Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_C18
(813 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (He... 322 8e-88
sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (He... 322 8e-88
sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (He... 322 8e-88
sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (He... 318 8e-87
sp|P27541|HSP70_BRUMA Heat shock 70 kDa protein 318 1e-86
sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HS... 316 5e-86
sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (He... 315 1e-85
sp|P47773|HSP7C_ICTPU Heat shock cognate 71 kDa protein 313 5e-85
sp|Q91233|HSP70_ONCTS Heat shock 70 kDa protein (HSP70) 310 2e-84
sp|P09446|HSP7A_CAEEL Heat shock 70 kDa protein A 308 1e-83
>sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|Q71U34|HSP7C_SAGOE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
(Intracellular vitamin D binding protein 1)
Length = 646
Score = 322 bits (825), Expect = 8e-88
Identities = 168/267 (62%), Positives = 187/267 (70%)
Frame = +3
Query: 3 LSGDKSEAVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVL 182
LSGDKSE VQD GIETAGGVMT LIKRN YSDNQPGVL
Sbjct: 380 LSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVL 439
Query: 183 IQVYEGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKEN 362
IQVYEGERAMTKDNNLLGKFEL GIPPAPRGVPQIEVTFDIDANGILNVSAV+K TGKEN
Sbjct: 440 IQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKEN 499
Query: 363 KITITNDKGRLSKDDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATVEDEKLK 542
KITITNDKGRLSK+DIERMV ++++KNSLESYA+ MKATVEDEKL+
Sbjct: 500 KITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQ 559
Query: 543 DKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXX 722
KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ
Sbjct: 560 GKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619
Query: 723 XXXXXXXXXXXXXXXXXKQGPTVEEVD 803
GPT+EEVD
Sbjct: 620 GMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|P63018|HSP7C_RAT Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 322 bits (825), Expect = 8e-88
Identities = 168/267 (62%), Positives = 187/267 (70%)
Frame = +3
Query: 3 LSGDKSEAVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVL 182
LSGDKSE VQD GIETAGGVMT LIKRN YSDNQPGVL
Sbjct: 380 LSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVL 439
Query: 183 IQVYEGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKEN 362
IQVYEGERAMTKDNNLLGKFEL GIPPAPRGVPQIEVTFDIDANGILNVSAV+K TGKEN
Sbjct: 440 IQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKEN 499
Query: 363 KITITNDKGRLSKDDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATVEDEKLK 542
KITITNDKGRLSK+DIERMV ++++KNSLESYA+ MKATVEDEKL+
Sbjct: 500 KITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQ 559
Query: 543 DKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXX 722
KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ
Sbjct: 560 GKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619
Query: 723 XXXXXXXXXXXXXXXXXKQGPTVEEVD 803
GPT+EEVD
Sbjct: 620 GMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 322 bits (825), Expect = 8e-88
Identities = 168/267 (62%), Positives = 187/267 (70%)
Frame = +3
Query: 3 LSGDKSEAVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVL 182
LSGDKSE VQD GIETAGGVMT LIKRN YSDNQPGVL
Sbjct: 380 LSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVL 439
Query: 183 IQVYEGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKEN 362
IQVYEGERAMTKDNNLLGKFEL GIPPAPRGVPQIEVTFDIDANGILNVSAV+K TGKEN
Sbjct: 440 IQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKEN 499
Query: 363 KITITNDKGRLSKDDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATVEDEKLK 542
KITITNDKGRLSK+DIERMV ++++KNSLESYA+ MKATVEDEKL+
Sbjct: 500 KITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQ 559
Query: 543 DKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXX 722
KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ
Sbjct: 560 GKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619
Query: 723 XXXXXXXXXXXXXXXXXKQGPTVEEVD 803
GPT+EEVD
Sbjct: 620 GMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 649
