Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_C13
(776 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondri... 404 e-112
sp|Q5NVM5|CH60_PONPY 60 kDa heat shock protein, mitochondri... 404 e-112
sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial... 402 e-112
sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondri... 402 e-112
sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondri... 401 e-112
sp|Q9VMN5|CH60C_DROME Probable 60 kDa heat shock protein ho... 385 e-107
sp|P50140|CH60_CAEEL Chaperonin homolog HSP60, mitochondria... 360 2e-99
sp|P25420|CH63_HELVI 63 kDa chaperonin, mitochondrial precu... 336 5e-92
sp|Q9VPS5|CH60B_DROME Probable 60 kDa heat shock protein ho... 312 6e-85
sp|O74261|HSP60_CANAL Heat shock protein 60, mitochondrial ... 308 8e-84
>sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (P60 lymphocyte
protein) (HuCHA60)
Length = 573
Score = 404 bits (1038), Expect = e-112
Identities = 199/258 (77%), Positives = 230/258 (89%)
Frame = +2
Query: 2 NIGAKLVQDVANNTNEEAGDGTTAATVLARAIAKEGFEKISKGANPIDFRRGVMMAVDNV 181
NIGAKLVQDVANNTNEEAGDGTT ATVLAR+IAKEGFEKISKGANP++ RRGVM+AVD V
Sbjct: 92 NIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAV 151
Query: 182 VASLKAMSKPVTTPEEIAQVATISANGDRSIGDLISEAMKKVGKDGTITVKDGKTLHDEL 361
+A LK SKPVTTPEEIAQVATISANGD+ IG++IS+AMKKVG+ G ITVKDGKTL+DEL
Sbjct: 152 IAELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDEL 211
Query: 362 EVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQKKPL 541
E+IEGMKFDRGYISPYFINT KG KCEFQDA++L SEKKISSIQS++P LE+ + +KPL
Sbjct: 212 EIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSIQSIVPALEIANAHRKPL 271
Query: 542 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 721
+I+AEDVDGEAL+ LVLNRLK+GLQV AVKAPGFGDNRKN L+DMA +TGG VFG+E T
Sbjct: 272 VIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLT 331
Query: 722 YKIENVQLHDLGRAQEIL 775
+E+VQ HDLG+ E++
Sbjct: 332 LNLEDVQPHDLGKVGEVI 349
>sp|Q5NVM5|CH60_PONPY 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
Length = 573
Score = 404 bits (1037), Expect = e-112
Identities = 198/258 (76%), Positives = 230/258 (89%)
Frame = +2
Query: 2 NIGAKLVQDVANNTNEEAGDGTTAATVLARAIAKEGFEKISKGANPIDFRRGVMMAVDNV 181
NIGAKLVQDVANNTNEEAGDGTT ATVLAR+IAKEGFEKISKGANP++ RRGVM+AVD V
Sbjct: 92 NIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAV 151
Query: 182 VASLKAMSKPVTTPEEIAQVATISANGDRSIGDLISEAMKKVGKDGTITVKDGKTLHDEL 361
+A LK SKPVTTPEEIAQVATISANGD+ IG++IS+AMKKVG+ G ITVKDGKTL+DEL
Sbjct: 152 IAELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDEL 211
Query: 362 EVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQKKPL 541
E+IEGMKFDRGYISPYFINT KG KCEFQDA++L SEKKISS+QS++P LE+ + +KPL
Sbjct: 212 EIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPL 271
Query: 542 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 721
+I+AEDVDGEAL+ LVLNRLK+GLQV AVKAPGFGDNRKN L+DMA +TGG VFG+E T
Sbjct: 272 VIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLT 331
Query: 722 YKIENVQLHDLGRAQEIL 775
+E+VQ HDLG+ E++
Sbjct: 332 LNLEDVQPHDLGKVGEVI 349
>sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (HSP-65)
