Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_C04
(846 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96BY7|CN103_HUMAN Protein C14orf103 117 4e-26
sp|Q80XK6|CN103_MOUSE Protein C14orf103 homolog 117 5e-26
sp|Q5KMS0|ATG2_CRYNE Autophagy-related protein 2 49 1e-05
sp|Q07878|VPS13_YEAST Vacuolar protein sorting-associated p... 34 0.45
sp|Q8NN43|NDK_CORGL Nucleoside diphosphate kinase (NDK) (ND... 32 1.7
sp|Q8FN70|NDK_COREF Nucleoside diphosphate kinase (NDK) (ND... 32 1.7
sp|P34492|YMQ1_CAEEL Putative NipSnap protein K02D10.1 31 3.8
sp|O85501|NDK_MYCSM Nucleoside diphosphate kinase (NDK) (ND... 31 3.8
sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 ... 31 4.9
sp|Q601U7|TRUB_MYCH2 tRNA pseudouridine synthase B (tRNA ps... 31 4.9
>sp|Q96BY7|CN103_HUMAN Protein C14orf103
Length = 909
Score = 117 bits (293), Expect = 4e-26
Identities = 69/265 (26%), Positives = 125/265 (47%), Gaps = 12/265 (4%)
Frame = +1
Query: 4 FSLYPDIYVRLDYTGTRLDFTQGAIKGFXXXXXXXXXXXXXXKSKQYLEGITGFDVLLQI 183
F ++ +RLDY G + QG + G K Y G+ G D L
Sbjct: 642 FRFTSEVPIRLDYHGKHVSMDQGTLAGILIGLAQLNCSELKLKRLSYRHGLLGVDKLFSY 701
Query: 184 -LTKEIYDEFMAQINKILTKVGPISEISEMLSGIYDLFSLPYQYYHNERGLIEGIKLGTR 360
+T+ + D Q+ IL VGP+ + +++ G+ DL LP + Y + ++ G + G
Sbjct: 702 AITEWLNDIKKNQLPGILGGVGPMHSLVQLVQGLKDLVWLPIEQYRKDGRIVRGFQRGAA 761
Query: 361 XXXXXXXXXXXXXXXKGLRVFQKMAETTYDLVSPSS-SVHDDESQQLAR--------DLR 513
+ ++ Q AET YD+VSP + S+ ++++ DLR
Sbjct: 762 SSGTSTAMAALELTNRMVQTIQAAAETAYDMVSPGTLSIEPKKTKRFPHHRLAHQPVDLR 821
Query: 514 EGVTNAAYGVRRRFNNTAHDMQ--LALQRPDRPIFGRMGDFIRQVPPVFASPIVATCEAS 687
EGV A V+ +TA + A + R + G +G+ +RQ+PP P++ EA+
Sbjct: 822 EGVAKAYSVVKEGITDTAQTIYETAAREHESRGVTGAVGEVLRQIPPAVVKPLIVATEAT 881
Query: 688 NQLIDGLRYQLKPEMKIEDEKKWKH 762
+ ++ G+R Q++P+++ ++ +KW+H
Sbjct: 882 SNVLGGMRNQIRPDVRQDESQKWRH 906
>sp|Q80XK6|CN103_MOUSE Protein C14orf103 homolog
Length = 908
Score = 117 bits (292), Expect = 5e-26
Identities = 70/265 (26%), Positives = 124/265 (46%), Gaps = 12/265 (4%)
Frame = +1
Query: 4 FSLYPDIYVRLDYTGTRLDFTQGAIKGFXXXXXXXXXXXXXXKSKQYLEGITGFDVLLQI 183
F ++ +RLDY G + QG + G K Y G+ G D L
Sbjct: 641 FRFTAEVPIRLDYHGKHVSMDQGTLAGILIGLAQLNCSELKLKRLFYRHGLLGIDKLFSY 700
Query: 184 LTKE-IYDEFMAQINKILTKVGPISEISEMLSGIYDLFSLPYQYYHNERGLIEGIKLGTR 360
E + D Q+ IL VGP+ + +++ G+ DL LP + Y + ++ G + G
Sbjct: 701 AISEWLSDIKKNQLPGILGGVGPMHSLVQLVQGLKDLVWLPIEQYRKDGRIVRGFQRGAA 760
Query: 361 XXXXXXXXXXXXXXXKGLRVFQKMAETTYDLVSPSS-SVHDDESQQLAR--------DLR 513
