ADAMKYTI
Sbjct: 204 RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 263
Query: 775 VVSATASDAAPLQYLSPYSGCAMGEYFRDNGKHAL 879
VVSATASDAAPLQYL+PYSGC+MGEYFRDNGKHAL
Sbjct: 264 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHAL 298
>sp|P19482|ATPA2_BOVIN ATP synthase alpha chain liver isoform, mitochondrial precursor
Length = 359
Score = 453 bits (1166), Expect = e-127
Identities = 231/275 (84%), Positives = 250/275 (90%), Gaps = 2/275 (0%)
Frame = +1
Query: 61 RQIHLSNPL--NAEIPEVTSILESAIMGQSSQVSLEETGRVLSIGDGIARVYGLKNIQAE 234
R +H SN E++SILE I+G + V LEETGRVLSIGDGIARV+GL+N+QAE
Sbjct: 34 RNLHASNTRLQKTGTAEMSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAE 93
Query: 235 EMVEFSSGLKGMALNLERDNVGVVVFGNDKLIKEGDVVKRTGAIVDVPIGDELLGRVVDA 414
EMVEFSSGLKGM+LNLE DNVGVVVFGNDKLIKEGD+VKRTGAIVDVP+GDELLGRVVDA
Sbjct: 94 EMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDA 153
Query: 415 LGNPIDGKGPFTKGLRARVGLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIGD 594
LGN IDGKGP +R RVGLKAPGIIPR SV+EPMQTG+KAVDSLVPIGRGQRELIIGD
Sbjct: 154 LGNAIDGKGPVGSKIRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGD 213
Query: 595 RQTGKTAIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTI 774
RQTGKT+IAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRL++ADAMKYTI
Sbjct: 214 RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 273
Query: 775 VVSATASDAAPLQYLSPYSGCAMGEYFRDNGKHAL 879
VVSATASDAAPLQYL+PYSGC+MGEYFRDNGKHAL
Sbjct: 274 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHAL 308
>sp|Q03265|ATPA_MOUSE ATP synthase alpha chain, mitochondrial precursor
Length = 553
Score = 453 bits (1165), Expect = e-127
Identities = 232/276 (84%), Positives = 250/276 (90%), Gaps = 2/276 (0%)
Frame = +1
Query: 58 ARQIHLSNPL--NAEIPEVTSILESAIMGQSSQVSLEETGRVLSIGDGIARVYGLKNIQA 231
AR +H SN E++SILE I+G + V LEETGRVLSIGDGIARV+GL+N+QA
Sbjct: 33 ARNLHASNTRLQKTGTAEMSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQA 92
Query: 232 EEMVEFSSGLKGMALNLERDNVGVVVFGNDKLIKEGDVVKRTGAIVDVPIGDELLGRVVD 411
EEMVEFSSGLKGM+LNLE DNVGVVVFGNDKLIKEGDVVKRTGAIVDVP+G+ELLGRVVD
Sbjct: 93 EEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDVVKRTGAIVDVPVGEELLGRVVD 152
Query: 412 ALGNPIDGKGPFTKGLRARVGLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIG 591
ALGN IDGKGP R RVGLKAPGIIPR SV+EPMQTG+KAVDSLVPIGRGQRELIIG
Sbjct: 153 ALGNAIDGKGPIGSKTRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIG 212
Query: 592 DRQTGKTAIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYT 771
DRQTGKT+IAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRL++ADAMKYT
Sbjct: 213 DRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 272
Query: 772 IVVSATASDAAPLQYLSPYSGCAMGEYFRDNGKHAL 879
IVVSATASDAAPLQYL+PYSGC+MGEYFRDNGKHAL
Sbjct: 273 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHAL 308
>sp|P25705|ATPA_HUMAN ATP synthase alpha chain, mitochondrial precursor
Length = 553
Score = 450 bits (1158), Expect = e-126
Identities = 230/276 (83%), Positives = 249/276 (90%), Gaps = 2/276 (0%)
Frame = +1
Query: 58 ARQIHLSNP--LNAEIPEVTSILESAIMGQSSQVSLEETGRVLSIGDGIARVYGLKNIQA 231
AR H SN E++SILE I+G + V LEETGRVLSIGDGIARV+GL+N+QA
Sbjct: 33 ARNFHASNTHLQKTGTAEMSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQA 92
Query: 232 EEMVEFSSGLKGMALNLERDNVGVVVFGNDKLIKEGDVVKRTGAIVDVPIGDELLGRVVD 411
EEMVEFSSGLKGM+LNLE DNVGVVVFGNDKLIKEGD+VKRTGAIVDVP+G+ELLGRVVD
Sbjct: 93 EEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVD 152
