Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_B01
(363 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (He... 85 6e-17
sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (He... 85 6e-17
sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (He... 85 6e-17
sp|Q9I8F9|HSP71_ORYLA Heat shock 70 kDa protein 1 (HSP70-1) 83 2e-16
sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HS... 82 4e-16
sp|P16627|HS70L_MOUSE Heat shock 70 kDa protein 1L (Heat sh... 82 4e-16
sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (He... 82 4e-16
sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 (... 80 1e-15
sp|P55063|HS70L_RAT Heat shock 70 kDa protein 1L (Heat shoc... 80 1e-15
sp|P14659|HSP72_RAT Heat shock-related 70 kDa protein 2 (He... 80 1e-15
>sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|Q71U34|HSP7C_SAGOE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
(Intracellular vitamin D binding protein 1)
Length = 646
Score = 84.7 bits (208), Expect = 6e-17
Identities = 40/86 (46%), Positives = 51/86 (59%)
Frame = +2
Query: 5 KISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXXX 184
KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ
Sbjct: 561 KINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGG 620
Query: 185 XXXXXXXXXXXXXXXXKQGPTVEEVD 262
GPT+EEVD
Sbjct: 621 MPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|P63018|HSP7C_RAT Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 84.7 bits (208), Expect = 6e-17
Identities = 40/86 (46%), Positives = 51/86 (59%)
Frame = +2
Query: 5 KISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXXX 184
KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ
Sbjct: 561 KINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGG 620
Query: 185 XXXXXXXXXXXXXXXXKQGPTVEEVD 262
GPT+EEVD
Sbjct: 621 MPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 84.7 bits (208), Expect = 6e-17
Identities = 40/86 (46%), Positives = 51/86 (59%)
Frame = +2
Query: 5 KISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXXX 184
KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ
Sbjct: 561 KINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGG 620
Query: 185 XXXXXXXXXXXXXXXXKQGPTVEEVD 262
GPT+EEVD
Sbjct: 621 MPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|Q9I8F9|HSP71_ORYLA Heat shock 70 kDa protein 1 (HSP70-1)
Length = 639
Score = 82.8 bits (203), Expect = 2e-16
Identities = 42/87 (48%), Positives = 51/87 (58%)
Frame = +2
Query: 2 DKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXX 181
DKIS+ DRK +V+KC E I WL+ NQ A KDEF + KELEKVCNPI++K+YQ
Sbjct: 562 DKISQEDRKRVVEKCDETIAWLENNQLADKDEFQHKQKELEKVCNPIISKLYQ------- 614
Query: 182 XXXXXXXXXXXXXXXXXKQGPTVEEVD 262
QGPT+EEVD
Sbjct: 615 --GGMPSGSCREQARADSQGPTIEEVD 639
>sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HSP70)
Length = 651
Score = 82.0 bits (201), Expect = 4e-16
Identities = 41/91 (45%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Frame = +2
Query: 5 KISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ-----XXX 169
KIS+ D+ I++KC E IGWLDKNQ A K+E+++H KELEKVCNPI+TK+YQ
Sbjct: 561 KISDEDKTKILEKCNEVIGWLDKNQTAEKEEYEHHQKELEKVCNPIITKLYQGAGGMPGG 620
Query: 170 XXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 262
GPT+EEVD
Sbjct: 621 MPEGMAGGFPGAGGAAPGGGGSSGPTIEEVD 651
>sp|P16627|HS70L_MOUSE Heat shock 70 kDa protein 1L (Heat shock 70 kDa protein 1-like)
(Heat shock 70 kDa-like protein 1) (Spermatid-specific
heat shock protein 70)
Length = 641
Score = 82.0 bits (201), Expect = 4e-16
Identities = 42/87 (48%), Positives = 51/87 (58%)
Frame = +2
Query: 2 DKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXX 181
DKISESD+K I+DKC E + WL+ NQ A KDEFD+ KELE +CNPI+TK+YQ
Sbjct: 562 DKISESDKKKILDKCNEVLSWLEANQLAEKDEFDHKRKELENMCNPIITKLYQ------- 614
Query: 182 XXXXXXXXXXXXXXXXXKQGPTVEEVD 262
GPT+EEVD
Sbjct: 615 SGCTGPTCTPGYTPGRAATGPTIEEVD 641
>sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 649
Score = 82.0 bits (201), Expect = 4e-16
Identities = 41/89 (46%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Frame = +2
Query: 5 KISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ---XXXXX 175
KIS+ D++ I+DKC E IGWLDKNQ A ++EF++ KELEKVCNPI+TK+YQ
Sbjct: 561 KISDEDKQKILDKCNEVIGWLDKNQTAEREEFEHQQKELEKVCNPIITKLYQSAGGMPGG 620
Query: 176 XXXXXXXXXXXXXXXXXXXKQGPTVEEVD 262
GPT+EEVD
Sbjct: 621 MPEGMPGGFPGAGAAPGGGSSGPTIEEVD 649
>sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 (Heat shock 70 kDa protein 2)
Length = 639
Score = 80.5 bits (197), Expect = 1e-15
Identities = 40/86 (46%), Positives = 51/86 (59%)
Frame = +2
Query: 5 KISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXXX 184
KISE D+ I+DKCQE I WLD+NQ A KDE+++ KELE+VCNPI++K+YQ
Sbjct: 564 KISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ-------- 615
Query: 185 XXXXXXXXXXXXXXXXKQGPTVEEVD 262
GPT+EEVD
Sbjct: 616 --GGPGGGSGGGGSGASGGPTIEEVD 639
>sp|P55063|HS70L_RAT Heat shock 70 kDa protein 1L (Heat shock 70 kDa protein 1-like)
(Heat shock 70 kDa protein 3) (HSP70.3)
Length = 641
Score = 80.5 bits (197), Expect = 1e-15
Identities = 41/87 (47%), Positives = 51/87 (58%)
Frame = +2
Query: 2 DKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXX 181
DKISESD+K I+DKC E + WL+ NQ A K+EFD+ KELE +CNPI+TK+YQ
Sbjct: 562 DKISESDKKKILDKCSEVLSWLEANQLAEKEEFDHKRKELENMCNPIITKLYQ------- 614
Query: 182 XXXXXXXXXXXXXXXXXKQGPTVEEVD 262
GPT+EEVD
Sbjct: 615 SGCTGPTCAPGYTPGRAATGPTIEEVD 641
>sp|P14659|HSP72_RAT Heat shock-related 70 kDa protein 2 (Heat shock protein 70.2)
(Testis-specific heat shock protein-related) (HST)
Length = 633
Score = 80.5 bits (197), Expect = 1e-15
Identities = 40/86 (46%), Positives = 51/86 (59%)
Frame = +2
Query: 5 KISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXXX 184
KISE D+ I+DKCQE I WLD+NQ A KDE+++ KELE+VCNPI++K+YQ
Sbjct: 564 KISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ-------- 615
Query: 185 XXXXXXXXXXXXXXXXKQGPTVEEVD 262
GPT+EEVD
Sbjct: 616 --------GGPGGGGSSGGPTIEEVD 633
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,129,528
Number of Sequences: 369166
Number of extensions: 291482
Number of successful extensions: 990
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)