+ ++ Q AET YD+VSPS+ S+ ++++ DLR
Sbjct: 761 SFGTSTAMAALELTNRMVQTIQAAAETAYDMVSPSTLSIEPKKAKRFPHHRLAHQPVDLR 820
Query: 514 EGVTNAAYGVRRRFNNTAHDMQ--LALQRPDRPIFGRMGDFIRQVPPVFASPIVATCEAS 687
EGV A V+ +TA + A + R + G +G+ +RQ+PP P++ EA+
Sbjct: 821 EGVAKAYSVVKEGITDTAQTIYETAAREHESRGVTGAVGEVLRQIPPAVVRPLIVATEAT 880
Query: 688 NQLIDGLRYQLKPEMKIEDEKKWKH 762
+ ++ G+R Q++P+++ ++ +KW+H
Sbjct: 881 SNVLGGMRNQIRPDVRQDESQKWRH 905
>sp|Q5KMS0|ATG2_CRYNE Autophagy-related protein 2
Length = 1935
Score = 49.3 bits (116), Expect = 1e-05
Identities = 59/244 (24%), Positives = 97/244 (39%), Gaps = 39/244 (15%)
Frame = +1
Query: 145 LEGITGFDVLLQILTKEIYDEFMA-QINKILTKVGPISEISEMLSGIYDLFSLPYQYYHN 321
L GITG + L L + A Q+ +++ V PI + + SG+ DL LP + Y
Sbjct: 1696 LSGITGLERLGTTLQDLWTPDVKANQLADVISGVSPIRSMVNVGSGVADLILLPIEQYRK 1755
Query: 322 ERGLIEGIKLGTRXXXXXXXXXXXXXXXK---GLRVFQKMAETTY------DLVSP---- 462
+ + +G++ GT + G +V + AE D+V
Sbjct: 1756 DGRIAKGVQRGTNSFVKSTALEVMKLGARLATGTQVILERAEGVLGGKSGEDVVGQVQGL 1815
Query: 463 -------------SSSVHDDESQQLAR------DLREGVTNAAYGVRRRFNNTAHDMQLA 585
S +DE + ++R ++EGV A + + N A Q
Sbjct: 1816 STNAFGVDSGMLEGGSSSEDEQEAISRYADQPESMKEGVQAAYKSLSKNVNAAA---QTI 1872
Query: 586 LQRPDRPIFGRMGD------FIRQVPPVFASPIVATCEASNQLIDGLRYQLKPEMKIEDE 747
L P ++ R GD IR VP P++ T EA ++ + G+R L P + E +
Sbjct: 1873 LAVP-MEVYERSGDDGPLKAVIRAVPIAVLKPMIGTTEAVSKTLLGMRNSLDPSARRELD 1931
Query: 748 KKWK 759
K+K
Sbjct: 1932 DKYK 1935
>sp|Q07878|VPS13_YEAST Vacuolar protein sorting-associated protein VPS13 (Suppression of the
onset of impotence protein 1)
Length = 3144
Score = 34.3 bits (77), Expect = 0.45
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = +1
Query: 169 VLLQILTKEIYDEFMAQINKILTKV----GPISEISEMLSGIYDLFSLPYQ-YYHNERGL 333
+L+ + + +F+ QI+KIL P+ + + SG++DLF PYQ Y N+R
Sbjct: 2814 ILMDHIERHYTTQFVYQIHKILGSADCFGNPVGLFNTISSGVWDLFYEPYQGYMMNDRPQ 2873
Query: 334 IEGIKL 351
GI L
Sbjct: 2874 EIGIHL 2879
>sp|Q8NN43|NDK_CORGL Nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P
kinase)
Length = 136
Score = 32.3 bits (72), Expect = 1.7
Identities = 25/94 (26%), Positives = 41/94 (43%)
Frame = +1
Query: 430 MAETTYDLVSPSSSVHDDESQQLARDLREGVTNAAYGVRRRFNNTAHDMQLALQRPDRPI 609
M E T L+ P + + +AR R+G+ AA +R TA + D+P
Sbjct: 1 MTERTLILIKPDGVTNGHVGEIIARIERKGLKLAALDLRVADRETAEKHYE--EHADKPF 58
Query: 610 FGRMGDFIRQVPPVFASPIVATCEASNQLIDGLR 711
FG + +FI ++P++A + ID R
Sbjct: 59 FGELVEFIT------SAPLIAGIVEGERAIDAWR 86
>sp|Q8FN70|NDK_COREF Nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P
