Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_D10-1
(622 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation fac... 175 1e-43
sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation fac... 174 1e-43
sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation fac... 174 2e-43
sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor... 173 3e-43
sp|O75642|IF1AH_HUMAN Putative eukaryotic translation initi... 173 3e-43
sp|P47814|IF1A_RABIT Eukaryotic translation initiation fact... 165 8e-41
sp|P47815|IF1A_WHEAT Eukaryotic translation initiation fact... 152 5e-37
sp|P38912|IF1A_YEAST Eukaryotic translation initiation fact... 152 9e-37
sp|P55877|IF1A_SCHPO Eukaryotic translation initiation fact... 150 3e-36
sp|P56331|IF1A_ONOVI Eukaryotic translation initiation fact... 148 1e-35
>sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A
X isoform) (eIF-4C)
sp|P47813|IF1AX_HUMAN Eukaryotic translation initiation factor 1A, X-chromosomal (eIF-1A
X isoform) (eIF-4C)
sp|Q5RA42|IF1AY_PONPY Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
Y isoform) (eIF-4C)
Length = 144
Score = 175 bits (443), Expect = 1e-43
Identities = 85/115 (73%), Positives = 99/115 (86%), Gaps = 8/115 (6%)
Frame = -2
Query: 576 ENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDII 397
ENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVWIN DII
Sbjct: 18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDII 77
Query: 396 LVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 256
LVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++I+FD
Sbjct: 78 LVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFD 132
>sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
Y isoform) (eIF-4C)
Length = 144
Score = 174 bits (442), Expect = 1e-43
Identities = 85/115 (73%), Positives = 99/115 (86%), Gaps = 8/115 (6%)
Frame = -2
Query: 576 ENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDII 397
ENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVWIN DII
Sbjct: 18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDII 77
Query: 396 LVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 256
LVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++I+FD
Sbjct: 78 LVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFD 132
>sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation factor 1A, Y-chromosomal (eIF-1A
Y isoform) (eIF-4C)
Length = 144
Score = 174 bits (441), Expect = 2e-43
Identities = 84/115 (73%), Positives = 99/115 (86%), Gaps = 8/115 (6%)
Frame = -2
Query: 576 ENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDII 397
ENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVWIN DII
Sbjct: 18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDII 77
Query: 396 LVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 256
LVGLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++++FD
Sbjct: 78 LVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEVQFD 132
>sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor 1A (eIF-1A) (eIF-4C)
(Liver regeneration-related protein LRRG048)
sp|Q60872|IF1A_MOUSE Eukaryotic translation initiation factor 1A (eIF-1A) (eIF-4C)
Length = 144
Score = 173 bits (439), Expect = 3e-43
Identities = 83/115 (72%), Positives = 99/115 (86%), Gaps = 8/115 (6%)
Frame = -2
Query: 576 ENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDII 397
ENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG +RLCHIRGKLRKKVWIN DII
Sbjct: 18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDII 77
Query: 396 LVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 256
L+GLRDYQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++I+FD
Sbjct: 78 LIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFD 132
>sp|O75642|IF1AH_HUMAN Putative eukaryotic translation initiation factor 1A (eIF-1A)
(eIF-4C)
Length = 144
Score = 173 bits (439), Expect = 3e-43
Identities = 84/115 (73%), Positives = 99/115 (86%), Gaps = 8/115 (6%)
Frame = -2
Query: 576 ENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDII 397
ENE+ KREL++KEDGQEYA+V K+LGNGRLEA CFDG KRLCHIRGKLRKKVWIN DII
Sbjct: 18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDII 77
Query: 396 LVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 256
LVGLRDYQDNKADVI+KYNA+EAR+L+AYGE+P++ KI E D++I+FD
Sbjct: 78 LVGLRDYQDNKADVILKYNADEARSLQAYGELPEHAKINETDTFGPGDDDEIQFD 132
>sp|P47814|IF1A_RABIT Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 144
Score = 165 bits (418), Expect = 8e-41
Identities = 82/115 (71%), Positives = 97/115 (84%), Gaps = 8/115 (6%)
Frame = -2
Query: 576 ENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDII 397
ENE+ KREL++KEDGQEYA+V K+LGNGRLEA FDG KRL HIRGKLRKKVWIN DII
Sbjct: 18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKLRKKVWINTSDII 77
Query: 396 LVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE--------DNDIEFD 256
LVGLR+YQDNKADVI+KYNA+EAR+LKAYGE+P++ KI E D++I+FD
Sbjct: 78 LVGLREYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFD 132
>sp|P47815|IF1A_WHEAT Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 144
Score = 152 bits (385), Expect = 5e-37
Identities = 71/105 (67%), Positives = 87/105 (82%)
Frame = -2
Query: 576 ENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDII 397
E + KREL++KEDGQEYA+V ++LGNGR EA C DG KRLCHIRGK+ KKVWI GDI+
Sbjct: 18 EADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIV 77
Query: 396 LVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEEDNDIE 262
LVGLRDYQD+KADVI+KY +EAR LKAYGE+PD V++ E D++
Sbjct: 78 LVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGVDVD 122
>sp|P38912|IF1A_YEAST Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 153
Score = 152 bits (383), Expect = 9e-37
Identities = 72/122 (59%), Positives = 91/122 (74%), Gaps = 8/122 (6%)
Frame = -2
Query: 576 ENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDII 397
+++ KRELIYKE+GQEYA++ K+LGNGR+EA CFDG KR+ HIRGKLRKKVW+ QGDII
Sbjct: 18 DSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRKKVWMGQGDII 77
Query: 396 LVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKI--------EEDNDIEFDAAAAQ 241
LV LRD+QD++ DV+ KYN +EAR LK GE+P+N KI E D D+ F+ A
Sbjct: 78 LVSLRDFQDDQCDVVHKYNLDEARTLKNQGELPENAKINETDNFGFESDEDVNFEFGNAD 137
Query: 240 TD 235
D
Sbjct: 138 ED 139
>sp|P55877|IF1A_SCHPO Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 138
Score = 150 bits (378), Expect = 3e-36
Identities = 76/120 (63%), Positives = 88/120 (73%), Gaps = 10/120 (8%)
Frame = -2
Query: 576 ENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDII 397
ENE KREL Y E+GQ YA+V K+LGNGR+EA CFDG KRL HIRGKLRKKVWINQGDII
Sbjct: 18 ENENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDII 77
Query: 396 LVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKI----------EEDNDIEFDAAA 247
L+ LR++QD K DVI+KY A+EAR LK GE+P+ KI E+D D EFD A
Sbjct: 78 LLSLREFQDEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEGEDDLDFEFDVDA 137
>sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
Length = 145
Score = 148 bits (373), Expect = 1e-35
Identities = 70/100 (70%), Positives = 83/100 (83%)
Frame = -2
Query: 576 ENETMKRELIYKEDGQEYAKVEKILGNGRLEADCFDGKKRLCHIRGKLRKKVWINQGDII 397
E + KREL++KEDGQEYA+V ++LGNGR EA C DG KRLCHIRGK+ KKVWI GDII
Sbjct: 18 EADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDII 77
Query: 396 LVGLRDYQDNKADVIMKYNAEEARNLKAYGEIPDNVKIEE 277
LVGLRDYQD+KADVI+K +EAR LKAYGE+PDN ++ E
Sbjct: 78 LVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNE 117
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,391,559
Number of Sequences: 369166
Number of extensions: 936259
Number of successful extensions: 2473
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2473
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4877307000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)