Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_C20
(805 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JMH6|TRXR1_MOUSE Thioredoxin reductase 1, cytoplasmic ... 264 2e-70
sp|O89049|TRXR1_RAT Thioredoxin reductase 1, cytoplasmic (T... 259 5e-69
sp|O62768|TRXR1_BOVIN Thioredoxin reductase 1, cytoplasmic ... 258 1e-68
sp|Q16881|TRXR1_HUMAN Thioredoxin reductase 1, cytoplasmic ... 254 1e-67
sp|Q9MYY8|TRXR1_PIG Thioredoxin reductase 1, cytoplasmic (T... 254 1e-67
sp|Q9NNW7|TRXR2_HUMAN Thioredoxin reductase 2, mitochondria... 215 1e-55
sp|Q17745|TRXR_CAEEL Thioredoxin reductase (TR-Se) (TRR) 213 5e-55
sp|Q9Z0J5|TRXR2_RAT Thioredoxin reductase 2, mitochondrial ... 213 6e-55
sp|Q9JLT4|TRXR2_MOUSE Thioredoxin reductase 2, mitochondria... 212 1e-54
sp|P91938|TRXR1_DROME Thioredoxin reductase 1, mitochondria... 200 3e-51
>sp|Q9JMH6|TRXR1_MOUSE Thioredoxin reductase 1, cytoplasmic (TR) (TR1)
Length = 499
Score = 264 bits (674), Expect = 2e-70
Identities = 125/200 (62%), Positives = 153/200 (76%), Gaps = 1/200 (0%)
Frame = +1
Query: 7 IGLDNINLDL-DKNGRVKVTNEEQTNVENVYAIGDIISGGLQLTPVAIQAGKNLARRLYG 183
IGL+ + + + +K G++ VT+EEQTNV +YAIGDI+ G L+LTPVAIQAG+ LA+RLYG
Sbjct: 300 IGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYG 359
Query: 184 GERVLTDYINVPTTVFTPLEYGCIGWPEEDAISKYGAENIEVFHQNFKPLEWTVAHRSDN 363
G V DY NVPTTVFTPLEYGC G EE A+ K+G ENIEV+H F PLEWTV R +N
Sbjct: 360 GSNVKCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNN 419
Query: 364 DCYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRMGATKRDFDDTIGIHPTCSETF 543
CY K+ICN D+ RV+G HVLGPNAGE+TQG+A A++ G TK+ D TIGIHP C+E F
Sbjct: 420 KCYAKIICNLKDDERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIF 479
Query: 544 TTLNITKSSGVDPAQSGC*G 603
TTL++TK SG D QSGC G
Sbjct: 480 TTLSVTKRSGGDILQSGCCG 499
>sp|O89049|TRXR1_RAT Thioredoxin reductase 1, cytoplasmic (TR) (TR1) (NADPH-dependent
thioredoxin reductase)
Length = 498
Score = 259 bits (663), Expect = 5e-69
Identities = 126/200 (63%), Positives = 152/200 (76%), Gaps = 1/200 (0%)
Frame = +1
Query: 7 IGLDNINLDL-DKNGRVKVTNEEQTNVENVYAIGDIISGGLQLTPVAIQAGKNLARRLYG 183
IGL+ + + + +K G++ VT+EEQTNV +YAIGDI+ G L+LTPVAIQAG+ LA+RLYG
Sbjct: 300 IGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYG 359
Query: 184 GERVLTDYINVPTTVFTPLEYGCIGWPEEDAISKYGAENIEVFHQNFKPLEWTVAHRSDN 363
G V DY NVPTTVFTPLEYGC G EE A+ K+G ENIEV+H F PLEWTV R +N
Sbjct: 360 GSTVKCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNN 419
Query: 364 DCYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRMGATKRDFDDTIGIHPTCSETF 543
CY K+ICN DN RV+G HVLGPNAGE+TQG+A A + G TK+ D TIGIHP C+E F
Sbjct: 420 KCYAKVICNLKDNERVVGFHVLGPNAGEVTQGFAAA-KCGLTKQQLDSTIGIHPVCAEIF 478
