Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_E02
(340 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P67966|CSRP1_CHICK Cysteine-rich protein 1 (CRP1) (CRP) ... 68 6e-12
sp|Q24400|MLP2_DROME Muscle LIM protein Mlp84B 68 8e-12
sp|P53777|MLP1_DROME Muscle LIM protein 1 64 1e-10
sp|P47875|CSRP1_RAT Cysteine and glycine-rich protein 1 (Cy... 63 2e-10
sp|P97315|CSRP1_MOUSE Cysteine and glycine-rich protein 1 (... 63 2e-10
sp|Q3MHY1|CSRP1_BOVIN Cysteine and glycine-rich protein 1 (... 63 2e-10
sp|P50463|CSRP3_RAT Cysteine and glycine-rich protein 3 (Cy... 62 3e-10
sp|P50462|CSRP3_MOUSE Cysteine and glycine-rich protein 3 (... 62 3e-10
sp|P21291|CSRP1_HUMAN Cysteine and glycine-rich protein 1 (... 62 3e-10
sp|P50461|CSRP3_HUMAN Cysteine and glycine-rich protein 3 (... 62 3e-10
>sp|P67966|CSRP1_CHICK Cysteine-rich protein 1 (CRP1) (CRP)
sp|P67967|CSRP1_COTJA Cysteine-rich protein 1 (CRP1) (CRP)
Length = 192
Score = 68.2 bits (165), Expect = 6e-12
Identities = 31/58 (53%), Positives = 40/58 (68%)
Frame = +2
Query: 5 GCPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
GCPRCG+ VY AEK IG G S+HK+CF C +C K L+ST L ++ ++YCK CY
Sbjct: 117 GCPRCGQAVYAAEKVIGA--GKSWHKSCFRCAKCGKSLESTTLA--DKDGEIYCKGCY 170
Score = 58.5 bits (140), Expect = 5e-09
Identities = 29/57 (50%), Positives = 38/57 (66%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
C C K VY AE+ + C +G SFHK+CF C CKK LDST + + +E +YCK+CY
Sbjct: 10 CGVCQKAVYFAEE-VQC-EGSSFHKSCFLCMVCKKNLDSTTVAVHGDE--IYCKSCY 62
>sp|Q24400|MLP2_DROME Muscle LIM protein Mlp84B
Length = 495
Score = 67.8 bits (164), Expect = 8e-12
Identities = 32/58 (55%), Positives = 38/58 (65%)
Frame = +2
Query: 5 GCPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
GCPRCG VY AE+ + G S+HK CF C CKK LDS ILC +K++YCK CY
Sbjct: 119 GCPRCGGYVYAAEQMLA--RGRSWHKECFKCGTCKKGLDS-ILCCEAPDKNIYCKGCY 173
Score = 65.9 bits (159), Expect = 3e-11
Identities = 30/58 (51%), Positives = 40/58 (68%)
Frame = +2
Query: 5 GCPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
GCPRCG VY AE+ + G +HK CF+CK+C K LDS I ++ ++DVYC+TCY
Sbjct: 221 GCPRCGGVVYAAEQKLS--KGREWHKKCFNCKDCHKTLDS-INASDGPDRDVYCRTCY 275
Score = 64.7 bits (156), Expect = 6e-11
Identities = 31/57 (54%), Positives = 38/57 (66%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
CPRCGK VY AE+ + G FHK CF C C K LDST CT + E+++YCKTC+
Sbjct: 12 CPRCGKSVYAAEERLA--GGYVFHKNCFKCGMCNKSLDST-NCT-EHERELYCKTCH 64
Score = 60.1 bits (144), Expect = 2e-09
Identities = 28/59 (47%), Positives = 37/59 (62%)
Frame = +2
Query: 2 GGCPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
GGCPRCG V+ AE+ I +HK CF C +C+K LDST L + + D+YC+ CY
Sbjct: 419 GGCPRCGFAVFAAEQMIS--KTRIWHKRCFYCSDCRKSLDSTNL-NDGPDGDIYCRACY 474
Score = 57.0 bits (136), Expect = 1e-08
Identities = 23/58 (39%), Positives = 37/58 (63%)
