Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_D24
(575 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P45385|IGA3_HAEIN Immunoglobulin A1 protease precursor (... 35 0.13
sp|P42782|IGA1_HAEIN Immunoglobulin A1 protease precursor (... 35 0.13
sp|O94477|MYO52_SCHPO Myosin-52 (Myosin type V-2) 32 1.1
sp|Q10059|CDC12_SCHPO Cell division control protein 12 32 1.5
sp|P29074|PTN4_HUMAN Tyrosine-protein phosphatase, non-rece... 31 1.9
sp|Q97R30|HEMH_STRPN Ferrochelatase (Protoheme ferro-lyase)... 31 1.9
sp|Q8DQ04|HEMH_STRR6 Ferrochelatase (Protoheme ferro-lyase)... 31 2.5
sp|P14448|FIBA_CHICK Fibrinogen alpha chain precursor [Cont... 30 3.3
sp|P75255|Y523_MYCPN Hypothetical lipoprotein MG348 homolog... 30 4.3
sp|P34288|GAP_CAEEL GTPase-activating protein GAP (CeGAP) 30 5.7
>sp|P45385|IGA3_HAEIN Immunoglobulin A1 protease precursor (IGA1 protease)
Length = 1545
Score = 35.0 bits (79), Expect = 0.13
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Frame = +2
Query: 20 EILATNDISDVLTDELPAPDTTKNILAKFRDLQTGGNSNV---TQTISMEPSDELPAPNT 190
E +A N + T E D T+ A+ R++ SNV TQT + S
Sbjct: 1042 ETVAENSKQESKTVEKNEQDATETT-AQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1100
Query: 191 TKNLMERFSALGQEKSEGKCKPKIDIPRYTNGHSNGTSENQPVELPSNVVRANDPSHDDR 370
T E + +EK++ + + ++P+ T+ S +++ V+ + R NDP+ + +
Sbjct: 1101 TTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIK 1160
Query: 371 PEQGITKNLVNRFREMEGSSNN 436
Q T + + + +S+N
Sbjct: 1161 EPQSQTNTTADTEQPAKETSSN 1182
>sp|P42782|IGA1_HAEIN Immunoglobulin A1 protease precursor (IGA1 protease)
Length = 1541
Score = 35.0 bits (79), Expect = 0.13
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Frame = +2
Query: 20 EILATNDISDVLTDELPAPDTTKNILAKFRDLQTGGNSNV---TQTISMEPSDELPAPNT 190
E +A N + T E D T+ A+ R++ SNV TQT + S
Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETT-AQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096
Query: 191 TKNLMERFSALGQEKSEGKCKPKIDIPRYTNGHSNGTSENQPVELPSNVVRANDPSHDDR 370
T E + +EK++ + + ++P+ T+ S +++ V+ + R NDP+ + +
Sbjct: 1097 TTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIK 1156
Query: 371 PEQGITKNLVNRFREMEGSSNN 436
Q T + + + +S+N
Sbjct: 1157 EPQSQTNTTADTEQPAKETSSN 1178
>sp|O94477|MYO52_SCHPO Myosin-52 (Myosin type V-2)
Length = 1516
Score = 32.0 bits (71), Expect = 1.1
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +2
Query: 11 IENEILATNDISDVLTDELPAPDTTKNILAKFRDLQTGGNSNV----TQTISMEPSDELP 178
+ENEILATN I + + + + + K+ + GN+ + QT +E S +
Sbjct: 207 VENEILATNPIMEAFGNSKTSRNDNSSRFGKYIQILFDGNATIIGAKIQTYLLERSRLVF 266
Query: 179 APNTTKNLMERFSALGQEKSE 241
PN +N + L SE
Sbjct: 267 QPNQERNYHIFYQILAGSSSE 287
>sp|Q10059|CDC12_SCHPO Cell division control protein 12
Length = 1841
Score = 31.6 bits (70), Expect = 1.5
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Frame = +2
Query: 65 LPAPDTTKNILAKFRDLQTGGNSNVTQTISMEPSDELPAPNTTKNLMERFSALGQEKSEG 244
L P KNI+ D+Q + + S +P + P P+ + +R +++
Sbjct: 129 LKGPRLPKNIIKSSEDVQIAPVTPPVHSRSFDPLPKPPVPSVPVSKTKR-------RTKH 181
Query: 245 KCKPKIDIPRYTNGHS---NGTSENQPVELPSNVVRANDPS 358
K P +++P TN S T++ Q L S +RA P+
Sbjct: 182 KLAPVVEVPEITNEVSPKFTSTNDEQVYRLRS--IRAGSPN 220