Query: 544 TTLNITKSSGVDPAQSGC*G 603
TTL++TK SG D QSGC G
Sbjct: 479 TTLSVTKRSGGDILQSGCCG 498
>sp|O62768|TRXR1_BOVIN Thioredoxin reductase 1, cytoplasmic (TR) (TR1)
Length = 499
Score = 258 bits (659), Expect = 1e-68
Identities = 121/200 (60%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
Frame = +1
Query: 7 IGLDNINLDL-DKNGRVKVTNEEQTNVENVYAIGDIISGGLQLTPVAIQAGKNLARRLYG 183
IGL+N+ + + +K G++ VT EEQTNV +YAIGDI+ G L+LTPVAIQAG+ LA+RLYG
Sbjct: 300 IGLENVGVKINEKTGKIPVTEEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYG 359
Query: 184 GERVLTDYINVPTTVFTPLEYGCIGWPEEDAISKYGAENIEVFHQNFKPLEWTVAHRSDN 363
G V DY NVPTTVFTPLEYG G EE A+ K+G EN+EV+H F PLEWT+ R +N
Sbjct: 360 GSTVKCDYENVPTTVFTPLEYGSCGLSEEKAVEKFGEENVEVYHSYFWPLEWTIPSRDNN 419
Query: 364 DCYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRMGATKRDFDDTIGIHPTCSETF 543
CY K++CN DN RV+G HVLGPNAGE+TQG+A A++ G TK D TIGIHP C+E F
Sbjct: 420 KCYAKVVCNIKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKDQLDSTIGIHPVCAEVF 479
Query: 544 TTLNITKSSGVDPAQSGC*G 603
TTL++TK SG + Q+GC G
Sbjct: 480 TTLSVTKRSGGNILQTGCCG 499
>sp|Q16881|TRXR1_HUMAN Thioredoxin reductase 1, cytoplasmic precursor (TR) (TR1)
Length = 499
Score = 254 bits (650), Expect = 1e-67
Identities = 119/200 (59%), Positives = 149/200 (74%), Gaps = 1/200 (0%)
Frame = +1
Query: 7 IGLDNINLDL-DKNGRVKVTNEEQTNVENVYAIGDIISGGLQLTPVAIQAGKNLARRLYG 183
IGL+ + + + +K G++ VT+EEQTNV +YAIGDI+ ++LTPVAIQAG+ LA+RLY
Sbjct: 300 IGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYA 359
Query: 184 GERVLTDYINVPTTVFTPLEYGCIGWPEEDAISKYGAENIEVFHQNFKPLEWTVAHRSDN 363
G V DY NVPTTVFTPLEYG G EE A+ K+G ENIEV+H F PLEWT+ R +N
Sbjct: 360 GSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNN 419
Query: 364 DCYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRMGATKRDFDDTIGIHPTCSETF 543
CY K+ICN DN RV+G HVLGPNAGE+TQG+A A++ G TK+ D TIGIHP C+E F
Sbjct: 420 KCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVF 479
Query: 544 TTLNITKSSGVDPAQSGC*G 603
TTL++TK SG Q+GC G
Sbjct: 480 TTLSVTKRSGASILQAGCCG 499
>sp|Q9MYY8|TRXR1_PIG Thioredoxin reductase 1, cytoplasmic (TR) (TR1)
Length = 499
Score = 254 bits (650), Expect = 1e-67
Identities = 119/200 (59%), Positives = 149/200 (74%), Gaps = 1/200 (0%)
Frame = +1
Query: 7 IGLDNINLDL-DKNGRVKVTNEEQTNVENVYAIGDIISGGLQLTPVAIQAGKNLARRLYG 183
IGL+ + + + +K G++ VT+EEQTNV +YAIGDI+ ++LTPVAIQAG+ LA+RLY
Sbjct: 300 IGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYA 359
Query: 184 GERVLTDYINVPTTVFTPLEYGCIGWPEEDAISKYGAENIEVFHQNFKPLEWTVAHRSDN 363
G V DY NVPTTVFTPLEYG G EE A+ K+G ENIEV+H F PLEWT+ R +N
Sbjct: 360 GSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNN 419