Query: 412 ALGNPIDGKGPFTKGLRARVGLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIG 591
ALGN IDGKGP R RVGLKAPGIIPR SV+EPMQTG+KAVDSLVPIGRGQRELIIG
Sbjct: 153 ALGNAIDGKGPIGSKTRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIG 212
Query: 592 DRQTGKTAIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYT 771
DRQTGKT+IAIDTIINQKRFNDG+DEKKKLYCIYVAIGQKRSTVAQLVKRL++ADAMKYT
Sbjct: 213 DRQTGKTSIAIDTIINQKRFNDGSDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 272
Query: 772 IVVSATASDAAPLQYLSPYSGCAMGEYFRDNGKHAL 879
IVVSATASDAAPLQYL+PYSGC+MGEYFRDNGKHAL
Sbjct: 273 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHAL 308
>sp|P35381|ATPA_DROME ATP synthase alpha chain, mitochondrial precursor (Protein
bellwether)
Length = 552
Score = 429 bits (1102), Expect = e-120
Identities = 216/274 (78%), Positives = 245/274 (89%)
Frame = +1
Query: 58 ARQIHLSNPLNAEIPEVTSILESAIMGQSSQVSLEETGRVLSIGDGIARVYGLKNIQAEE 237
AR++H+++ + E+++ILE I+G + + LEETGRVLSIGDGIARVYGL NIQA+E
Sbjct: 36 ARKLHVASTQRSA--EISNILEERILGVAPKADLEETGRVLSIGDGIARVYGLNNIQADE 93
Query: 238 MVEFSSGLKGMALNLERDNVGVVVFGNDKLIKEGDVVKRTGAIVDVPIGDELLGRVVDAL 417
MVEFSSGLKGMALNLE DNVGVVVFGNDKLIK+GD+VKRTGAIVDVP+GDELLGRVVDAL
Sbjct: 94 MVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKQGDIVKRTGAIVDVPVGDELLGRVVDAL 153
Query: 418 GNPIDGKGPFTKGLRARVGLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIGDR 597
GN IDGKG R RVG+KAPGIIPR SV+EPMQTG+KAVDSLVPIGRGQRELIIGDR
Sbjct: 154 GNAIDGKGAINTKDRFRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDR 213
Query: 598 QTGKTAIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIV 777
QTGKTA+AIDTIINQKRFN+ DE KKLYCIYVAIGQKRSTVAQ+VKRL+++ AM Y+++
Sbjct: 214 QTGKTALAIDTIINQKRFNEAQDESKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYSVI 273
Query: 778 VSATASDAAPLQYLSPYSGCAMGEYFRDNGKHAL 879
VSATASDAAPLQYL+PYSGCAMGEYFRD GKHAL
Sbjct: 274 VSATASDAAPLQYLAPYSGCAMGEYFRDKGKHAL 307
>sp|P08428|ATPA_XENLA ATP synthase alpha chain, mitochondrial precursor
Length = 545
Score = 420 bits (1080), Expect = e-117
Identities = 219/276 (79%), Positives = 235/276 (85%), Gaps = 3/276 (1%)
Frame = +1
Query: 61 RQIHLSN---PLNAEIPEVTSILESAIMGQSSQVSLEETGRVLSIGDGIARVYGLKNIQA 231
R IH S P + EV+SILE I+G + LEETGRVLSIGDGIARVYGL+N+QA
Sbjct: 34 RNIHASGVWPPEKSGTAEVSSILEERILGADTTADLEETGRVLSIGDGIARVYGLRNVQA 93
Query: 232 EEMVEFSSGLKGMALNLERDNVGVVVFGNDKLIKEGDVVKRTGAIVDVPIGDELLGRVVD 411
EEMVEFSSGLKGM+LNLE DNVGVV NDKLIKEGD+VKRTGAIVDVP+GDELLGRVVD
Sbjct: 94 EEMVEFSSGLKGMSLNLEPDNVGVVGLANDKLIKEGDIVKRTGAIVDVPVGDELLGRVVD 153
Query: 412 ALGNPIDGKGPFTKGLRARVGLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIG 591
ALGN IDGKGP R RVGLKAPGIIPR SV+EPMQTG+KAVDSLVPIGRGQRELIIG
Sbjct: 154 ALGNTIDGKGPIGSKTRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIG 213
Query: 592 DRQTGKTAIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYT 771
DRQTGKT+IAIDTIINQKRFNDGTDEKKKLYCIYVAIGQ KRL++ADAMKYT
Sbjct: 214 DRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQ---------KRLTDADAMKYT 264
Query: 772 IVVSATASDAAPLQYLSPYSGCAMGEYFRDNGKHAL 879
IVVS TASDAAPLQYL+PYSGC+MGEYFRDNG HAL
Sbjct: 265 IVVSRTASDAAPLQYLAPYSGCSMGEYFRDNGTHAL 300
>sp|P24487|ATPA_SCHPO ATP synthase alpha chain, mitochondrial precursor
Length = 536
Score = 390 bits (1001), Expect = e-108
Identities = 190/259 (73%), Positives = 227/259 (87%)
Frame = +1
Query: 103 EVTSILESAIMGQSSQVSLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNL 282
EV SILE I G +Q + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNL
Sbjct: 35 EVPSILEERIRGAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNL 94
Query: 283 ERDNVGVVVFGNDKLIKEGDVVKRTGAIVDVPIGDELLGRVVDALGNPIDGKGPFTKGLR 462
E D VG V+FGND+L++EG+VVKRT IVDVP+G+ LLGRVVDALGNPIDGKGP R
Sbjct: 95 EADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTER 154
Query: 463 ARVGLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQ 642
RV LKAPGI+PRTSV EPMQTG+KA+DS+VPIGRGQRELIIGDRQTGKTAIA+DTI+N
Sbjct: 155 RRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIALDTILNH 214
Query: 643 KRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLS 822
KR+N+ +DE KKLYC+YVA+GQKRSTVAQLV++L D++KY+I+V+ATAS++APLQYL+
Sbjct: 215 KRWNNSSDESKKLYCVYVAVGQKRSTVAQLVQKLEENDSLKYSIIVAATASESAPLQYLA 274
Query: 823 PYSGCAMGEYFRDNGKHAL 879
P+SGCAMGE+FRDNGKH L
Sbjct: 275 PFSGCAMGEWFRDNGKHGL 293
>sp|P07251|ATPA_YEAST ATP synthase alpha chain, mitochondrial precursor
Length = 545
Score = 387 bits (995), Expect = e-107
Identities = 189/263 (71%), Positives = 231/263 (87%)
Frame = +1
Query: 91 AEIPEVTSILESAIMGQSSQVSLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGM 270
A+ EV+SILE I G S + +L ETGRVL++GDGIARV+GL NIQAEE+VEFSSG+KGM
Sbjct: 40 AQPTEVSSILEERIKGVSDEANLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGM 99
Query: 271 ALNLERDNVGVVVFGNDKLIKEGDVVKRTGAIVDVPIGDELLGRVVDALGNPIDGKGPFT 450
ALNLE VG+V+FG+D+L+KEG++VKRTG IVDVP+G LLGRVVDALGNPIDGKGP
Sbjct: 100 ALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPID 159
Query: 451 KGLRARVGLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDT 630
R+R +KAPGI+PR SV EP+QTG+KAVD+LVPIGRGQRELIIGDRQTGKTA+A+DT
Sbjct: 160 AAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDT 219
Query: 631 IINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPL 810
I+NQKR+N+G+DE KKLYC+YVA+GQKRSTVAQLV+ L DAMKY+I+V+ATAS+AAPL
Sbjct: 220 ILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPL 279
Query: 811 QYLSPYSGCAMGEYFRDNGKHAL 879
QYL+P++ ++GE+FRDNGKHAL
Sbjct: 280 QYLAPFTAASIGEWFRDNGKHAL 302
>sp|P49375|ATPA_KLULA ATP synthase alpha chain, mitochondrial precursor
Length = 548
Score = 386 bits (991), Expect = e-107
Identities = 187/263 (71%), Positives = 231/263 (87%)
Frame = +1
Query: 91 AEIPEVTSILESAIMGQSSQVSLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGM 270
A+ EV+SILE I G S + +L ETGRVL++GDGIARV+GL N+QAEE+VEFSSG+KGM
Sbjct: 43 AQPTEVSSILEERIRGVSEESNLNETGRVLAVGDGIARVFGLNNVQAEELVEFSSGVKGM 102
Query: 271 ALNLERDNVGVVVFGNDKLIKEGDVVKRTGAIVDVPIGDELLGRVVDALGNPIDGKGPFT 450
ALNLE VG+V+FG+D+L+KEG+VVKRTG IVDV +G ELLGRVVDALGNPIDGKGP
Sbjct: 103 ALNLEPGQVGIVLFGSDRLVKEGEVVKRTGKIVDVGVGPELLGRVVDALGNPIDGKGPIN 162
Query: 451 KGLRARVGLKAPGIIPRTSVKEPMQTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDT 630
R+R +KAPGI+PR SV EP+QTG+K+VD+LVPIGRGQRELIIGDRQTGKTA+A+DT
Sbjct: 163 ASGRSRAQVKAPGILPRRSVHEPVQTGLKSVDALVPIGRGQRELIIGDRQTGKTAVALDT 222
Query: 631 IINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPL 810
I+NQKR+N+GTDE KKLYC+YVA+GQKRSTVAQLV+ L DA+KY+I+V+ATAS+AAPL
Sbjct: 223 ILNQKRWNNGTDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDALKYSIIVAATASEAAPL 282
Query: 811 QYLSPYSGCAMGEYFRDNGKHAL 879
QY++P++ A+GE+FRDNG+HAL
Sbjct: 283 QYIAPFTAAAIGEWFRDNGRHAL 305
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.316 0.135 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,119,458
Number of Sequences: 369166
Number of extensions: 1957731
Number of successful extensions: 6910
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6616
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)