Score = 318 bits (816), Expect = 8e-87
Identities = 168/270 (62%), Positives = 187/270 (69%), Gaps = 3/270 (1%)
Frame = +3
Query: 3 LSGDKSEAVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVL 182
LSGDKSE VQD GIETAGGVMT LIKRN YSDNQPGVL
Sbjct: 380 LSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVL 439
Query: 183 IQVYEGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKEN 362
IQVYEGERAMTKDNNLLGKFEL GIPPAPRGVPQIEVTFDIDANGI+NVSAV+K TGKEN
Sbjct: 440 IQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIMNVSAVDKSTGKEN 499
Query: 363 KITITNDKGRLSKDDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATVEDEKLK 542
KITITNDKGRLSK+DIERMV +++AKN LESYA+ MK+TVEDEKLK
Sbjct: 500 KITITNDKGRLSKEDIERMVQEAEKYKAEDDVQRDKVSAKNGLESYAFNMKSTVEDEKLK 559
Query: 543 DKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ---XXXX 713
KIS+ D++ I+DKC E IGWLDKNQ A ++EF++ KELEKVCNPI+TK+YQ
Sbjct: 560 GKISDEDKQKILDKCNEVIGWLDKNQTAEREEFEHQQKELEKVCNPIITKLYQSAGGMPG 619
Query: 714 XXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 803
GPT+EEVD
Sbjct: 620 GMPEGMPGGFPGAGAAPGGGSSGPTIEEVD 649
>sp|P27541|HSP70_BRUMA Heat shock 70 kDa protein
Length = 644
Score = 318 bits (815), Expect = 1e-86
Identities = 170/267 (63%), Positives = 186/267 (69%)
Frame = +3
Query: 3 LSGDKSEAVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVL 182
LSGDKSEAVQD GIETAGGVMTALIKRN YSDNQPGVL
Sbjct: 379 LSGDKSEAVQDLLLLDVAPLSLGIETAGGVMTALIKRNTTIPTKTSETFTTYSDNQPGVL 438
Query: 183 IQVYEGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKEN 362
IQVYEGERA+TKDNNLLGKFEL+GIPPAPRGVPQIEVTFDIDANGILNVSA +K TGK+N
Sbjct: 439 IQVYEGERALTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSAQDKSTGKQN 498
Query: 363 KITITNDKGRLSKDDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATVEDEKLK 542
KITITNDKGRLSKD+IERMV RIAAKN+LESYA+ MK T+EDEKLK
Sbjct: 499 KITITNDKGRLSKDEIERMVQEAEKYKADDEAQKDRIAAKNALESYAFNMKQTIEDEKLK 558
Query: 543 DKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXX 722
DKISE D+K I +KC E + WLD NQ A KDEF++ KELE VCNPI+TK+YQ
Sbjct: 559 DKISEEDKKKIQEKCDETVRWLDGNQTAEKDEFEHRQKELESVCNPIITKLYQSAGGMPG 618
Query: 723 XXXXXXXXXXXXXXXXXKQGPTVEEVD 803
GPT+EEVD
Sbjct: 619 GMPGGMPGGAPGAGSTG-GGPTIEEVD 644
>sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HSP70)
Length = 651
Score = 316 bits (809), Expect = 5e-86
Identities = 166/272 (61%), Positives = 187/272 (68%), Gaps = 5/272 (1%)
Frame = +3
Query: 3 LSGDKSEAVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVL 182
LSGDKSE VQD GIETAGGVMT LIKRN YSDNQPGVL
Sbjct: 380 LSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVL 439
Query: 183 IQVYEGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKEN 362
IQVYEGERAMTKDNNLLGKFEL GIPPAPRGVPQIEVTFDIDANGI+NVSA +K TGKEN
Sbjct: 440 IQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIMNVSAADKSTGKEN 499
Query: 363 KITITNDKGRLSKDDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATVEDEKLK 542
KITITNDKGRLSK+DIERMV ++++KNSLESYA+ MK+TVEDEKL+
Sbjct: 500 KITITNDKGRLSKEDIERMVQEAEKYKCEDDVQRDKVSSKNSLESYAFNMKSTVEDEKLQ 559
Query: 543 DKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ-----XX 707
KIS+ D+ I++KC E IGWLDKNQ A K+E+++H KELEKVCNPI+TK+YQ
Sbjct: 560 GKISDEDKTKILEKCNEVIGWLDKNQTAEKEEYEHHQKELEKVCNPIITKLYQGAGGMPG 619
Query: 708 XXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 803
GPT+EEVD
Sbjct: 620 GMPEGMAGGFPGAGGAAPGGGGSSGPTIEEVD 651
>sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 650
Score = 315 bits (806), Expect = 1e-85
Identities = 167/271 (61%), Positives = 187/271 (69%), Gaps = 4/271 (1%)
Frame = +3
Query: 3 LSGDKSEAVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVL 182
LSGDKSE VQD GIETAGGVMT LIKRN YSDNQPGVL
Sbjct: 380 LSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVL 439
Query: 183 IQVYEGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKEN 362
IQVYEGERAMTKDNNLLGKFEL GIPPAPRGVPQIEVTFDIDANGILNVSAV+K TGKEN
Sbjct: 440 IQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKEN 499
Query: 363 KITITNDKGRLSKDDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATVEDEKLK 542
KITITNDKGRLSK+DIERMV ++++KNSL+SYA+ MKATVEDEKL+