Query: 364 DCYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRMGATKRDFDDTIGIHPTCSETF 543
CY K+ICN DN RV+G HVLGPNAGE+TQG+A A++ G TK+ D TIGIHP C+E F
Sbjct: 420 KCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVF 479
Query: 544 TTLNITKSSGVDPAQSGC*G 603
TTL++TK SG Q+GC G
Sbjct: 480 TTLSVTKRSGASILQAGCCG 499
>sp|Q9NNW7|TRXR2_HUMAN Thioredoxin reductase 2, mitochondrial precursor (TR3) (TR-beta)
(Selenoprotein Z) (SelZ)
Length = 524
Score = 215 bits (547), Expect = 1e-55
Identities = 101/204 (49%), Positives = 144/204 (70%), Gaps = 8/204 (3%)
Frame = +1
Query: 16 DNINLDLDKNG--------RVKVTNEEQTNVENVYAIGDIISGGLQLTPVAIQAGKNLAR 171
D +L+L+K G ++ V + E T+V ++YAIGD++ G +LTP+AI AG+ L +
Sbjct: 321 DTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQ 380
Query: 172 RLYGGERVLTDYINVPTTVFTPLEYGCIGWPEEDAISKYGAENIEVFHQNFKPLEWTVAH 351
RL+GG L DY NVPTTVFTPLEYGC+G EE+A++++G E++EV+H ++KPLE+TVA
Sbjct: 381 RLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAG 440
Query: 352 RSDNDCYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRMGATKRDFDDTIGIHPTC 531
R + CY K++C + V+GLH LGPNAGE+TQG+A+ ++ GA+ T+GIHPTC
Sbjct: 441 RDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTC 500
Query: 532 SETFTTLNITKSSGVDPAQSGC*G 603
SE L I+K SG+DP +GC G
Sbjct: 501 SEEVVKLRISKRSGLDPTVTGCCG 524
>sp|Q17745|TRXR_CAEEL Thioredoxin reductase (TR-Se) (TRR)
Length = 667
Score = 213 bits (542), Expect = 5e-55
Identities = 102/202 (50%), Positives = 141/202 (69%), Gaps = 2/202 (0%)
Frame = +1
Query: 4 NIGLDNINLDLDKNGRVKVTNEEQTNVENVYAIGDIISGGLQLTPVAIQAGKNLARRLYG 183
++GL I ++ K+ +V E+ T + VYAIGD++ G +LTPVAIQAG+ L RR++
Sbjct: 466 DVGLTTIGVERAKSKKVLGRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRRIFD 525
Query: 184 GERVLTDYINVPTTVFTPLEYGCIGWPEEDAISKYGAENIEVFHQNFKPLEWTVAHRSDN 363
G LT+Y +PTTVFTPLEYGC G EEDA+ KYG +NI ++H F PLE+T++ R D
Sbjct: 526 GANELTEYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYTISERMDK 585
Query: 364 D-CYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRMGATKRDFDDTIGIHPTCSET 540
D CY K+IC +++ +V+G H+L PNAGE+TQG+ +A+++ A K DFD IGIHPT +E
Sbjct: 586 DHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIALKLAAKKADFDRLIGIHPTVAEN 645
Query: 541 FTTLNITKSSGVDPAQ-SGC*G 603
FTTL + K G + Q SGC G
Sbjct: 646 FTTLTLEKKEGDEELQASGCCG 667
>sp|Q9Z0J5|TRXR2_RAT Thioredoxin reductase 2, mitochondrial precursor (TR3)
Length = 526
Score = 213 bits (541), Expect = 6e-55
Identities = 101/201 (50%), Positives = 143/201 (71%), Gaps = 1/201 (0%)
Frame = +1
Query: 4 NIGLDNINLDLD-KNGRVKVTNEEQTNVENVYAIGDIISGGLQLTPVAIQAGKNLARRLY 180
N+ L+ ++ + KN ++ V +E T+V ++YAIGD+ G +LTP AI+AGK LA+RL+
Sbjct: 326 NLNLEKAGVNTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLF 385
