Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_C10
(717 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41116|RL8_XENLA 60S ribosomal protein L8 386 e-107
sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8 384 e-106
sp|P62919|RL8_RAT 60S ribosomal protein L8 >gi|51702824|sp|... 383 e-106
sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8 382 e-106
sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8 381 e-105
sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8 375 e-104
sp|Q9V3G1|RL8_DROME 60S ribosomal protein L8 367 e-101
sp|P41569|RL8_AEDAL 60S ribosomal protein L8 367 e-101
sp|Q95V39|RL8_SPOFR 60S ribosomal protein L8 >gi|51701882|s... 366 e-101
sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8 365 e-101
>sp|P41116|RL8_XENLA 60S ribosomal protein L8
Length = 257
Score = 386 bits (991), Expect = e-107
Identities = 177/238 (74%), Positives = 211/238 (88%)
Frame = +2
Query: 2 VILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEF 181
VI QRKG GSVFKAH KHRKGAAKLRA D+AERNG++KGIV+DIIHDPGRGAPLAKV F
Sbjct: 4 VIRGQRKGAGSVFKAHVKHRKGAAKLRAIDFAERNGYIKGIVKDIIHDPGRGAPLAKVAF 63
Query: 182 KDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDR 361
+DPY++KK + F+AAEG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C +EEK GDR
Sbjct: 64 RDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDR 123
Query: 362 GRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAG 541
G++ARASGN A ++SHN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAG
Sbjct: 124 GKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAG 183
Query: 542 RAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAAR 715
RAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AAR
Sbjct: 184 RAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAAR 241
>sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8
Length = 257
Score = 384 bits (987), Expect = e-106
Identities = 176/238 (73%), Positives = 211/238 (88%)
Frame = +2
Query: 2 VILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEF 181
VI QRKG GSVFKAH KHRKGAAKLRA D+AER+G++KGIV+DIIHDPGRGAPLAKV F
Sbjct: 4 VIRGQRKGAGSVFKAHVKHRKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVAF 63
Query: 182 KDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDR 361
+DPY++KK + F+AAEG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C +EEK GDR
Sbjct: 64 RDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDR 123
Query: 362 GRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAG 541
G++ARASGN A ++SHN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAG
Sbjct: 124 GKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAG 183
Query: 542 RAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAAR 715
RAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AAR
Sbjct: 184 RAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAAR 241
>sp|P62919|RL8_RAT 60S ribosomal protein L8
sp|P62918|RL8_MOUSE 60S ribosomal protein L8
sp|P62917|RL8_HUMAN 60S ribosomal protein L8
Length = 257
Score = 383 bits (984), Expect = e-106
Identities = 176/238 (73%), Positives = 211/238 (88%)
Frame = +2
Query: 2 VILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEF 181
VI QRKG GSVF+AH KHRKGAA+LRA D+AER+G++KGIV+DIIHDPGRGAPLAKV F
Sbjct: 4 VIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVF 63
Query: 182 KDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDR 361
+DPY++KK + FIAAEG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C LEEK GDR
Sbjct: 64 RDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDR 123
Query: 362 GRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAG 541
G++ARASGN A ++SHN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAG
Sbjct: 124 GKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAG 183
Query: 542 RAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAAR 715
RAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AAR