Sbjct: 500 KITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLKSYAFNMKATVEDEKLQ 559
Query: 543 DKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ----XXX 710
KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ
Sbjct: 560 GKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619
Query: 711 XXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 803
GPT+EEVD
Sbjct: 620 GMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 650
>sp|P47773|HSP7C_ICTPU Heat shock cognate 71 kDa protein
Length = 649
Score = 313 bits (801), Expect = 5e-85
Identities = 165/268 (61%), Positives = 183/268 (68%), Gaps = 3/268 (1%)
Frame = +3
Query: 9 GDKSEAVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQ 188
GDKSE VQD GIETAGGVMT LIKRN YSDNQPGVLIQ
Sbjct: 382 GDKSENVQDLVLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQ 441
Query: 189 VYEGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKI 368
VYEGERAMTKDNNLLGKFEL GIPPAPRGVPQIEVTFDIDANGI+NVSAV+K TGKENKI
Sbjct: 442 VYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIMNVSAVDKSTGKENKI 501
Query: 369 TITNDKGRLSKDDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATVEDEKLKDK 548
TITNDKGRLSK+DIERMV +++AKN LESYA+ MK+TVEDEKLK K
Sbjct: 502 TITNDKGRLSKEDIERMVQEAEKYKAEDDVQRDKVSAKNGLESYAFNMKSTVEDEKLKGK 561
Query: 549 ISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ---XXXXXX 719
IS+ D+ I+DKC E I WLDKNQ A KDE+++ K+LEKVCNPI+TK+YQ
Sbjct: 562 ISDEDKHKILDKCNEVISWLDKNQTAEKDEYEHQQKDLEKVCNPIITKLYQSDGGMPGGM 621
Query: 720 XXXXXXXXXXXXXXXXXXKQGPTVEEVD 803
GPT+EEVD
Sbjct: 622 PDGMPGGFQELGAAPGGGSSGPTIEEVD 649
>sp|Q91233|HSP70_ONCTS Heat shock 70 kDa protein (HSP70)
Length = 644
Score = 310 bits (795), Expect = 2e-84
Identities = 162/267 (60%), Positives = 186/267 (69%)
Frame = +3
Query: 3 LSGDKSEAVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVL 182
LSGDKSE VQD GIETAGGVMTALIKRN YSDNQPGV+
Sbjct: 382 LSGDKSENVQDLLLLDVAPLSLGIETAGGVMTALIKRNTTIPSKQTQTFTTYSDNQPGVM 441
Query: 183 IQVYEGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKEN 362
IQVYEGERAMTKDNNLLGKFEL+GIPPAPRGVPQIEVTFDIDANGILNVSAV+K TGKEN
Sbjct: 442 IQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKEN 501
Query: 363 KITITNDKGRLSKDDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATVEDEKLK 542
KITITNDKGRLSK+DIERMV +IAAKNSLESYA+ MK++VED+ +K
Sbjct: 502 KITITNDKGRLSKEDIERMVQDADKYKAEDDAQREKIAAKNSLESYAFNMKSSVEDDNMK 561
Query: 543 DKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXX 722
KIS+ D+K +VD+C + I WL+ NQ K+E+++ KELEKVC PI+TK+YQ
Sbjct: 562 GKISQEDKKKVVDRCDQTISWLENNQLGDKEEYEHQLKELEKVCQPIITKLYQ----QGG 617
Query: 723 XXXXXXXXXXXXXXXXXKQGPTVEEVD 803
QGPT+EE+D
Sbjct: 618 MPTGCCGDQARTSSGDSSQGPTIEEID 644
>sp|P09446|HSP7A_CAEEL Heat shock 70 kDa protein A
Length = 640
Score = 308 bits (789), Expect = 1e-83
Identities = 165/267 (61%), Positives = 182/267 (68%)
Frame = +3
Query: 3 LSGDKSEAVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVL 182
LSGDKSEAVQD GIETAGGVMTALIKRN YSDNQPGVL
Sbjct: 381 LSGDKSEAVQDLLLLDVAPLSLGIETAGGVMTALIKRNTTIPTKTAQTFTTYSDNQPGVL 440
Query: 183 IQVYEGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKEN 362
IQVYEGERAMTKDNNLLGKFEL+GIPPAPRGVPQIEVTFDIDANGILNVSA +K TGK+N
Sbjct: 441 IQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSATDKSTGKQN 500
Query: 363 KITITNDKGRLSKDDIERMVAXXXXXXXXXXXXXXRIAAKNSLESYAYQMKATVEDEKLK 542
KITITNDKGRLSKDDIERMV RI AKN LESYA+ +K T+EDEKLK
Sbjct: 501 KITITNDKGRLSKDDIERMVNEAEKYKADDEAQKDRIGAKNGLESYAFNLKQTIEDEKLK 560
Query: 543 DKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXX 722
DKIS D+K I DKC E + WLD NQ A K+EF++ K+LE + NPI++K+YQ
Sbjct: 561 DKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPP 620
Query: 723 XXXXXXXXXXXXXXXXXKQGPTVEEVD 803
GPT+EEVD
Sbjct: 621 GAAPGGAAGGAG-------GPTIEEVD 640
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,319,246
Number of Sequences: 369166
Number of extensions: 1080859
Number of successful extensions: 3954
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3721
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7763237265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)