Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_D20
(807 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 99 1e-20
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 94 3e-19
sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock doma... 94 3e-19
sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain... 94 3e-19
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 94 6e-19
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 92 1e-18
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 92 1e-18
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 92 1e-18
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 92 2e-18
sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmi... 91 3e-18
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 99.0 bits (245), Expect = 1e-20
Identities = 44/74 (59%), Positives = 61/74 (82%)
Frame = +1
Query: 1 FNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANV 180
FNVK GYGF+ R+D +ED+F+HQ+AIVK+NP +SVG+GE++ FD+V+G KGNEAANV
Sbjct: 40 FNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANV 99
Query: 181 SAIDGKCVKGSEYA 222
+ +G V+GS+YA
Sbjct: 100 TGPEGSNVQGSKYA 113
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 94.4 bits (233), Expect = 3e-19
Identities = 43/74 (58%), Positives = 57/74 (77%)
Frame = +1
Query: 1 FNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANV 180
FNV+ GYGF+ RND +ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV
Sbjct: 90 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV 149
Query: 181 SAIDGKCVKGSEYA 222
+ DG V+GS YA
Sbjct: 150 TGPDGVPVEGSRYA 163
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
DNA binding protein NF-GMB)
Length = 372
Score = 94.4 bits (233), Expect = 3e-19
Identities = 43/74 (58%), Positives = 57/74 (77%)
Frame = +1
Query: 1 FNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANV 180
FNV+ GYGF+ RND +ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV
Sbjct: 98 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV 157
Query: 181 SAIDGKCVKGSEYA 222
+ DG V+GS YA
Sbjct: 158 TGPDGVPVEGSRYA 171
>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
protein YB2) (Y-box binding protein-A) (RYB-A)
Length = 361
Score = 94.4 bits (233), Expect = 3e-19
Identities = 43/74 (58%), Positives = 57/74 (77%)
Frame = +1
Query: 1 FNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANV 180
FNV+ GYGF+ RND +ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV
Sbjct: 90 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV 149
Query: 181 SAIDGKCVKGSEYA 222
+ DG V+GS YA
Sbjct: 150 TGPDGVPVEGSRYA 163
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 93.6 bits (231), Expect = 6e-19
Identities = 45/84 (53%), Positives = 61/84 (72%), Gaps = 6/84 (7%)
Frame = +1
Query: 1 FNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANV 180
FNV+ GYGF+ RND +ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV
Sbjct: 44 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV 103
Query: 181 SAIDGKCVKGSEYAL------RYP 234
+ +G V+GS+YA RYP
Sbjct: 104 TGPEGVPVQGSKYAADRNHYRRYP 127
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 92.4 bits (228), Expect = 1e-18
Identities = 45/84 (53%), Positives = 60/84 (71%), Gaps = 6/84 (7%)
Frame = +1
Query: 1 FNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANV 180
FNV+ GYGF+ RND +ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV
Sbjct: 64 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV 123
Query: 181 SAIDGKCVKGSEYAL------RYP 234
+ G V+GS+YA RYP
Sbjct: 124 TGPGGVPVQGSKYAADRNHYRRYP 147
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 92.4 bits (228), Expect = 1e-18
Identities = 45/84 (53%), Positives = 60/84 (71%), Gaps = 6/84 (7%)
Frame = +1
Query: 1 FNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANV 180
FNV+ GYGF+ RND +ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV
Sbjct: 66 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV 125
Query: 181 SAIDGKCVKGSEYAL------RYP 234
+ G V+GS+YA RYP
Sbjct: 126 TGPGGVPVQGSKYAADRNHYRRYP 149
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 92.4 bits (228), Expect = 1e-18
Identities = 45/84 (53%), Positives = 60/84 (71%), Gaps = 6/84 (7%)
Frame = +1
Query: 1 FNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANV 180
FNV+ GYGF+ RND +ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV
Sbjct: 63 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANV 122
Query: 181 SAIDGKCVKGSEYAL------RYP 234
+ G V+GS+YA RYP
Sbjct: 123 TGPGGVPVQGSKYAADRNHYRRYP 146
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 91.7 bits (226), Expect = 2e-18
Identities = 42/74 (56%), Positives = 57/74 (77%)
Frame = +1
Query: 1 FNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANV 180
FNV+ GYGF+ RND++ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV
Sbjct: 49 FNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANV 108
Query: 181 SAIDGKCVKGSEYA 222
+ G VKGS +A
Sbjct: 109 TGPGGVPVKGSRFA 122
>sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmic RNA-binding protein p56)
(mRNP4)
Length = 336
Score = 91.3 bits (225), Expect = 3e-18
Identities = 42/74 (56%), Positives = 56/74 (75%)
Frame = +1
Query: 1 FNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANV 180
FNV+ GYGF+ RND +ED+F+HQ+AI K+NP +SVG+GE + FD+V+G KG EAANV
Sbjct: 49 FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANV 108
Query: 181 SAIDGKCVKGSEYA 222
+ G VKGS +A
Sbjct: 109 TGPGGVPVKGSRFA 122
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,710,870
Number of Sequences: 369166
Number of extensions: 1320043
Number of successful extensions: 3602
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3570
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)