sp|P63038|CH60_MOUSE 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (HSP-65)
Length = 573
Score = 402 bits (1034), Expect = e-112
Identities = 197/258 (76%), Positives = 229/258 (88%)
Frame = +2
Query: 2 NIGAKLVQDVANNTNEEAGDGTTAATVLARAIAKEGFEKISKGANPIDFRRGVMMAVDNV 181
NIGAKLVQDVANNTNEEAGDGTT ATVLAR+IAKEGFEKISKGANP++ RRGVM+AVD V
Sbjct: 92 NIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAV 151
Query: 182 VASLKAMSKPVTTPEEIAQVATISANGDRSIGDLISEAMKKVGKDGTITVKDGKTLHDEL 361
+A LK SKPVTTPEEIAQVATISANGD+ IG++IS+AMKKVG+ G ITVKDGKTL+DEL
Sbjct: 152 IAELKKQSKPVTTPEEIAQVATISANGDKDIGNIISDAMKKVGRKGVITVKDGKTLNDEL 211
Query: 362 EVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQKKPL 541
E+IEGMKFDRGYISPYFINT KG KCEFQDA++L SEKKISS+QS++P LE+ + +KPL
Sbjct: 212 EIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPL 271
Query: 542 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 721
+I+AEDVDGEAL+ LVLNRLK+GLQV AVKAPGFGDNRKN L+DMA +TGG VFG+E
Sbjct: 272 VIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLN 331
Query: 722 YKIENVQLHDLGRAQEIL 775
+E+VQ HDLG+ E++
Sbjct: 332 LNLEDVQAHDLGKVGEVI 349
>sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1)
Length = 573
Score = 402 bits (1034), Expect = e-112
Identities = 197/258 (76%), Positives = 229/258 (88%)
Frame = +2
Query: 2 NIGAKLVQDVANNTNEEAGDGTTAATVLARAIAKEGFEKISKGANPIDFRRGVMMAVDNV 181
NIGAKLVQDVANNTNEEAGDGTT ATVLAR+IAKEGFEKISKGANP++ RRGVM+AVD V
Sbjct: 92 NIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAV 151
Query: 182 VASLKAMSKPVTTPEEIAQVATISANGDRSIGDLISEAMKKVGKDGTITVKDGKTLHDEL 361
+A LK SKPVTTPEEIAQVATISANGD+ IG++IS+AMKKVG+ G ITVKDGKTL+DEL
Sbjct: 152 IAELKKQSKPVTTPEEIAQVATISANGDKDIGNIISDAMKKVGRKGVITVKDGKTLNDEL 211
Query: 362 EVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQKKPL 541
E+IEGMKFDRGYISPYFINT KG KCEFQDA++L SEKKISS+QS++P LE+ + +KPL
Sbjct: 212 EIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPL 271
Query: 542 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 721
+I+AEDVDGEAL+ LVLNRLK+GLQV AVKAPGFGDNRKN L+DMA +TGG VFG+E
Sbjct: 272 VIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLN 331
Query: 722 YKIENVQLHDLGRAQEIL 775
+E+VQ HDLG+ E++
Sbjct: 332 LNLEDVQAHDLGKVGEVI 349
>sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1)
Length = 573
Score = 401 bits (1031), Expect = e-112
Identities = 199/258 (77%), Positives = 234/258 (90%)
Frame = +2
Query: 2 NIGAKLVQDVANNTNEEAGDGTTAATVLARAIAKEGFEKISKGANPIDFRRGVMMAVDNV 181
NIGAKLVQDVANNTNEEAGDGTT ATVLARAIAKEGFEKISKGANP++ RRGVM+AV+ V
Sbjct: 88 NIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPVEIRRGVMLAVETV 147
Query: 182 VASLKAMSKPVTTPEEIAQVATISANGDRSIGDLISEAMKKVGKDGTITVKDGKTLHDEL 361
+LK MS+PV+TPEEIAQVATISANGD++IG+LISEAMKKVG+DG ITVKDGKTL DEL
Sbjct: 148 KDNLKTMSRPVSTPEEIAQVATISANGDQAIGNLISEAMKKVGRDGVITVKDGKTLTDEL 207
Query: 362 EVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQKKPL 541
EVIEGMKFDRGYISPYFIN+ KGAK EFQDA +L SEKKISS+QS+IP LE+ + Q+KPL
Sbjct: 208 EVIEGMKFDRGYISPYFINSSKGAKVEFQDALLLLSEKKISSVQSIIPALELANAQRKPL 267
Query: 542 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 721
+I+AED+DGEAL+ LV+NRLK+GLQV AVKAPGFGDNRK+TL DMA ++GGIVFGD+AD