>sp|P29074|PTN4_HUMAN Tyrosine-protein phosphatase, non-receptor type 4 (Protein-tyrosine
phosphatase MEG1) (PTPase-MEG1) (MEG)
Length = 926
Score = 31.2 bits (69), Expect = 1.9
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 47 DVLTDELPAPDTTKNILAKFRDLQTGGNSNVTQTISMEPSDELPAPNTTKNLMERFSALG 226
D+LT LP P T +LA F G+ + ++ +S SD PN ++ + + L
Sbjct: 133 DILTGRLPCPSNTAALLASFAVQSELGDYDQSENLSGYLSDYSFIPNQPQDFEKEIAKLH 192
Query: 227 QE 232
Q+
Sbjct: 193 QQ 194
>sp|Q97R30|HEMH_STRPN Ferrochelatase (Protoheme ferro-lyase) (Heme synthetase)
Length = 364
Score = 31.2 bits (69), Expect = 1.9
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +2
Query: 59 DELPAPDTTKNILAKFRDLQTGGNSNVTQTISMEPSDELPAPNTTKNLMERFSALGQE 232
DEL D TKNILA+ +DLQ V + I + + + P K ++E+ L +E
Sbjct: 309 DELVPSDETKNILAESQDLQM--PEFVKKLIEKKGRENVKMPYLIKKMLEKAGKLPKE 364
>sp|Q8DQ04|HEMH_STRR6 Ferrochelatase (Protoheme ferro-lyase) (Heme synthetase)
Length = 364
Score = 30.8 bits (68), Expect = 2.5
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +2
Query: 59 DELPAPDTTKNILAKFRDLQTGGNSNVTQTISMEPSDELPAPNTTKNLMERFSALGQE 232
DEL D TKNILA+ DLQ V + I + + + P K ++E+ L +E
Sbjct: 309 DELVPSDETKNILAESEDLQM--PEFVKKLIEKKGRENVKMPYLIKKMLEKAGKLPKE 364
>sp|P14448|FIBA_CHICK Fibrinogen alpha chain precursor [Contains: Fibrinopeptide A]
Length = 741
Score = 30.4 bits (67), Expect = 3.3
Identities = 31/133 (23%), Positives = 58/133 (43%)
Frame = +2
Query: 5 DNIENEILATNDISDVLTDELPAPDTTKNILAKFRDLQTGGNSNVTQTISMEPSDELPAP 184
DNI+ + + I D P TT K R L+ +SNV + ++PS E+ A
Sbjct: 198 DNIQKHLTQASSI-----DMHPDFQTTTLSTLKMRPLK---DSNVPEHFKLKPSPEMQAM 249
Query: 185 NTTKNLMERFSALGQEKSEGKCKPKIDIPRYTNGHSNGTSENQPVELPSNVVRANDPSHD 364
+ N+ + L + +++ + + D G +S + E PS V + + S
Sbjct: 250 SAFNNIKQMQVVLERPETDHVAEARGDSSPSHTGKLITSSHRR--ESPSLVDKTSSASSV 307
Query: 365 DRPEQGITKNLVN 403
R + +TK +++
Sbjct: 308 HRCTRTVTKKVIS 320
>sp|P75255|Y523_MYCPN Hypothetical lipoprotein MG348 homolog precursor (G12_orf305)
Length = 305
Score = 30.0 bits (66), Expect = 4.3
Identities = 29/109 (26%), Positives = 53/109 (48%)
Frame = -3
Query: 375 SGLSSWLGSFARTTLLGSSTG*FSDVPLE*PFVYRGMSIFGLHFPSDFSWPRAEKRSIKF 196
S +S SF+ LLGS S ++ P V+R +S + D+S E ++++
Sbjct: 6 SSISKKKVSFSTLLLLGSGIVLSSCSNIDKPNVFRTLSQQSVENKVDYSKLPKENKTVR- 64
Query: 195 FVVFGAGSSSDGSMLIVCVTLLLPPVCKSLNLAKIFFVVSGAGNSSVKT 49
+VFG +DG+ ++V T + ++I F ++G+ N +V T
Sbjct: 65 NLVFGTAEYNDGNYVLVVTT--------ETDSSQINF-LNGSNNQAVST 104
>sp|P34288|GAP_CAEEL GTPase-activating protein GAP (CeGAP)
Length = 1317
Score = 29.6 bits (65), Expect = 5.7
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 278 TNGHSNGTSENQPVELPSNVVRANDPSHDDRPE-QGITKNLVNRFREMEGSSNN 436
+NG T E+Q V S + D HDD E Q I++ + R R S N
Sbjct: 18 SNGGGTNTEEDQTVSATSKEDPSEDTGHDDPEETQEISETPIRRSRNRNASLRN 71
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,986,771
Number of Sequences: 369166
Number of extensions: 1433045
Number of successful extensions: 3849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3847
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4275400980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)