Sbjct: 184 RAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAAR 241
>sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8
Length = 257
Score = 382 bits (980), Expect = e-106
Identities = 175/238 (73%), Positives = 210/238 (88%)
Frame = +2
Query: 2 VILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEF 181
VI QRKG GSVF+AH KHRKGAA+LRA D+AER+G++KGIV+DIIHDPGRGAPLAKV F
Sbjct: 4 VIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVF 63
Query: 182 KDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDR 361
+DPY++KK + FIAAEG+ TGQFVYCGKKA++N+GNVLP+ ++PEGT++C LEEK GDR
Sbjct: 64 RDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDR 123
Query: 362 GRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAG 541
G++ARASGN A ++SHN ET KTRVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAG
Sbjct: 124 GKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAG 183
Query: 542 RAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAAR 715
RAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+A R
Sbjct: 184 RAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAVR 241
>sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8
Length = 257
Score = 381 bits (978), Expect = e-105
Identities = 175/238 (73%), Positives = 210/238 (88%)
Frame = +2
Query: 2 VILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEF 181
VI QRKG GSVFKAH KHRKGAAKLR D+AER+G++KGIV+DIIHDPGRGAPLAKV F
Sbjct: 4 VIRGQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGAPLAKVMF 63
Query: 182 KDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDR 361
+DPY++KK + FIAAEG+ TGQF+YCGKKA++N+GNVLP+ ++PEGT++C LEEK GDR
Sbjct: 64 RDPYRFKKRTELFIAAEGIHTGQFIYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDR 123
Query: 362 GRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAG 541
G++ARASGN A ++SHN ET K+RVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAG
Sbjct: 124 GKLARASGNYATVISHNPETKKSRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAG 183
Query: 542 RAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAAR 715
RAYHKYKAKRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AAR
Sbjct: 184 RAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAAR 241
>sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8
Length = 257
Score = 375 bits (962), Expect = e-104
Identities = 174/238 (73%), Positives = 207/238 (86%)
Frame = +2
Query: 2 VILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEF 181
VI QRKG GSVFKAH KHRKGAAKLR D+AER+G++KGIV+DIIHDPGRG PLAKV F
Sbjct: 4 VIRAQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGTPLAKVVF 63
Query: 182 KDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDR 361
+DPY++KK + FIAAEG+ TGQFV+CGKKA++N+GNVLP+ +PEGT+IC LEEK GDR
Sbjct: 64 RDPYRFKKRTELFIAAEGIHTGQFVFCGKKAQLNIGNVLPVGVMPEGTIICCLEEKPGDR 123
Query: 362 GRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAG 541
G++ARASGN A ++SHN ET K+RVKLPSG KK++SS+ RA++G+VAGGGRI+KP+LKAG
Sbjct: 124 GKLARASGNYATVISHNPETKKSRVKLPSGAKKVISSTNRAVVGVVAGGGRIDKPILKAG 183
Query: 542 RAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAAR 715
RAYHKYK KRNCWPRVRGV MNPV+HP GGGNHQHIG PST+ R GRKVGL+AAR
Sbjct: 184 RAYHKYKVKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDVPAGRKVGLIAAR 241
>sp|Q9V3G1|RL8_DROME 60S ribosomal protein L8
Length = 256
Score = 367 bits (942), Expect = e-101
Identities = 170/238 (71%), Positives = 203/238 (85%)
Frame = +2
Query: 2 VILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEF 181
VI QRKG GSVFKAH K RKGAAKLR+ D+AER+G+++G+V+DIIHDPGRGAPLA V F
Sbjct: 4 VIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAVVHF 63
Query: 182 KDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDR 361
+DPY+YK + FIA EGM TGQFVYCG+KA + +GNV+P+ +PEGT+ICNLEEK+GDR
Sbjct: 64 RDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDR 123