Sbjct: 268 VIIAEDIDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKSTLTDMAIASGGIVFGDDADL 327
Query: 722 YKIENVQLHDLGRAQEIL 775
K+E+V++ DLG+ E++
Sbjct: 328 VKLEDVKVSDLGQVGEVV 345
>sp|Q9VMN5|CH60C_DROME Probable 60 kDa heat shock protein homolog 2, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat
shock protein 60) (HSP-60)
Length = 576
Score = 385 bits (988), Expect = e-107
Identities = 187/258 (72%), Positives = 226/258 (87%)
Frame = +2
Query: 2 NIGAKLVQDVANNTNEEAGDGTTAATVLARAIAKEGFEKISKGANPIDFRRGVMMAVDNV 181
NIGAKLVQDVANNTNEEAGDGTT ATVLARAIAKEGFEKIS+GA+P++ RRGVM+A++ V
Sbjct: 92 NIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISRGASPVEIRRGVMLAIETV 151
Query: 182 VASLKAMSKPVTTPEEIAQVATISANGDRSIGDLISEAMKKVGKDGTITVKDGKTLHDEL 361
+L+ +S+PV TPEEI QVATISANGD+S+G+LISEA+KKVG+DG ITVKDGKTL DEL
Sbjct: 152 KDNLRRLSRPVNTPEEICQVATISANGDKSVGNLISEAIKKVGRDGVITVKDGKTLCDEL 211
Query: 362 EVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQKKPL 541
EVIEGMKFDRGYISPYFINT KGAK EFQDA +LF EKKI S S++P LE+ + Q+KPL
Sbjct: 212 EVIEGMKFDRGYISPYFINTSKGAKVEFQDALLLFCEKKIKSAPSIVPALELANAQRKPL 271
Query: 542 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 721
+I+AED++ EAL+ LV+NRLK+GLQVCAVKAPGFGDNRK L DMA +TGGIVFGDEA+
Sbjct: 272 VIIAEDLEAEALSTLVVNRLKVGLQVCAVKAPGFGDNRKENLMDMAVATGGIVFGDEANM 331
Query: 722 YKIENVQLHDLGRAQEIL 775
++E++++ D GR E++
Sbjct: 332 VRLEDIKMSDFGRVGEVV 349
>sp|P50140|CH60_CAEEL Chaperonin homolog HSP60, mitochondrial precursor (Heat shock
protein 60) (HSP-60)
Length = 568
Score = 360 bits (925), Expect = 2e-99
Identities = 177/257 (68%), Positives = 215/257 (83%)
Frame = +2
Query: 2 NIGAKLVQDVANNTNEEAGDGTTAATVLARAIAKEGFEKISKGANPIDFRRGVMMAVDNV 181
N+GAKL+QDVAN NEEAGDGTT ATVLARAIAKEGFE I +G N ++ RRGVM AV+ V
Sbjct: 83 NLGAKLIQDVANKANEEAGDGTTCATVLARAIAKEGFESIRQGGNAVEIRRGVMNAVEVV 142
Query: 182 VASLKAMSKPVTTPEEIAQVATISANGDRSIGDLISEAMKKVGKDGTITVKDGKTLHDEL 361
VA LK +SK VTTPEEIAQVATISANGD +G+LIS+AMKKVG G ITVKDGKTL+DEL
Sbjct: 143 VAELKKISKKVTTPEEIAQVATISANGDTVVGNLISDAMKKVGTTGVITVKDGKTLNDEL 202
Query: 362 EVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQKKPL 541
E+IEGMKFDRGYISPYFI + KGAK E++ A +L SEKKIS +Q ++P LE+ ++ ++PL
Sbjct: 203 ELIEGMKFDRGYISPYFITSAKGAKVEYEKALVLLSEKKISQVQDIVPALELANKLRRPL 262
Query: 542 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 721
+I+AEDVDGEALT LVLNRLK+GLQV A+KAPGFGDNRKNTL+DM +TG +FGD+++
Sbjct: 263 VIIAEDVDGEALTTLVLNRLKVGLQVVAIKAPGFGDNRKNTLKDMGIATGATIFGDDSNL 322
Query: 722 YKIENVQLHDLGRAQEI 772
KIE++ +DLG E+
Sbjct: 323 IKIEDITANDLGEVDEV 339
>sp|P25420|CH63_HELVI 63 kDa chaperonin, mitochondrial precursor (p63)
Length = 569
Score = 336 bits (861), Expect = 5e-92
Identities = 168/258 (65%), Positives = 206/258 (79%)
Frame = +2
Query: 2 NIGAKLVQDVANNTNEEAGDGTTAATVLARAIAKEGFEKISKGANPIDFRRGVMMAVDNV 181
NIGA+LVQ+VAN TNEEAGDGTT ATVLAR IAKEGFE IS+GANPI+ R+GVM+AV++V
Sbjct: 95 NIGARLVQNVANKTNEEAGDGTTTATVLARPIAKEGFENISRGANPIEIRKGVMLAVESV 154
Query: 182 VASLKAMSKPVTTPEEIAQVATISANGDRSIGDLISEAMKKVGKDGTITVKDGKTLHDEL 361
LK MSKPV T EEI QVATISANGD SIG LI+ AM +VGK+G ITVKDGKTL DEL