kinase)
Length = 136
Score = 32.3 bits (72), Expect = 1.7
Identities = 25/94 (26%), Positives = 41/94 (43%)
Frame = +1
Query: 430 MAETTYDLVSPSSSVHDDESQQLARDLREGVTNAAYGVRRRFNNTAHDMQLALQRPDRPI 609
M E T L+ P + + +AR R+G+ AA +R TA + D+P
Sbjct: 1 MTERTLILIKPDGVTNGHVGEIIARIERKGLKLAALDLRVADRETAEKHYE--EHADKPF 58
Query: 610 FGRMGDFIRQVPPVFASPIVATCEASNQLIDGLR 711
FG + +FI ++P++A + ID R
Sbjct: 59 FGELVEFIT------SAPLIAGIVEGERAIDAWR 86
>sp|P34492|YMQ1_CAEEL Putative NipSnap protein K02D10.1
Length = 526
Score = 31.2 bits (69), Expect = 3.8
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 696 KLIGSFTCCYNRTSEYWRHL-SYKVAHATKDWSIRSLQGQLHIMRSIIESATNTISSIC 523
+L+GS+TC Y RT + HL + + D SI LH S I +A N ++ +C
Sbjct: 348 ELVGSWTCAYGRTRDQAIHLWRHNKGYEDVDSSI-----SLHGKDSGIRAADNDVAKLC 401
>sp|O85501|NDK_MYCSM Nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P
kinase)
Length = 139
Score = 31.2 bits (69), Expect = 3.8
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +1
Query: 430 MAETTYDLVSPSSSVHDDESQQLARDLREGVTNAAYGVRRRFNNTAHDMQLALQRPDRPI 609
M E T L+ P + L+R R+G+T AA ++ ++ A Q + D+P
Sbjct: 1 MTERTLVLIKPDGVKRQLVGEILSRIERKGLTLAALELKNVSDDLAR--QHYAEHADKPF 58
Query: 610 FGRMGDFIRQVPPVFA 657
FG + +FI P V A
Sbjct: 59 FGSLLEFITSGPLVAA 74
>sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 (NAP-1 related protein) (hNRP)
Length = 391
Score = 30.8 bits (68), Expect = 4.9
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +1
Query: 541 VRRRFNNTAHDMQLALQRPDRPIFGRMGDFIRQVPPVFASPIVATCEASNQLIDGLRYQL 720
+ +F HD++ +P+F + + I + P CE D + +L
Sbjct: 91 IEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAI----YEPTEEECEWKPDEEDEISEEL 146
Query: 721 KPEMKIEDEKK 753
K + KIEDEKK
Sbjct: 147 KEKAKIEDEKK 157
>sp|Q601U7|TRUB_MYCH2 tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (tRNA-uridine isomerase) (tRNA
pseudouridylate synthase)
Length = 327
Score = 30.8 bits (68), Expect = 4.9
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +1
Query: 535 YGVRRRFNNTAHDMQLALQRPDRPIFGRMGDFIRQVPPVFASPIVATCEASNQLIDGLRY 714
YGV + T +++ AL R + + +QVPPVF+S V+ A + G +
Sbjct: 131 YGVEQPIKVTKDNLEQALNR--------LSESQKQVPPVFSSKKVSGKSAYHYARQGKQI 182
Query: 715 QLKP 726
+LKP
Sbjct: 183 ELKP 186
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,807,773
Number of Sequences: 369166
Number of extensions: 1905449
Number of successful extensions: 4773
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4753
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)