Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_C06
(856 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 474 e-133
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 473 e-133
sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin) 473 e-133
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 472 e-133
sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin cla... 471 e-132
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 470 e-132
sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain 469 e-132
sp|Q9YHC3|TBB1_GADMO Tubulin beta-1 chain (Beta-1 tubulin) 469 e-132
sp|P04350|TBB4_HUMAN Tubulin beta-4 chain (Tubulin 5 beta) 468 e-132
sp|P02554|TBB_PIG Tubulin beta chain 468 e-132
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 474 bits (1220), Expect = e-133
Identities = 230/261 (88%), Positives = 237/261 (90%)
Frame = +2
Query: 2 VHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAV 181
VHLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GGKYVPRAV
Sbjct: 5 VHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAV 64
Query: 182 LVDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 361
LVDLEPGTMDSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA
Sbjct: 65 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 124
Query: 362 ESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 541
ESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVVEPYN
Sbjct: 125 ESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 184
Query: 542 ATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 721
ATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG
Sbjct: 185 ATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 244
Query: 722 QLNADLRKLAVNMGSIPPIAF 784
QLNADLRKLAVNM P + F
Sbjct: 245 QLNADLRKLAVNMVPFPRLHF 265
Score = 68.9 bits (167), Expect = 2e-11
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 762 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 854
VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE
Sbjct: 258 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 288
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 473 bits (1218), Expect = e-133
Identities = 229/261 (87%), Positives = 237/261 (90%)
Frame = +2
Query: 2 VHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAV 181
VH+QAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GGKYVPRAV
Sbjct: 5 VHMQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAV 64
Query: 182 LVDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 361
LVDLEPGTMDSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA
Sbjct: 65 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 124
Query: 362 ESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 541
ESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVVEPYN
Sbjct: 125 ESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 184
Query: 542 ATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 721
ATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG
Sbjct: 185 ATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 244
Query: 722 QLNADLRKLAVNMGSIPPIAF 784
QLNADLRKLAVNM P + F
Sbjct: 245 QLNADLRKLAVNMVPFPRLHF 265
Score = 68.9 bits (167), Expect = 2e-11
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 762 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 854
VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE
Sbjct: 258 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 288
>sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin)
Length = 446
Score = 473 bits (1218), Expect = e-133
Identities = 230/261 (88%), Positives = 236/261 (90%)
Frame = +2
Query: 2 VHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAV 181
VHLQAGQCGNQIGSKFWEVISDEHGIDPTG+YHGDSDLQL+RINVYYNEASGGKYVPRAV
Sbjct: 5 VHLQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGDSDLQLDRINVYYNEASGGKYVPRAV 64
Query: 182 LVDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 361
LVDLEPGTMDSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA
Sbjct: 65 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 124
Query: 362 ESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 541
E CDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVVEPYN
Sbjct: 125 EGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 184
Query: 542 ATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 721
ATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG
Sbjct: 185 ATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 244
Query: 722 QLNADLRKLAVNMGSIPPIAF 784
QLNADLRKLAVNM P + F
Sbjct: 245 QLNADLRKLAVNMVPFPRLHF 265
Score = 64.7 bits (156), Expect = 3e-10
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +3
Query: 762 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 854
VPFPRLHFF+PGFAPLTSRG QQYR+LTVPE
Sbjct: 258 VPFPRLHFFIPGFAPLTSRGGQQYRSLTVPE 288
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 472 bits (1215), Expect = e-133
Identities = 229/261 (87%), Positives = 236/261 (90%)
Frame = +2
Query: 2 VHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAV 181
VHLQAGQCGNQIG+KFWEVISDEHGIDPTG YHGDSDLQLERINVYYNEA+GGKYVPRAV
Sbjct: 5 VHLQAGQCGNQIGAKFWEVISDEHGIDPTGAYHGDSDLQLERINVYYNEATGGKYVPRAV 64
Query: 182 LVDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 361
LVDLEPGTMDSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA
Sbjct: 65 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 124
Query: 362 ESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 541
ESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVVEPYN
Sbjct: 125 ESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 184
Query: 542 ATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 721
ATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG
Sbjct: 185 ATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 244
Query: 722 QLNADLRKLAVNMGSIPPIAF 784
QLNADLRKLAVNM P + F
Sbjct: 245 QLNADLRKLAVNMVPFPRLHF 265
Score = 68.9 bits (167), Expect = 2e-11
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 762 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 854
VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE
Sbjct: 258 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 288
>sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin class-IV)
Length = 445
Score = 471 bits (1212), Expect = e-132
Identities = 229/261 (87%), Positives = 236/261 (90%)
Frame = +2
Query: 2 VHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAV 181
VHLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GGKYVPRAV
Sbjct: 5 VHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAV 64
Query: 182 LVDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 361
LVDLEPGTMDSVR+GPF Q+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA
Sbjct: 65 LVDLEPGTMDSVRSGPFRQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 124
Query: 362 ESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 541
ESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVVEPYN
Sbjct: 125 ESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 184
Query: 542 ATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 721
ATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG
Sbjct: 185 ATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 244
Query: 722 QLNADLRKLAVNMGSIPPIAF 784
QLNADLRKLAVNM P + F
Sbjct: 245 QLNADLRKLAVNMVPFPRLHF 265