Query: 362 GRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAG 541
GR+AR SGN A +++HN +T KTRVKLPSG KK++ S+ RAM+GIVAGGGRI+KP+LKAG
Sbjct: 124 GRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAG 183
Query: 542 RAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAAR 715
RAYHKYK KRN WP+VRGV MNPV+HPHGGGNHQHIG STV R T GRKVGL+AAR
Sbjct: 184 RAYHKYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAAR 241
>sp|P41569|RL8_AEDAL 60S ribosomal protein L8
Length = 261
Score = 367 bits (942), Expect = e-101
Identities = 173/238 (72%), Positives = 201/238 (84%)
Frame = +2
Query: 2 VILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEF 181
VI QRKG GSVF AHTK RKG KLRA DYAER+G+LKG V+ IIHDPGRGAPLA V F
Sbjct: 4 VIRAQRKGEGSVFTAHTKKRKGEPKLRALDYAERHGYLKGTVKQIIHDPGRGAPLAVVHF 63
Query: 182 KDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDR 361
+DPYK+ Q FIAAEGM TGQFVYCGK+A++ +GNVLPI +PEGT++CNLEEK+GDR
Sbjct: 64 RDPYKFNVRKQLFIAAEGMYTGQFVYCGKRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDR 123
Query: 362 GRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAG 541
G++AR SGN A +++HN +T +TRVKLPSG KK+L S+ RAM+GIVAGGGRI+KP+LKAG
Sbjct: 124 GKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAG 183
Query: 542 RAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAAR 715
RAY KYK KRNCWP+VRGV MNPV+HPHGGGNHQHIG STV R T PGRKVGL+AAR
Sbjct: 184 RAYRKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAAR 241
>sp|Q95V39|RL8_SPOFR 60S ribosomal protein L8
sp|Q6RYS3|RL8_MAMBR 60S ribosomal protein L8
Length = 257
Score = 366 bits (939), Expect = e-101
Identities = 171/238 (71%), Positives = 200/238 (84%)
Frame = +2
Query: 2 VILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEF 181
VI QRKG GSVF +HTK RKGA KLR+ DYAER+G++KG+V+DIIHDPGRGAPLA V F
Sbjct: 4 VIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHF 63
Query: 182 KDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDR 361
+DPYK+K + FIA EG+ TGQFVYCGKKA + VGNV+P+ ++PEGT++CNLEEK GDR
Sbjct: 64 RDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDR 123
Query: 362 GRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAG 541
GR+ARASGN A ++ HN + +TRVKLPSG KK+L SS R M+GIVAGGGRI+KP+LKAG
Sbjct: 124 GRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAG 183
Query: 542 RAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAAR 715
RAYHKYK KRNCWP VRGV MNPV+HPHGGGNHQHIG STV R T GRKVGL+AAR
Sbjct: 184 RAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAAR 241
>sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8
Length = 261
Score = 365 bits (937), Expect = e-101
Identities = 169/238 (71%), Positives = 203/238 (85%)
Frame = +2
Query: 2 VILNQRKGRGSVFKAHTKHRKGAAKLRAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEF 181
VI QRKG GSVF+AHTK RKG KLR DYAER+G+LKG+V+ II DPGRGAPLA V F
Sbjct: 4 VIRAQRKGAGSVFRAHTKKRKGQPKLRHLDYAERHGYLKGVVKQIIQDPGRGAPLAVVNF 63
Query: 182 KDPYKYKKVMQTFIAAEGMSTGQFVYCGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDR 361
+DPY+++ Q FIAAEGM TGQFVYCG++A++ +GNV+PI +PEGT++CNLEEK+GDR
Sbjct: 64 RDPYRFRLSKQLFIAAEGMYTGQFVYCGRRAQLQIGNVIPIGLMPEGTIVCNLEEKTGDR 123
Query: 362 GRIARASGNSAIIVSHNSETNKTRVKLPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAG 541
G++AR SGN A +++HN +T +TRVKLPSG KK+L S+ RAM+GIVAGGGRI+KP+LKAG
Sbjct: 124 GKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAG 183
Query: 542 RAYHKYKAKRNCWPRVRGVCMNPVDHPHGGGNHQHIGTPSTVSRHTVPGRKVGLVAAR 715
RAYHKYK KRNCWP+VRGV MNPV+HPHGGGNHQHIG STV R T PGRKVGL+AAR
Sbjct: 184 RAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLIAAR 241
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,196,532
Number of Sequences: 369166
Number of extensions: 1735339
Number of successful extensions: 5062
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4678
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6365071885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)