Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_B22
(551 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P14586|HRP3_PLAFS Histidine-rich protein 34 0.21
sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6) 32 0.79
sp|P47154|STE24_YEAST CAAX prenyl protease 1 (Prenyl protei... 32 1.4
sp|P06426|VE5_HPV33 Probable protein E5 31 1.8
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor 31 2.3
sp|P38354|YB8A_YEAST Hypothetical protein YBR285W 30 3.9
sp|Q5TJF0|VPS52_CANFA Vacuolar protein sorting protein 52 29 6.7
sp|P15989|CO6A3_CHICK Collagen alpha 3(VI) chain precursor 29 6.7
>sp|P14586|HRP3_PLAFS Histidine-rich protein
Length = 82
Score = 34.3 bits (77), Expect = 0.21
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -2
Query: 94 NHRLGHVFYLHHTL---LYHPFYHHLRNLHDH 8
NHR H F+ HH L LYH +HH + H H
Sbjct: 3 NHRYHHYFHRHHHLNHHLYHRHHHHRHHHHRH 34
>sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6)
Length = 229
Score = 32.3 bits (72), Expect = 0.79
Identities = 23/83 (27%), Positives = 35/83 (42%)
Frame = +1
Query: 178 LYPILNQMMEYY*KCFYVFRLLFNKFVYCFLKFICCSLFLFSILGSMIISTFKQILFKNF 357
LY + + Y C + F++CFL C FLF+ L ++ +F + F F
Sbjct: 72 LYYCITYLNLYLLFCIVFLLYIAFLFLFCFL----CDFFLFNNL--LVGDSFMDVFFIRF 125
Query: 358 LIWFNLIG*LLTSCYDSIFLLLC 426
L+ F LL C + L C
Sbjct: 126 LLCFLECFSLLCRCLSTFLRLFC 148
>sp|P47154|STE24_YEAST CAAX prenyl protease 1 (Prenyl protein-specific endoprotease 1)
(PPSEP 1) (A-factor-converting enzyme)
Length = 453
Score = 31.6 bits (70), Expect = 1.4
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 226 YVFRLLFNKFVYCFLKFICCSLFLFSILGSMIISTFKQILFKNF 357
Y+F +F+KF FL +I LF+ IL II F +F F
Sbjct: 181 YLFLKIFDKFPTDFLWYIMVFLFVVQILAMTIIPVFIMPMFNKF 224
>sp|P06426|VE5_HPV33 Probable protein E5
Length = 75
Score = 31.2 bits (69), Expect = 1.8
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 253 FVYCFLKFICCSLFLFSILGSMIISTFKQILFKNFLIW 366
FV CF+ F+C SL L ++ + IST+ +L L+W
Sbjct: 5 FVLCFILFLCLSLLLRPLI--LSISTYAWLLVLVLLLW 40
>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor
Length = 351
Score = 30.8 bits (68), Expect = 2.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 121 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDH 8
H H L Y +H H + HH +H +HH + H H
Sbjct: 162 HHHHLGYHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHH 199
Score = 29.3 bits (64), Expect = 6.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 121 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDH 8
H H + +H GH + HH +H +HH + H H
Sbjct: 220 HHHGHHHHHHHHHGHHHHHHHHHGHHHHHHHHHDAHHH 257
>sp|P38354|YB8A_YEAST Hypothetical protein YBR285W
Length = 144
Score = 30.0 bits (66), Expect = 3.9
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -1
Query: 392 VNNHPIRLNQIKKFLNKICLNVEIIIEPKMENKNSEQHIN 273
VNNH I LN++KK L + E K++N NS +H N
Sbjct: 79 VNNHCIDLNELKKGL--------VANEHKLDNDNSTRHQN 110
>sp|Q5TJF0|VPS52_CANFA Vacuolar protein sorting protein 52
Length = 723
Score = 29.3 bits (64), Expect = 6.7
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Frame = +1
Query: 226 YVFRLLFNKFVYCFLKFIC------CSLFLFSILGSMIISTFKQILFKNFLIWFNLIG*L 387
Y F LF Y L C C F+ S GS F ++ + + +
Sbjct: 376 YPFEALFRSQHYALLDNSCREYLFICEFFVVS--GSAAHDLFHAVMGRTLGMTLKHLESY 433
Query: 388 LTSCYDSIFLLLC 426
LT CYD+I + LC
Sbjct: 434 LTDCYDAIAVFLC 446
>sp|P15989|CO6A3_CHICK Collagen alpha 3(VI) chain precursor
Length = 3137
Score = 29.3 bits (64), Expect = 6.7
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = -1
Query: 380 PIRLNQIKKFLNKICLNVEIIIEPKMENKNS 288
P++ N++KK+++ + N+EI EPK+ ++
Sbjct: 2638 PLQFNEMKKYISHLVSNMEISSEPKISQHHA 2668
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,454,304
Number of Sequences: 369166
Number of extensions: 948308
Number of successful extensions: 2231
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2196
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3882260660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)