Query: 181 GGERVLTDYINVPTTVFTPLEYGCIGWPEEDAISKYGAENIEVFHQNFKPLEWTVAHRSD 360
G L +Y NVPTTVFTPLEYGC+G EE+A++ +G E+IEV+H +KPLE+TVA R
Sbjct: 386 GKSSTLMNYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHIEVYHAYYKPLEFTVADRDA 445
Query: 361 NDCYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRMGATKRDFDDTIGIHPTCSET 540
+ CY K++C + V+GLH LGPNAGE+TQG+A+ ++ GA+ T+GIHPTCSE
Sbjct: 446 SQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIQCGASYAQVMQTVGIHPTCSEE 505
Query: 541 FTTLNITKSSGVDPAQSGC*G 603
L+I+K SG+DP +GC G
Sbjct: 506 VVKLHISKRSGLDPTVTGCCG 526
>sp|Q9JLT4|TRXR2_MOUSE Thioredoxin reductase 2, mitochondrial precursor (TR3)
Length = 524
Score = 212 bits (539), Expect = 1e-54
Identities = 98/188 (52%), Positives = 136/188 (72%)
Frame = +1
Query: 40 KNGRVKVTNEEQTNVENVYAIGDIISGGLQLTPVAIQAGKNLARRLYGGERVLTDYINVP 219
KN ++ V +E T+V ++YAIGD+ G +LTP AI+AGK LA+RL+G L DY NVP
Sbjct: 337 KNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVP 396
Query: 220 TTVFTPLEYGCIGWPEEDAISKYGAENIEVFHQNFKPLEWTVAHRSDNDCYGKLICNKSD 399
TTVFTPLEYGC+G EE+A++ +G E++EV+H +KPLE+TVA R + CY K++C +
Sbjct: 397 TTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREP 456
Query: 400 NMRVIGLHVLGPNAGEITQGYAVAMRMGATKRDFDDTIGIHPTCSETFTTLNITKSSGVD 579
V+GLH LGPNAGE+TQG+A+ ++ GA+ T+GIHPTCSE L+I+K SG++
Sbjct: 457 PQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLHISKRSGLE 516
Query: 580 PAQSGC*G 603
P +GC G
Sbjct: 517 PTVTGCCG 524
>sp|P91938|TRXR1_DROME Thioredoxin reductase 1, mitochondrial precursor (TrxR-1)
Length = 596
Score = 200 bits (509), Expect = 3e-51
Identities = 97/198 (48%), Positives = 134/198 (67%)
Frame = +1
Query: 4 NIGLDNINLDLDKNGRVKVTNEEQTNVENVYAIGDIISGGLQLTPVAIQAGKNLARRLYG 183
++ L N + + K+ ++ V ++E TNV N+YA+GDII G +LTPVA+ AG+ LARRLYG
Sbjct: 398 DLNLPNAGVTVQKD-KIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYG 456
Query: 184 GERVLTDYINVPTTVFTPLEYGCIGWPEEDAISKYGAENIEVFHQNFKPLEWTVAHRSDN 363
G DY +V TTVFTPLEY C+G EEDA+ ++GA+ IEVFH +KP E+ + +S
Sbjct: 457 GSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVR 516
Query: 364 DCYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRMGATKRDFDDTIGIHPTCSETF 543
CY K + + + RV GLH +GP AGE+ QG+A A++ G T +T+GIHPT +E F
Sbjct: 517 YCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEF 576
Query: 544 TTLNITKSSGVDPAQSGC 597
T L ITK SG+DP + C
Sbjct: 577 TRLAITKRSGLDPTPASC 594
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,325,469
Number of Sequences: 369166
Number of extensions: 1976552
Number of successful extensions: 5006
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4862
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)