Planarian EST Database


Dr_sW_021_D07

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_021_D07
         (825 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P63045|VAMP2_RAT  Vesicle-associated membrane protein 2 (...   129   1e-29
sp|P63026|VAMP2_BOVIN  Vesicle-associated membrane protein 2...   127   4e-29
sp|P23763|VAM1_HUMAN  Vesicle-associated membrane protein 1 ...   122   2e-27
sp|P47194|SYB_LOLPE  Synaptobrevin                                122   2e-27
sp|Q62442|VAMP1_MOUSE  Vesicle-associated membrane protein 1...   121   2e-27
sp|Q63666|VAMP1_RAT  Vesicle-associated membrane protein 1 (...   118   2e-26
sp|P47193|VAMP2_XENLA  Vesicle-associated membrane protein 2...   117   3e-26
sp|P13701|SYB_TORCA  Synaptobrevin (Synaptic vesicle-associa...   117   3e-26
sp|P35589|SYB_APLCA  Synaptobrevin                                115   1e-25
sp|Q15836|VAM3_HUMAN  Vesicle-associated membrane protein 3 ...   113   7e-25
>sp|P63045|VAMP2_RAT Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2)
 sp|P63044|VAMP2_MOUSE Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2)
          Length = 116

 Score =  129 bits (323), Expect = 1e-29
 Identities = 67/94 (71%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
 Frame = +1

Query: 19  MAANSQTVPGGPPVGETAG-LPPSSNVSNKRLQQTQAQVDEIVDIMKSNVDKVLERDQKL 195
           M+A + TVP   P GE     PP +  SN+RLQQTQAQVDE+VDIM+ NVDKVLERDQKL
Sbjct: 1   MSATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 60

Query: 196 SELDNRAEALQAGASQFEASAGKLKRKFWLKNLK 297
           SELD+RA+ALQAGASQFE SA KLKRK+W KNLK
Sbjct: 61  SELDDRADALQAGASQFETSAAKLKRKYWWKNLK 94
>sp|P63026|VAMP2_BOVIN Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2)
 sp|P63027|VAM2_HUMAN Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin 2)
          Length = 116

 Score =  127 bits (319), Expect = 4e-29
 Identities = 66/94 (70%), Positives = 75/94 (79%), Gaps = 1/94 (1%)
 Frame = +1

Query: 19  MAANSQTVPGGPPVGETAG-LPPSSNVSNKRLQQTQAQVDEIVDIMKSNVDKVLERDQKL 195
           M+A + T P   P GE     PP +  SN+RLQQTQAQVDE+VDIM+ NVDKVLERDQKL
Sbjct: 1   MSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL 60

Query: 196 SELDNRAEALQAGASQFEASAGKLKRKFWLKNLK 297
           SELD+RA+ALQAGASQFE SA KLKRK+W KNLK
Sbjct: 61  SELDDRADALQAGASQFETSAAKLKRKYWWKNLK 94
>sp|P23763|VAM1_HUMAN Vesicle-associated membrane protein 1 (VAMP-1) (Synaptobrevin 1)
          Length = 118

 Score =  122 bits (305), Expect = 2e-27
 Identities = 62/87 (71%), Positives = 72/87 (82%)
 Frame = +1

Query: 37  TVPGGPPVGETAGLPPSSNVSNKRLQQTQAQVDEIVDIMKSNVDKVLERDQKLSELDNRA 216
           T PGG P G     PP +  SN+RLQQTQAQV+E+VDI++ NVDKVLERDQKLSELD+RA
Sbjct: 15  TAPGGGPPG-----PPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRA 69

Query: 217 EALQAGASQFEASAGKLKRKFWLKNLK 297
           +ALQAGASQFE+SA KLKRK+W KN K
Sbjct: 70  DALQAGASQFESSAAKLKRKYWWKNCK 96
>sp|P47194|SYB_LOLPE Synaptobrevin
          Length = 125

 Score =  122 bits (305), Expect = 2e-27
 Identities = 66/98 (67%), Positives = 74/98 (75%), Gaps = 8/98 (8%)
 Frame = +1

Query: 28  NSQTVPGGPPVG--ETAGL------PPSSNVSNKRLQQTQAQVDEIVDIMKSNVDKVLER 183
           N Q  PGGPP G  +  G       PP     +KRLQQTQAQV+E+VDIM+ NVDKVLER
Sbjct: 6   NPQAGPGGPPSGPPQPGGPPGPPQGPPQPVQQSKRLQQTQAQVEEVVDIMRVNVDKVLER 65

Query: 184 DQKLSELDNRAEALQAGASQFEASAGKLKRKFWLKNLK 297
           D K+SELD+RA+ALQAGASQFEASAGKLKRKFW KN K
Sbjct: 66  DSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCK 103
>sp|Q62442|VAMP1_MOUSE Vesicle-associated membrane protein 1 (VAMP-1) (Synaptobrevin-1)
          Length = 118

 Score =  121 bits (304), Expect = 2e-27
 Identities = 62/85 (72%), Positives = 71/85 (83%)
 Frame = +1