Frame = +2
Query: 5 GCPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
GCPRCG V+ AE+ + G +HK C++C +C + LDS + C + + D++C+ CY
Sbjct: 324 GCPRCGGAVFAAEQQLS--KGKVWHKKCYNCADCHRPLDSVLAC-DGPDGDIHCRACY 378
>sp|P53777|MLP1_DROME Muscle LIM protein 1
Length = 92
Score = 63.5 bits (153), Expect = 1e-10
Identities = 30/57 (52%), Positives = 37/57 (64%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
CP CGK VY AE+ + G FHKTCF C C K LDST CT + EK+++CK C+
Sbjct: 11 CPACGKSVYAAEERVA--GGYKFHKTCFKCSMCNKALDST-NCT-EHEKELFCKNCH 63
>sp|P47875|CSRP1_RAT Cysteine and glycine-rich protein 1 (Cysteine-rich protein 1)
(CRP1) (CRP)
Length = 193
Score = 62.8 bits (151), Expect = 2e-10
Identities = 29/57 (50%), Positives = 38/57 (66%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
CPRC + VY AEK IG G S+HK+CF C +C K L+ST L ++ ++YCK CY
Sbjct: 119 CPRCSQAVYAAEKVIGA--GKSWHKSCFRCAKCGKGLESTTLA--DKDGEIYCKGCY 171
Score = 59.3 bits (142), Expect = 3e-09
Identities = 30/57 (52%), Positives = 38/57 (66%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
C C K VY AE+ + C +G SFHK+CF C CKK LDST + + EE +YCK+CY
Sbjct: 10 CGVCQKTVYFAEE-VQC-EGNSFHKSCFLCMVCKKNLDSTTVAVHGEE--IYCKSCY 62
>sp|P97315|CSRP1_MOUSE Cysteine and glycine-rich protein 1 (Cysteine-rich protein 1)
(CRP1) (CRP)
Length = 193
Score = 62.8 bits (151), Expect = 2e-10
Identities = 29/57 (50%), Positives = 38/57 (66%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
CPRC + VY AEK IG G S+HK+CF C +C K L+ST L ++ ++YCK CY
Sbjct: 119 CPRCSQAVYAAEKVIGA--GKSWHKSCFRCAKCGKGLESTTLA--DKDGEIYCKGCY 171
Score = 59.3 bits (142), Expect = 3e-09
Identities = 30/57 (52%), Positives = 38/57 (66%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
C C K VY AE+ + C +G SFHK+CF C CKK LDST + + EE +YCK+CY
Sbjct: 10 CGVCQKTVYFAEE-VQC-EGNSFHKSCFLCMVCKKNLDSTTVAVHGEE--IYCKSCY 62
>sp|Q3MHY1|CSRP1_BOVIN Cysteine and glycine-rich protein 1 (Cysteine-rich protein 1)
(CRP1)
Length = 193
Score = 62.8 bits (151), Expect = 2e-10
Identities = 29/57 (50%), Positives = 38/57 (66%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
CPRC + VY AEK IG G S+HK+CF C +C K L+ST L ++ ++YCK CY
Sbjct: 119 CPRCSQAVYAAEKVIGA--GKSWHKSCFRCAKCGKGLESTTLA--DKDGEIYCKGCY 171
Score = 59.3 bits (142), Expect = 3e-09
Identities = 30/57 (52%), Positives = 38/57 (66%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
C C K VY AE+ + C +G SFHK+CF C CKK LDST + + EE +YCK+CY
Sbjct: 10 CGVCQKTVYFAEE-VQC-EGSSFHKSCFLCLVCKKNLDSTTVAVHGEE--IYCKSCY 62
>sp|P50463|CSRP3_RAT Cysteine and glycine-rich protein 3 (Cysteine-rich protein 3)
(CRP3) (LIM domain protein, cardiac) (Muscle LIM
protein)
Length = 194
Score = 62.4 bits (150), Expect = 3e-10
Identities = 32/59 (54%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKD--VYCKTCY 178
CPRCGK VY AEK +G G +HKTCF C C K L+S TN +KD +YCK CY
