Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_B12-1
(479 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62264|RS14_MOUSE 40S ribosomal protein S14 >gi|50403752... 196 2e-50
sp|P13471|RS14_RAT 40S ribosomal protein S14 196 2e-50
sp|P42036|RS143_ARATH 40S ribosomal protein S14-3 194 9e-50
sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2 194 1e-49
sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1 192 3e-49
sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2) 189 4e-48
sp|Q08699|RS14_PODCA 40S ribosomal protein S14 188 6e-48
sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1) 187 8e-48
sp|P48150|RS14_CAEEL 40S ribosomal protein S14 187 8e-48
sp|O22584|RS14_LUPLU 40S ribosomal protein S14 187 8e-48
>sp|P62264|RS14_MOUSE 40S ribosomal protein S14
sp|P62263|RS14_HUMAN 40S ribosomal protein S14
sp|P62265|RS14_CRIGR 40S ribosomal protein S14
Length = 151
Score = 196 bits (499), Expect = 2e-50
Identities = 98/137 (71%), Positives = 113/137 (82%), Gaps = 1/137 (0%)
Frame = +2
Query: 11 RKNVKKVEEQV-SLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKVK 187
RK +K EEQV SLGP+V EGE VFG+CHIFASFNDTFVHVTD++G ETI RVTGGMKVK
Sbjct: 4 RKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVK 63
Query: 188 ADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSG 367
ADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG +++T SG
Sbjct: 64 ADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSG 123
Query: 368 MKIGRIEDVTPIPHDTT 418
MKIGRIEDVTPIP D+T
Sbjct: 124 MKIGRIEDVTPIPSDST 140
>sp|P13471|RS14_RAT 40S ribosomal protein S14
Length = 151
Score = 196 bits (498), Expect = 2e-50
Identities = 95/139 (68%), Positives = 113/139 (81%)
Frame = +2
Query: 2 ASKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMK 181
A ++ KK E+ +SLGP+V EGE VFG+CHIFASFNDTFVHVTD++G ETI RVTGGMK
Sbjct: 2 APRKGKDKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMK 61
Query: 182 VKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXX 361
VKADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG +++T
Sbjct: 62 VKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALAR 121
Query: 362 SGMKIGRIEDVTPIPHDTT 418
SGMKIGRIEDVTPIP D+T
Sbjct: 122 SGMKIGRIEDVTPIPSDST 140
>sp|P42036|RS143_ARATH 40S ribosomal protein S14-3
Length = 150
Score = 194 bits (493), Expect = 9e-50
Identities = 94/138 (68%), Positives = 112/138 (81%)
Frame = +2
Query: 5 SKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKV 184
SKRK + E V+LGP V EGE+VFG+ H+FASFNDTF+HVTD++G ET+VR+TGGMKV
Sbjct: 2 SKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKV 61
Query: 185 KADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXS 364
KADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T S
Sbjct: 62 KADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARS 121
Query: 365 GMKIGRIEDVTPIPHDTT 418
GMKIGRIEDVTPIP D+T
Sbjct: 122 GMKIGRIEDVTPIPTDST 139
>sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2
Length = 150
Score = 194 bits (492), Expect = 1e-49
Identities = 95/138 (68%), Positives = 112/138 (81%)
Frame = +2
Query: 5 SKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKV 184
SKRK + E V+LGP V EGE+VFG+ HIFASFNDTF+HVTD++G ET+VR+TGGMKV
Sbjct: 2 SKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61
Query: 185 KADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXS 364
KADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T S
Sbjct: 62 KADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARS 121
Query: 365 GMKIGRIEDVTPIPHDTT 418
GMKIGRIEDVTPIP D+T
Sbjct: 122 GMKIGRIEDVTPIPTDST 139
>sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1
Length = 150
Score = 192 bits (488), Expect = 3e-49
Identities = 94/138 (68%), Positives = 112/138 (81%)
Frame = +2
Query: 5 SKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKV 184
SKRK + + V+LGP V EGE+VFG+ HIFASFNDTF+HVTD++G ET+VR+TGGMKV
Sbjct: 2 SKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61
Query: 185 KADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXS 364
KADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T S
Sbjct: 62 KADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARS 121
Query: 365 GMKIGRIEDVTPIPHDTT 418
GMKIGRIEDVTPIP D+T
Sbjct: 122 GMKIGRIEDVTPIPTDST 139
>sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2)
Length = 150
Score = 189 bits (479), Expect = 4e-48
Identities = 90/138 (65%), Positives = 111/138 (80%)
Frame = +2
Query: 5 SKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKV 184
S RK ++ +E+ LGP V EGE VFG+ HIFASFNDTF+HVTD++G ET+VR+TGGMKV
Sbjct: 2 SGRKKTREPKEENVLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61
Query: 185 KADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXS 364
KADRDESSPYAAMLA+QDVA+RCK+LGITA+H+++RATGG K++T S
Sbjct: 62 KADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121
Query: 365 GMKIGRIEDVTPIPHDTT 418
GMKIGRIEDVTP+P D+T
Sbjct: 122 GMKIGRIEDVTPVPTDST 139
>sp|Q08699|RS14_PODCA 40S ribosomal protein S14
Length = 151
Score = 188 bits (477), Expect = 6e-48
Identities = 92/139 (66%), Positives = 109/139 (78%)
Frame = +2
Query: 2 ASKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMK 181
A ++ K E+ +SLGP+V +GE VFG+ HIFASFNDTFVHVTD++G ETI RVTGGMK
Sbjct: 2 APRKGKAPKEEQVISLGPQVADGENVFGVAHIFASFNDTFVHVTDLSGKETIARVTGGMK 61
Query: 182 VKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXX 361
VKADRDESSPYAAMLAAQDVA RCK++GITA+HV++RATGG +++T
Sbjct: 62 VKADRDESSPYAAMLAAQDVAVRCKEIGITALHVKLRATGGNRTKTPGPGAQSALRALAR 121
Query: 362 SGMKIGRIEDVTPIPHDTT 418
SGMKIGRIEDVTPIP D T
Sbjct: 122 SGMKIGRIEDVTPIPSDCT 140
>sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1)
Length = 149
Score = 187 bits (476), Expect = 8e-48
Identities = 93/138 (67%), Positives = 111/138 (80%)
Frame = +2
Query: 5 SKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKV 184
S+RK + EE V LGP V EGE VFG+ HIFASFNDTF+HVTD++G ET+VR+TGGMKV
Sbjct: 2 SRRKTREPKEENV-LGPTVREGEFVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60
Query: 185 KADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXS 364
KADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG K++T S
Sbjct: 61 KADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120
Query: 365 GMKIGRIEDVTPIPHDTT 418
GMKIGRIEDVTP+P D+T
Sbjct: 121 GMKIGRIEDVTPVPTDST 138
>sp|P48150|RS14_CAEEL 40S ribosomal protein S14
Length = 152
Score = 187 bits (476), Expect = 8e-48
Identities = 90/138 (65%), Positives = 110/138 (79%)
Frame = +2
Query: 5 SKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKV 184
+++ K+ + VSLGP+ EGE +FG+ HIFASFNDTFVH+TD++G ETIVRVTGGMKV
Sbjct: 4 ARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGGMKV 63
Query: 185 KADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXS 364
KADRDESSPYAAMLAAQDVA+RCKQLGI A+H+++RATGGT+++T +
Sbjct: 64 KADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRALARA 123
Query: 365 GMKIGRIEDVTPIPHDTT 418
GMKIGRIEDVTPIP D T
Sbjct: 124 GMKIGRIEDVTPIPSDCT 141
>sp|O22584|RS14_LUPLU 40S ribosomal protein S14
Length = 150
Score = 187 bits (476), Expect = 8e-48
Identities = 92/138 (66%), Positives = 110/138 (79%)
Frame = +2
Query: 5 SKRKNVKKVEEQVSLGPKVTEGEEVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKV 184
S+RK EE V+LGP V++GE VFG+ IFASFNDTF+HVTD++G ET+VR+TGGMKV
Sbjct: 2 SRRKVRDTKEETVTLGPAVSDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKV 61
Query: 185 KADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXS 364
KADRDESSPYAAMLAAQDVA RCK+LGITA+H+++RATGG K++T S
Sbjct: 62 KADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGRGAQSALRALARS 121
Query: 365 GMKIGRIEDVTPIPHDTT 418
GMKIGRIEDVTPIP D+T
Sbjct: 122 GMKIGRIEDVTPIPSDST 139
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,014,910
Number of Sequences: 369166
Number of extensions: 617470
Number of successful extensions: 2244
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2025
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2822184570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)