Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_D11
(395 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96BM0|FM14B_HUMAN Protein FAM14B (ISG12(c) protein) 39 0.005
sp|P40305|INI7_HUMAN Interferon-alpha-induced 11.5 kDa prot... 37 0.014
sp|Q9H2X8|FM14A_HUMAN Protein FAM14A precursor (ISG12(b) pr... 36 0.032
sp|P47068|BBC1_YEAST Myosin tail region-interacting protein... 36 0.032
sp|Q767L8|MDC1_PIG Mediator of DNA damage checkpoint protein 1 33 0.27
sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subuni... 32 0.46
sp|P09912|INI2_HUMAN Interferon-induced protein 6-16 precur... 32 0.46
sp|Q03209|VP61_NPVAC 61 kDa protein 32 0.46
sp|P0A685|PE23_MYCBO Hypothetical PE family protein PE23 >g... 31 0.78
sp|Q28808|INI2_PANTR Interferon-induced protein 6-16 precur... 31 0.78
>sp|Q96BM0|FM14B_HUMAN Protein FAM14B (ISG12(c) protein)
Length = 104
Score = 38.5 bits (88), Expect = 0.005
Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 11/60 (18%)
Frame = +2
Query: 95 ITAGSIAASMQ-------GPAVVAGSTFAILQSLGATGLGI---LLFGSTGSALGI-LGS 241
I A SIAA M G V AGS AILQS+GA GL + ++ G G+ALG LGS
Sbjct: 41 IAASSIAAKMMSTAAIANGGGVAAGSLVAILQSVGAAGLSVTSKVIGGFAGTALGAWLGS 100
>sp|P40305|INI7_HUMAN Interferon-alpha-induced 11.5 kDa protein (p27) (ISG12(a) protein)
Length = 122
Score = 37.0 bits (84), Expect = 0.014
Identities = 26/54 (48%), Positives = 30/54 (55%), Gaps = 10/54 (18%)
Frame = +2
Query: 95 ITAGSIAASMQGPAVVA-------GSTFAILQSLGATGLGIL---LFGSTGSAL 226
I + SIAA M A +A GS A LQSLGATGL L + GS GSA+
Sbjct: 61 IASSSIAAKMMSAAAIANGGGVASGSLVATLQSLGATGLSGLTKFILGSIGSAI 114
>sp|Q9H2X8|FM14A_HUMAN Protein FAM14A precursor (ISG12(b) protein) (TLH29 protein)
(pIFI27-like protein)
Length = 130
Score = 35.8 bits (81), Expect = 0.032
Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Frame = +2
Query: 95 ITAGSIAASMQGPAVVA-------GSTFAILQSLGATGLGI---LLFGSTGSALG 229
I A SIAA M A +A GS A LQS+GA GL +L S GS LG
Sbjct: 33 IAASSIAAKMMSAAAIANGGGVSAGSLVATLQSVGAAGLSTSSNILLASVGSVLG 87
>sp|P47068|BBC1_YEAST Myosin tail region-interacting protein MTI1 (BBC1 protein)
Length = 1157
Score = 35.8 bits (81), Expect = 0.032
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = -3
Query: 237 PKIPSAEPVDPNNKIPKPVAPSDCKIANVLPATTAGPCIEAAILPAVIPPKPNP 76
P +PSA PV P P APS + V P ++A P + A +P V P P P
Sbjct: 707 PSVPSAPPVPPAP--PALSAPSVPPVPPVPPVSSAPPALSAPSIPPVPPTPPAP 758
>sp|Q767L8|MDC1_PIG Mediator of DNA damage checkpoint protein 1
Length = 2042
Score = 32.7 bits (73), Expect = 0.27
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = -3
Query: 267 SHQPNCTAKEPKIPSAEPVDPNNKIPKPVAPSDCKIANVLPATTAGPCIEAAILPAVIPP 88
+H+ + EP IP+A + P+ +PVAP A A ++PA P
Sbjct: 1180 THRSSVKTPEPNIPTAPELQPSTPTDQPVAPEPLSRATRGRTPRASVKTSEPVVPAAPEP 1239
Query: 87 KPN 79
+P+
Sbjct: 1240 QPS 1242
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 267 SHQPNCTAKEPKIPSAEPVDPNNKIPKPVAP 175
+H+ + EP IP+A + P+ +PVAP
Sbjct: 1262 THRSSVKTPEPNIPTAPELRPSTPTDQPVAP 1292
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 (CCR4-associated factor 3)
Length = 753
Score = 32.0 bits (71), Expect = 0.46
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Frame = -3
Query: 273 LHSHQ-PNCTAKEPKIPSAEP--------VDPNNKIPKPVAPSDCKIANVLPATTAGPCI 121
+HS+Q P A P PS P NN +P P AP PA +
Sbjct: 308 VHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPAPSHNSGT 367
Query: 120 EAAILPAVIPPKPN 79
A AV PP P+
Sbjct: 368 PAPYAQAVAPPAPS 381
>sp|P09912|INI2_HUMAN Interferon-induced protein 6-16 precursor (Ifi-6-16)
Length = 130
Score = 32.0 bits (71), Expect = 0.46
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Frame = +2
Query: 95 ITAGSIAASMQ-------GPAVVAGSTFAILQSLGATGLGILLFGSTGSALG 229
I A S+AAS+ G V AG A LQSLGA G +++ G+ G+ +G
Sbjct: 66 IAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVVI-GNIGALMG 116
>sp|Q03209|VP61_NPVAC 61 kDa protein
Length = 543
Score = 32.0 bits (71), Expect = 0.46
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 240 EPKIPSAEPVDPNNKIPKPVAPSDCKIANVLPATTAGPCIEAAILPAVIPPKPNPNKGRI 61
EPK PSA P P P P P+ + ++ A P ++ LP+ + P P P+ +
Sbjct: 270 EPKPPSASPPPPPPPPPPPAPPAPPPMVDLSSAPPPPPLVD---LPSEMLPPPAPSLSNV 326
>sp|P0A685|PE23_MYCBO Hypothetical PE family protein PE23
sp|P0A684|PE23_MYCTU Hypothetical PE family protein PE23
Length = 382
Score = 31.2 bits (69), Expect = 0.78
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 23/77 (29%)
Frame = +2
Query: 95 ITAGSIA---ASMQGPAVV----AGSTFAILQSLGATGLGILLF---------------- 205
I AG A ++ PAVV AG TF + ATGLG+L
Sbjct: 204 IVAGQSALTGVALLQPAVVGVVQAGGTFLTAGTSAATGLGLLTLAGVEFSQGVGNLALAS 263
Query: 206 GSTGSALGILGSLAVQL 256
G+ + LG+LGS VQL
Sbjct: 264 GTAATGLGLLGSAGVQL 280
>sp|Q28808|INI2_PANTR Interferon-induced protein 6-16 precursor (Ifi-6-16)
Length = 130
Score = 31.2 bits (69), Expect = 0.78
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Frame = +2
Query: 95 ITAGSIAASMQ-------GPAVVAGSTFAILQSLGATGLGILLFGSTGSALG 229
I A S+AAS+ G V AG A LQSLGA G ++ G+ G+ +G
Sbjct: 66 IAANSVAASLMSWSAILNGGGVPAGGLVATLQSLGAGGSSVIT-GNIGALMG 116
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,339,802
Number of Sequences: 369166
Number of extensions: 1013489
Number of successful extensions: 3580
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3560
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)