Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_B02
(601 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid... 195 8e-50
sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolip... 194 2e-49
sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolip... 192 4e-49
sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolip... 192 4e-49
sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolip... 191 2e-48
sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolip... 191 2e-48
sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolip... 191 2e-48
sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolip... 191 2e-48
sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolip... 188 8e-48
sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolip... 186 3e-47
>sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P63082|VATL_MOUSE Vacuolar ATP synthase 16 kDa proteolipid subunit (PL16)
Length = 155
Score = 195 bits (495), Expect = 8e-50
Identities = 107/143 (74%), Positives = 114/143 (79%)
Frame = +1
Query: 4 FFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVV 183
FFGVMG +SAMVF A+GAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVV
Sbjct: 13 FFGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVV 72
Query: 184 AVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMI 363
AVLIA + T+ +S IGIVGDAGVRGTAQQPRLFVGMI
Sbjct: 73 AVLIANSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMI 132
Query: 364 LILIFAEVLGLYGLIVALILSTK 432
LILIFAEVLGLYGLIVALILSTK
Sbjct: 133 LILIFAEVLGLYGLIVALILSTK 155
>sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 194 bits (492), Expect = 2e-49
Identities = 107/147 (72%), Positives = 114/147 (77%), Gaps = 3/147 (2%)
Frame = +1
Query: 1 PFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLV 180
PFFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLV
Sbjct: 9 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 68
Query: 181 VAVLIAQQI---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLF 351
VAVLIA + NYT+ K H IGIVGDAGVRGTAQQPRLF
Sbjct: 69 VAVLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLF 128
Query: 352 VGMILILIFAEVLGLYGLIVALILSTK 432
VGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 129 VGMILILIFAEVLGLYGLIVAIYLYTK 155
>sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolipid subunit (15 kDa
mediatophore protein)
Length = 154
Score = 192 bits (489), Expect = 4e-49
Identities = 106/143 (74%), Positives = 115/143 (80%)
Frame = +1
Query: 4 FFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVV 183
FFGV+G ++AMVF ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVV
Sbjct: 12 FFGVIGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVV 71
Query: 184 AVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMI 363
AVLIA + + ++ KS IGIVGDAGVRGTAQQPRLFVGMI
Sbjct: 72 AVLIANSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMI 131
Query: 364 LILIFAEVLGLYGLIVALILSTK 432
LILIFAEVLGLYGLIVALILSTK
Sbjct: 132 LILIFAEVLGLYGLIVALILSTK 154
>sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 192 bits (489), Expect = 4e-49
Identities = 106/147 (72%), Positives = 114/147 (77%), Gaps = 3/147 (2%)
Frame = +1
Query: 1 PFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLV 180
PFFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLV
Sbjct: 9 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 68
Query: 181 VAVLIAQQI---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLF 351
VAVLIA + NYT+ + H IGIVGDAGVRGTAQQPRLF
Sbjct: 69 VAVLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLF 128
Query: 352 VGMILILIFAEVLGLYGLIVALILSTK 432
VGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 129 VGMILILIFAEVLGLYGLIVAIYLYTK 155
>sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 191 bits (484), Expect = 2e-48
Identities = 105/143 (73%), Positives = 113/143 (79%)
Frame = +1
Query: 4 FFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVV 183
FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE IMKSIIPVVMAGIIAIYGLVV
Sbjct: 13 FFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVV 72
Query: 184 AVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMI 363
AVLIA + + ++ KS IGIVGDAGVRGTAQQPRLFVGMI
Sbjct: 73 AVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMI 132
Query: 364 LILIFAEVLGLYGLIVALILSTK 432
LILIFAEVLGLYGLIVALILSTK
Sbjct: 133 LILIFAEVLGLYGLIVALILSTK 155
>sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 191 bits (484), Expect = 2e-48
Identities = 104/143 (72%), Positives = 113/143 (79%)
Frame = +1
Query: 4 FFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVV 183
FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYGLVV
Sbjct: 13 FFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVV 72
Query: 184 AVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMI 363
AVLIA + ++ +S IGIVGDAGVRGTAQQPRLFVGMI
Sbjct: 73 AVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMI 132
Query: 364 LILIFAEVLGLYGLIVALILSTK 432
LILIFAEVLGLYGLIVALILSTK
Sbjct: 133 LILIFAEVLGLYGLIVALILSTK 155
>sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolipid subunit (V-ATPase
C-subunit)
Length = 157
Score = 191 bits (484), Expect = 2e-48
Identities = 105/146 (71%), Positives = 114/146 (78%), Gaps = 2/146 (1%)
Frame = +1
Query: 1 PFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLV 180
PFFGVMG +A++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLV
Sbjct: 12 PFFGVMGAAAAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 71
Query: 181 VAVLIAQQIG--TNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFV 354
VAVLIA + T Y++ K H IGIVGDAGVRGTAQQPRLFV
Sbjct: 72 VAVLIAGSLDTPTKYSLYKGFIHLGAGLAVGISGLAAGFAIGIVGDAGVRGTAQQPRLFV 131
Query: 355 GMILILIFAEVLGLYGLIVALILSTK 432
GMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 132 GMILILIFAEVLGLYGLIVAIYLYTK 157
>sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 191 bits (484), Expect = 2e-48
Identities = 104/143 (72%), Positives = 113/143 (79%)
Frame = +1
Query: 4 FFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVV 183
FF VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYGLVV
Sbjct: 13 FFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVV 72
Query: 184 AVLIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMI 363
AVLIA + ++ +S IGIVGDAGVRGTAQQPRLFVGMI
Sbjct: 73 AVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMI 132
Query: 364 LILIFAEVLGLYGLIVALILSTK 432
LILIFAEVLGLYGLIVALILSTK
Sbjct: 133 LILIFAEVLGLYGLIVALILSTK 155
>sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolipid subunit (Ductin) (VHA16K)
Length = 159
Score = 188 bits (478), Expect = 8e-48
Identities = 104/146 (71%), Positives = 114/146 (78%), Gaps = 2/146 (1%)
Frame = +1
Query: 1 PFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLV 180
PFFGVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLV
Sbjct: 14 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 73
Query: 181 VAVLIAQQI--GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFV 354
VAVLIA + + Y++ + H IGIVGDAGVRGTAQQPRLFV
Sbjct: 74 VAVLIAGALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFV 133
Query: 355 GMILILIFAEVLGLYGLIVALILSTK 432
GMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 134 GMILILIFAEVLGLYGLIVAIYLYTK 159
>sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 159
Score = 186 bits (473), Expect = 3e-47
Identities = 103/146 (70%), Positives = 112/146 (76%), Gaps = 2/146 (1%)
Frame = +1
Query: 1 PFFGVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLV 180
PFFGVMG SAMVF ALGAAYGTAKSG GI++M+VMRPELIMK IIPVVMAGIIAIYGLV
Sbjct: 11 PFFGVMGAASAMVFSALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLV 70
Query: 181 VAVLIAQQI--GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFV 354
VAVLIA ++ YT+ + H IGIVGDAGVRGTAQQPRL+V
Sbjct: 71 VAVLIAGKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYV 130
Query: 355 GMILILIFAEVLGLYGLIVALILSTK 432
GMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 131 GMILILIFAEVLGLYGLIVAIFLYTK 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,469,549
Number of Sequences: 369166
Number of extensions: 977893
Number of successful extensions: 3461
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3381
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4602033670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)