Score = 67.8 bits (164), Expect = 4e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 762 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 854
VPFPRLHFFMPGFAPLTSRGSQQYRALTVP+
Sbjct: 258 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPD 288
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 470 bits (1209), Expect = e-132
Identities = 226/261 (86%), Positives = 237/261 (90%)
Frame = +2
Query: 2 VHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAV 181
VH+QAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEA+GGKYVPRA+
Sbjct: 5 VHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAI 64
Query: 182 LVDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 361
LVDLEPGTMDSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA
Sbjct: 65 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 124
Query: 362 ESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 541
ESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVVEPYN
Sbjct: 125 ESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 184
Query: 542 ATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 721
ATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG
Sbjct: 185 ATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 244
Query: 722 QLNADLRKLAVNMGSIPPIAF 784
QLNADLRKLAVNM P + F
Sbjct: 245 QLNADLRKLAVNMVPFPRLHF 265
Score = 68.9 bits (167), Expect = 2e-11
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 762 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 854
VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE
Sbjct: 258 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 288
>sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain
Length = 444
Score = 469 bits (1208), Expect = e-132
Identities = 227/261 (86%), Positives = 236/261 (90%)
Frame = +2
Query: 2 VHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAV 181
VHLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GG YVPRAV
Sbjct: 5 VHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAV 64
Query: 182 LVDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 361
LVDLEPGTMDSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLDVVRKEA
Sbjct: 65 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEA 124
Query: 362 ESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 541
ESCDCLQGFQ KIREE+PDRIMNTFSVVPSPKVSDTVVEPYN
Sbjct: 125 ESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYN 184
Query: 542 ATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 721
ATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG
Sbjct: 185 ATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 244
Query: 722 QLNADLRKLAVNMGSIPPIAF 784
QLNADLRKLAVNM P + F
Sbjct: 245 QLNADLRKLAVNMVPFPRLHF 265
Score = 66.6 bits (161), Expect = 8e-11
Identities = 30/31 (96%), Positives = 30/31 (96%)
Frame = +3
Query: 762 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 854
VPFPRLHFFMPG APLTSRGSQQYRALTVPE
Sbjct: 258 VPFPRLHFFMPGLAPLTSRGSQQYRALTVPE 288
>sp|Q9YHC3|TBB1_GADMO Tubulin beta-1 chain (Beta-1 tubulin)
Length = 445
Score = 469 bits (1207), Expect = e-132
Identities = 228/261 (87%), Positives = 236/261 (90%)
Frame = +2
Query: 2 VHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAV 181
VHLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQL+RINVYYNEASGGKYVPRAV
Sbjct: 5 VHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRINVYYNEASGGKYVPRAV 64
Query: 182 LVDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 361
LVDLEPGTMDSVR+G FGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA
Sbjct: 65 LVDLEPGTMDSVRSGAFGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 124
Query: 362 ESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 541
ESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVVEPYN
Sbjct: 125 ESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 184
Query: 542 ATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 721
ATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTP+YGDLNHLVSATMSGVTTCLRFPG
Sbjct: 185 ATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPSYGDLNHLVSATMSGVTTCLRFPG 244
Query: 722 QLNADLRKLAVNMGSIPPIAF 784
QLNADLRKLAVNM P + F
Sbjct: 245 QLNADLRKLAVNMVPFPRLHF 265
Score = 67.8 bits (164), Expect = 4e-11
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 762 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 854
VPFPRLHFFMPGFAPLTSRGSQQYR+LTVPE
Sbjct: 258 VPFPRLHFFMPGFAPLTSRGSQQYRSLTVPE 288
>sp|P04350|TBB4_HUMAN Tubulin beta-4 chain (Tubulin 5 beta)
Length = 444
Score = 468 bits (1205), Expect = e-132
Identities = 226/261 (86%), Positives = 236/261 (90%)
Frame = +2
Query: 2 VHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAV 181
VHLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GG YVPRAV
Sbjct: 5 VHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAV 64
Query: 182 LVDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 361
LVDLEPGTMDSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLDVVRKEA
Sbjct: 65 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEA 124
Query: 362 ESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 541
ESCDCLQGFQ K+REE+PDRIMNTFSVVPSPKVSDTVVEPYN
Sbjct: 125 ESCDCLQGFQLTHSLGGGTGSGMGTLLISKMREEFPDRIMNTFSVVPSPKVSDTVVEPYN 184
Query: 542 ATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 721
ATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG
Sbjct: 185 ATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 244
Query: 722 QLNADLRKLAVNMGSIPPIAF 784
QLNADLRKLAVNM P + F
Sbjct: 245 QLNADLRKLAVNMVPFPRLHF 265
Score = 65.1 bits (157), Expect = 2e-10
Identities = 29/31 (93%), Positives = 29/31 (93%)
Frame = +3
Query: 762 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 854
VPFPRLHFFMP FAPLTSRGSQQYR LTVPE
Sbjct: 258 VPFPRLHFFMPAFAPLTSRGSQQYRGLTVPE 288
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 468 bits (1204), Expect = e-132
Identities = 225/261 (86%), Positives = 236/261 (90%)
Frame = +2
Query: 2 VHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAV 181
VH+QAGQCGNQIG+KFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G KYVPRA+
Sbjct: 5 VHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAI 64
Query: 182 LVDLEPGTMDSVRAGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEA 361
LVDLEPGTMDSVR+GPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKE+
Sbjct: 65 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKES 124
Query: 362 ESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 541
ESCDCLQGFQ KIREEYPDRIMNTFSVVPSPKVSDTVVEPYN
Sbjct: 125 ESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYN 184
Query: 542 ATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 721
ATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG
Sbjct: 185 ATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPG 244
Query: 722 QLNADLRKLAVNMGSIPPIAF 784
QLNADLRKLAVNM P + F
Sbjct: 245 QLNADLRKLAVNMVPFPRLHF 265
Score = 68.9 bits (167), Expect = 2e-11
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3
Query: 762 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 854
VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE
Sbjct: 258 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPE 288
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,537,754
Number of Sequences: 369166
Number of extensions: 2090878
Number of successful extensions: 6449
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5890
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)