Sbjct: 120 CPRCGKSVYAAEKVMG--GGKPWHKTCFPCAICGKSLES----TNVTDKDGELYCKVCY 172
Score = 61.6 bits (148), Expect = 5e-10
Identities = 30/57 (52%), Positives = 37/57 (64%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
C C K VY AE+ I C +G SFHKTCF C C+K LDST + + E ++YCK CY
Sbjct: 10 CGACDKTVYHAEE-IQC-NGRSFHKTCFHCMACRKALDSTTVAAH--ESEIYCKVCY 62
>sp|P50462|CSRP3_MOUSE Cysteine and glycine-rich protein 3 (Cysteine-rich protein 3)
(CRP3) (LIM domain protein, cardiac) (Muscle LIM
protein)
Length = 194
Score = 62.4 bits (150), Expect = 3e-10
Identities = 32/59 (54%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKD--VYCKTCY 178
CPRCGK VY AEK +G G +HKTCF C C K L+S TN +KD +YCK CY
Sbjct: 120 CPRCGKSVYAAEKVMG--GGKPWHKTCFRCAICGKSLES----TNVTDKDGELYCKVCY 172
Score = 61.2 bits (147), Expect = 7e-10
Identities = 30/57 (52%), Positives = 37/57 (64%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
C C K VY AE+ I C +G SFHKTCF C C+K LDST + + E ++YCK CY
Sbjct: 10 CGACEKTVYHAEE-IQC-NGRSFHKTCFHCMACRKALDSTTVAAH--ESEIYCKVCY 62
>sp|P21291|CSRP1_HUMAN Cysteine and glycine-rich protein 1 (Cysteine-rich protein 1)
(CRP1) (CRP)
Length = 193
Score = 62.4 bits (150), Expect = 3e-10
Identities = 29/57 (50%), Positives = 37/57 (64%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
CPRC + VY AEK IG G S+HK CF C +C K L+ST L ++ ++YCK CY
Sbjct: 119 CPRCSQAVYAAEKVIGA--GKSWHKACFRCAKCGKGLESTTLA--DKDGEIYCKGCY 171
Score = 59.3 bits (142), Expect = 3e-09
Identities = 30/57 (52%), Positives = 38/57 (66%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
C C K VY AE+ + C +G SFHK+CF C CKK LDST + + EE +YCK+CY
Sbjct: 10 CGVCQKTVYFAEE-VQC-EGNSFHKSCFLCMVCKKNLDSTTVAVHGEE--IYCKSCY 62
>sp|P50461|CSRP3_HUMAN Cysteine and glycine-rich protein 3 (Cysteine-rich protein 3)
(CRP3) (LIM domain protein, cardiac) (Muscle LIM
protein)
Length = 194
Score = 62.4 bits (150), Expect = 3e-10
Identities = 32/59 (54%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKD--VYCKTCY 178
CPRCGK VY AEK +G G +HKTCF C C K L+S TN +KD +YCK CY
Sbjct: 120 CPRCGKSVYAAEKVMG--GGKPWHKTCFRCAICGKSLES----TNVTDKDGELYCKVCY 172
Score = 61.2 bits (147), Expect = 7e-10
Identities = 30/57 (52%), Positives = 37/57 (64%)
Frame = +2
Query: 8 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 178
C C K VY AE+ I C +G SFHKTCF C C+K LDST + + E ++YCK CY
Sbjct: 10 CGACEKTVYHAEE-IQC-NGRSFHKTCFHCMACRKALDSTTVAAH--ESEIYCKVCY 62
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,493,732
Number of Sequences: 369166
Number of extensions: 623111
Number of successful extensions: 2455
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2382
length of database: 68,354,980
effective HSP length: 80
effective length of database: 53,576,180
effective search space used: 1714437760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)