Sbjct: 155 KRQLKEMSKPVNTSEEIEQVATISANGDESIGKLIAAAMNRVGKNGVITVKDGKTLEDEL 214
Query: 362 EVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQKKPL 541
E+IEGMKFDRGY+SPYFIN++KG K E+ DA +L+SEKKI ++P LE+ + QKKPL
Sbjct: 215 EIIEGMKFDRGYVSPYFINSNKGPKVEYNDALVLYSEKKIYYASQVVPALELANSQKKPL 274
Query: 542 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 721
+I+AED DGE L+ LV+N+LK+GL V AVKAPGFG+ R N L DMA +TGG VF D+ +
Sbjct: 275 VIIAEDYDGEPLSVLVVNKLKIGLPVVAVKAPGFGEYRTNALLDMAAATGG-VFEDDTNL 333
Query: 722 YKIENVQLHDLGRAQEIL 775
++E+ Q G+ E++
Sbjct: 334 VRLEDCQAESFGQVGEVI 351
>sp|Q9VPS5|CH60B_DROME Probable 60 kDa heat shock protein homolog 1, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat
shock protein 60) (HSP-60)
Length = 648
Score = 312 bits (800), Expect = 6e-85
Identities = 153/256 (59%), Positives = 199/256 (77%)
Frame = +2
Query: 2 NIGAKLVQDVANNTNEEAGDGTTAATVLARAIAKEGFEKISKGANPIDFRRGVMMAVDNV 181
N+GAKLVQDVA+NTNE AGDGTT ATVLARAIAKEGF +I+ GANP++ RRGVM+AVD V
Sbjct: 86 NLGAKLVQDVADNTNESAGDGTTTATVLARAIAKEGFNQITMGANPVEIRRGVMLAVDVV 145
Query: 182 VASLKAMSKPVTTPEEIAQVATISANGDRSIGDLISEAMKKVGKDGTITVKDGKTLHDEL 361
LK MSK V T EEI QVAT+SANGD IG LI EA KVG GTITVKDGK L DEL
Sbjct: 146 KDKLKEMSKAVETREEIQQVATLSANGDTEIGRLIGEATDKVGPRGTITVKDGKRLKDEL 205
Query: 362 EVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQKKPL 541
+I+G++FD GY+SP+F+N+ KG+K EF +A ++ S KKI+ + ++ LE + +Q++PL
Sbjct: 206 NIIQGLRFDNGYVSPFFVNSSKGSKVEFANALVMISLKKITGLSQIVKGLEQSLRQRRPL 265
Query: 542 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 721
+I+AED+ GEAL ALVLN+L+LGLQVCAVK+P +G +RK + D++ +TG +FGD+ +
Sbjct: 266 IIIAEDISGEALNALVLNKLRLGLQVCAVKSPSYGHHRKELIGDISAATGATIFGDDINY 325
Query: 722 YKIENVQLHDLGRAQE 769
K+E +L DLG+ E
Sbjct: 326 SKMEEAKLEDLGQVGE 341
>sp|O74261|HSP60_CANAL Heat shock protein 60, mitochondrial precursor (60 kDa chaperonin)
(Protein Cpn60)
Length = 566
Score = 308 bits (790), Expect = 8e-84
Identities = 157/254 (61%), Positives = 197/254 (77%)
Frame = +2
Query: 2 NIGAKLVQDVANNTNEEAGDGTTAATVLARAIAKEGFEKISKGANPIDFRRGVMMAVDNV 181
++GAKL+Q+VA+ TNE AGDGTT+ATVL R+I E + ++ G NP+D RRG AV+ V
Sbjct: 84 DLGAKLLQEVASKTNESAGDGTTSATVLGRSIFTESVKNVAAGCNPMDLRRGSQAAVEAV 143
Query: 182 VASLKAMSKPVTTPEEIAQVATISANGDRSIGDLISEAMKKVGKDGTITVKDGKTLHDEL 361
+ L+ K +TT EEIAQVATISANGD+ IGDL++ AM+KVGK+G ITVK+GKTL DEL
Sbjct: 144 IEFLQKNKKEITTSEEIAQVATISANGDKHIGDLLANAMEKVGKEGVITVKEGKTLEDEL 203
Query: 362 EVIEGMKFDRGYISPYFINTDKGAKCEFQDAFILFSEKKISSIQSLIPVLEMTHQQKKPL 541
EV EGMKFDRG+ISPYFI K K EF++ IL SEKKISSIQ ++P LE+++Q ++PL
Sbjct: 204 EVTEGMKFDRGFISPYFITNTKTGKVEFENPLILLSEKKISSIQDILPSLELSNQTRRPL 263
Query: 542 LIVAEDVDGEALTALVLNRLKLGLQVCAVKAPGFGDNRKNTLRDMATSTGGIVFGDEADT 721
LI+AEDVDGEAL A +LN+L+ +QVCAVKAPGFGDNRKNTL D+A +GG VF +E D
Sbjct: 264 LIIAEDVDGEALAACILNKLRGQVQVCAVKAPGFGDNRKNTLGDIAILSGGTVFTEELD- 322
Query: 722 YKIENVQLHDLGRA 763
K EN + LG A
Sbjct: 323 IKPENATIEQLGSA 336
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,297,743
Number of Sequences: 369166
Number of extensions: 1601064
Number of successful extensions: 5464
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5250
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)