Query: 43  PGGPPVGETAGLPPSSNVSNKRLQQTQAQVDEIVDIMKSNVDKVLERDQKLSELDNRAEA 222
           PGG P G     PP +  SN+RLQQTQAQV+E+VDIM+ NVDKVLERDQKLSELD+RA+A
Sbjct: 17  PGGGPPG-----PPPNMTSNRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADA 71

Query: 223 LQAGASQFEASAGKLKRKFWLKNLK 297
           LQAGASQFE+SA KLKRK+W KN K
Sbjct: 72  LQAGASQFESSAAKLKRKYWWKNCK 96
>sp|Q63666|VAMP1_RAT Vesicle-associated membrane protein 1 (VAMP-1) (Synaptobrevin-1)
          Length = 118

 Score =  118 bits (295), Expect = 2e-26
 Identities = 60/85 (70%), Positives = 70/85 (82%)
 Frame = +1

Query: 43  PGGPPVGETAGLPPSSNVSNKRLQQTQAQVDEIVDIMKSNVDKVLERDQKLSELDNRAEA 222
           PGG P G     PP +  SN+RLQQTQAQV+E+VDI++ NVDKVLERDQKLSELD+RA+A
Sbjct: 17  PGGGPPG-----PPPNTTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADA 71

Query: 223 LQAGASQFEASAGKLKRKFWLKNLK 297
           LQAGAS FE+SA KLKRK+W KN K
Sbjct: 72  LQAGASVFESSAAKLKRKYWWKNCK 96
>sp|P47193|VAMP2_XENLA Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2)
           (SYBII)
          Length = 114

 Score =  117 bits (294), Expect = 3e-26
 Identities = 61/86 (70%), Positives = 70/86 (81%), Gaps = 3/86 (3%)
 Frame = +1

Query: 49  GPPV---GETAGLPPSSNVSNKRLQQTQAQVDEIVDIMKSNVDKVLERDQKLSELDNRAE 219
           GPP    G+ A   P +  SN+RLQQTQAQVDE+VDIM+ NVDKVLERD KLSELD+RA+
Sbjct: 7   GPPAAAPGDGAPQGPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDTKLSELDDRAD 66

Query: 220 ALQAGASQFEASAGKLKRKFWLKNLK 297
           ALQAGASQFE SA KLKRK+W KN+K
Sbjct: 67  ALQAGASQFETSAAKLKRKYWWKNMK 92
>sp|P13701|SYB_TORCA Synaptobrevin (Synaptic vesicle-associated integral membrane
           protein) (VAMP-1)
          Length = 120

 Score =  117 bits (294), Expect = 3e-26
 Identities = 61/85 (71%), Positives = 72/85 (84%)
 Frame = +1

Query: 43  PGGPPVGETAGLPPSSNVSNKRLQQTQAQVDEIVDIMKSNVDKVLERDQKLSELDNRAEA 222
           P GPP     G PP++  SN+RLQQTQAQV+E+VDI++ NVDKVLERDQKLSELD+RA+A
Sbjct: 20  PTGPP-----GAPPNTT-SNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADA 73

Query: 223 LQAGASQFEASAGKLKRKFWLKNLK 297
           LQAGASQFE+SA KLKRK+W KN K
Sbjct: 74  LQAGASQFESSAAKLKRKYWWKNCK 98
>sp|P35589|SYB_APLCA Synaptobrevin
          Length = 180

 Score =  115 bits (289), Expect = 1e-25
 Identities = 61/85 (71%), Positives = 70/85 (82%)
 Frame = +1

Query: 43  PGGPPVGETAGLPPSSNVSNKRLQQTQAQVDEIVDIMKSNVDKVLERDQKLSELDNRAEA 222
           PGGP  G     PP     +KRLQQTQAQVDE+VDIM+ NV+KVL+RDQK+S+LD+RAEA
Sbjct: 5   PGGPQGGMQ---PpreQ--SKRLQQTQAQVDEVVDIMRVNVEKVLDRDQKISQLDDRAEA 59

Query: 223 LQAGASQFEASAGKLKRKFWLKNLK 297
           LQAGASQFEASAGKLKRK+W KN K
Sbjct: 60  LQAGASQFEASAGKLKRKYWWKNCK 84
>sp|Q15836|VAM3_HUMAN Vesicle-associated membrane protein 3 (VAMP-3) (Synaptobrevin 3)
           (Cellubrevin) (CEB)
          Length = 100

 Score =  113 bits (282), Expect = 7e-25
 Identities = 56/73 (76%), Positives = 64/73 (87%)
 Frame = +1

Query: 79  PPSSNVSNKRLQQTQAQVDEIVDIMKSNVDKVLERDQKLSELDNRAEALQAGASQFEASA 258
           P ++  SN+RLQQTQ QVDE+VDIM+ NVDKVLERDQKLSELD+RA+ALQAGASQFE SA
Sbjct: 5   PTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 64

Query: 259 GKLKRKFWLKNLK 297
            KLKRK+W KN K
Sbjct: 65  AKLKRKYWWKNCK 77
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,355,867
Number of Sequences: 369166
Number of extensions: 1180728
Number of successful extensions: 3389
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3383
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)