Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_B12-2
(209 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin cla... 137 8e-33
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 137 8e-33
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 136 1e-32
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 135 3e-32
sp|P04350|TBB4_HUMAN Tubulin beta-4 chain (Tubulin 5 beta) 135 3e-32
sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain 135 3e-32
sp|Q9NFZ6|TBB2_ECHMU Tubulin beta-2 chain (Beta-tubulin 2) 134 5e-32
sp|Q9YHC3|TBB1_GADMO Tubulin beta-1 chain (Beta-1 tubulin) 134 5e-32
sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin) 134 6e-32
sp|P11857|TBB_STYLE Tubulin beta chain (Beta tubulin) 134 8e-32
>sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin class-IV)
Length = 445
Score = 137 bits (345), Expect = 8e-33
Identities = 63/64 (98%), Positives = 64/64 (100%)
Frame = +1
Query: 16 MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 195
MREIVHLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 196 PRAV 207
PRAV
Sbjct: 61 PRAV 64
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 137 bits (345), Expect = 8e-33
Identities = 63/64 (98%), Positives = 64/64 (100%)
Frame = +1
Query: 16 MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 195
MREIVHLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 196 PRAV 207
PRAV
Sbjct: 61 PRAV 64
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 136 bits (343), Expect = 1e-32
Identities = 62/64 (96%), Positives = 64/64 (100%)
Frame = +1
Query: 16 MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 195
MREIVH+QAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV
Sbjct: 1 MREIVHMQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 196 PRAV 207
PRAV
Sbjct: 61 PRAV 64
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 135 bits (340), Expect = 3e-32
Identities = 62/64 (96%), Positives = 63/64 (98%)
Frame = +1
Query: 16 MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 195
MREIVHLQAGQCGNQIG+KFWEVISDEHGIDPTG YHGDSDLQLERINVYYNEATGGKYV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGAYHGDSDLQLERINVYYNEATGGKYV 60
Query: 196 PRAV 207
PRAV
Sbjct: 61 PRAV 64
>sp|P04350|TBB4_HUMAN Tubulin beta-4 chain (Tubulin 5 beta)
Length = 444
Score = 135 bits (340), Expect = 3e-32
Identities = 62/64 (96%), Positives = 63/64 (98%)
Frame = +1
Query: 16 MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 195
MREIVHLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGG YV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV 60
Query: 196 PRAV 207
PRAV
Sbjct: 61 PRAV 64
>sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain
Length = 444
Score = 135 bits (340), Expect = 3e-32
Identities = 62/64 (96%), Positives = 63/64 (98%)
Frame = +1
Query: 16 MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 195
MREIVHLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGG YV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV 60
Query: 196 PRAV 207
PRAV
Sbjct: 61 PRAV 64
>sp|Q9NFZ6|TBB2_ECHMU Tubulin beta-2 chain (Beta-tubulin 2)
Length = 445
Score = 134 bits (338), Expect = 5e-32
Identities = 60/64 (93%), Positives = 64/64 (100%)
Frame = +1
Query: 16 MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 195
MREIVH+QAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYV 60
Query: 196 PRAV 207
PRA+
Sbjct: 61 PRAI 64
>sp|Q9YHC3|TBB1_GADMO Tubulin beta-1 chain (Beta-1 tubulin)
Length = 445
Score = 134 bits (338), Expect = 5e-32
Identities = 61/64 (95%), Positives = 64/64 (100%)
Frame = +1
Query: 16 MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 195
MREIVHLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQL+RINVYYNEA+GGKYV
Sbjct: 1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRINVYYNEASGGKYV 60
Query: 196 PRAV 207
PRAV
Sbjct: 61 PRAV 64
>sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin)
Length = 446
Score = 134 bits (337), Expect = 6e-32
Identities = 61/64 (95%), Positives = 64/64 (100%)
Frame = +1
Query: 16 MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 195
MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTG+YHGDSDLQL+RINVYYNEA+GGKYV
Sbjct: 1 MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGDSDLQLDRINVYYNEASGGKYV 60
Query: 196 PRAV 207
PRAV
Sbjct: 61 PRAV 64
>sp|P11857|TBB_STYLE Tubulin beta chain (Beta tubulin)
Length = 442
Score = 134 bits (336), Expect = 8e-32
Identities = 60/64 (93%), Positives = 63/64 (98%)
Frame = +1
Query: 16 MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 195
MREIVH+Q GQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGG+YV
Sbjct: 1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYV 60
Query: 196 PRAV 207
PRAV
Sbjct: 61 PRAV 64
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,761,736
Number of Sequences: 369166
Number of extensions: 360978
Number of successful extensions: 1377
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 68,354,980
effective HSP length: 41
effective length of database: 60,780,845
effective search space used: 1701863660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)