Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_A15
(863 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15643|TRIPB_HUMAN Thyroid receptor-interacting protein ... 60 8e-09
sp|P02566|MYO4_CAEEL Myosin-4 (Myosin heavy chain B) (MHC B... 57 9e-08
sp|P25386|USO1_YEAST Intracellular protein transport protei... 56 1e-07
sp|P37709|TRHY_RABIT Trichohyalin 52 2e-06
sp|Q9PTD7|CING_XENLA Cingulin 52 2e-06
sp|Q80UK7|SAS6_MOUSE Spindle assembly abnormal protein 6 ho... 51 4e-06
sp|Q6UVJ0|SAS6_HUMAN Spindle assembly abnormal protein 6 ho... 51 4e-06
sp|Q9NYA3|GOGA6_HUMAN Golgin subfamily A member 6 (Golgin l... 51 4e-06
sp|P41508|P115_MYCHR Protein P115 51 5e-06
sp|P53278|YG3A_YEAST Hypothetical 92.7 kDa protein in ASN2-... 50 6e-06
>sp|Q15643|TRIPB_HUMAN Thyroid receptor-interacting protein 11 (TRIP-11) (Golgi-associated
microtubule-binding protein 210) (GMAP-210) (Trip230)
(Clonal evolution related gene on chromosome 14)
Length = 1979
Score = 60.1 bits (144), Expect = 8e-09
Identities = 74/281 (26%), Positives = 124/281 (44%), Gaps = 22/281 (7%)
Frame = +2
Query: 11 KSINAKLNTSNEELMQYKKEAESLKHLKELIESEKNNLA----DGARQLISLREENNSLN 178
K A++ + L + ++ E+LK + ++ E L D QL NN L+
Sbjct: 645 KEREAEVRNLKQNLSELEQLNENLKKVAFDVKMENEKLVLACEDVRHQLEECLAGNNQLS 704
Query: 179 QEKNEILQ----NKYKVEAEL-----KSLSQEKKFLKI--ELSNEKEL-TSQXXXXXXXX 322
EKN I++ K ++EAEL + L + K+ K ELSN + L TS
Sbjct: 705 LEKNTIVETLKMEKGEIEAELCWAKKRLLEEANKYEKTIEELSNARNLNTSALQLEHEHL 764
Query: 323 XXXXXXXXXXXMRLEAKIESLSRQTEHLMEENKKLL---LQMKSMLTQ---NQELITETL 484
L+ IE + T+H +E K +L L+ + LTQ +E+ E L
Sbjct: 765 IKLNQKKDMEIAELKKNIEQM--DTDH--KETKDVLSSSLEEQKQLTQLINKKEIFIEKL 820
Query: 485 QNRQNQHSEEVALREKLTQLTRHKERLEEKIMEQYKSMPSAKKPRGGRNKFLRKAKEMLK 664
+ R ++ EE+ +K +Q R E L + I E+ +S+ S K+ N L++ E L+
Sbjct: 821 KERSSKLQEEL---DKYSQALRKNEILRQTIEEKDRSLGSMKE----ENNHLQEELERLR 873
Query: 665 RHDSKSSVDQERKNENSTTPVMQRSRSCGTILGAVEENKKY 787
S+++ + K +S T + TI +EE K+
Sbjct: 874 EEQSRTAPVADPKTLDSVTELASEVSQLNTIKEHLEEEIKH 914
Score = 46.6 bits (109), Expect = 9e-05
Identities = 60/288 (20%), Positives = 125/288 (43%), Gaps = 12/288 (4%)
Frame = +2
Query: 35 TSNEELMQYKKEAESLKHLKELIESEKNNLADGARQLISLREENNSLNQEKNEILQNKYK 214
T E ++ E + L++ + +N + +L SL ++N SL ++ ++
Sbjct: 372 TEKERILAQSASVEEVFRLQQALSDAENEIM----RLSSLNQDN-SLAEDNLKLKMRIEV 426
Query: 215 VEAELKSLSQEKKFLK---IELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAKIESL 385
+E E LSQEK+ L+ ++L+NE E+ + LEAK + L
Sbjct: 427 LEKEKSLLSQEKEELQMSLLKLNNEYEVIKS---TATRDISLDSELHDLRLNLEAKEQEL 483
Query: 386 SRQTEHLMEENKKLLLQMKSMLTQNQE------LITETLQNRQNQHSEEVA-LREKLTQL 544
++ + E + L+ +++ + QNQE LI + L +QN+ ++ L++ L
Sbjct: 484 NQS----ISEKETLIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSIISKLKQDLNDE 539
Query: 545 TRHKERLEEKIMEQYKSMPSAKKPRGGRNKFLRKAKEMLKRHDSK--SSVDQERKNENST 718
+ +LE+ M+ K + K+ L ++ + K + VDQ K++ S
Sbjct: 540 KKRVHQLEDDKMDITKELDVQKEKLIQSEVALNDLHLTKQKLEDKVENLVDQLNKSQESN 599
Query: 719 TPVMQRSRSCGTILGAVEENKKYSIGDRSSDFQVDNTDTNDIFQQKII 862
+ + + + + +N++ R+ Q N D+N F+ ++
Sbjct: 600 VSIQKENLE---LKEHIRQNEEELSRIRNELMQSLNQDSNSNFKDTLL 644
>sp|P02566|MYO4_CAEEL Myosin-4 (Myosin heavy chain B) (MHC B) (Uncoordinated protein 54)
Length = 1966
Score = 56.6 bits (135), Expect = 9e-08
Identities = 47/227 (20%), Positives = 106/227 (46%), Gaps = 1/227 (0%)
Frame = +2
Query: 26 KLNTSNEELMQYKKEAESLKHLKELIESEKNNLADGARQLISLREENNSLNQEKNEILQN 205
KL + +++ KEAE L+ + + +++ +++LA + L E + L +EK + N
Sbjct: 843 KLYGKVKPMLKAGKEAEELEKINDKVKALEDSLAKEEKLRKELEESSAKLVEEKTSLFTN 902
Query: 206 KYKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAKIESL 385
+ +L + L+ + + + S+ ++EA++E+L
Sbjct: 903 LESTKTQLSDAEERLAKLEAQQKDASKQLSELNDQLADNEDRTADVQRAKKKIEAEVEAL 962
Query: 386 SRQTEHLMEENKKLLLQMKSMLTQNQELITETLQNRQNQHSEEVALREKLTQLTRHKERL 565
+Q + L ++ L+ Q+++ +LQ+ Q E +A KL + +H+E +
Sbjct: 963 KKQIQDL-----EMSLRKAESEKQSKDHQIRSLQDEMQQQDEAIA---KLNKEKKHQEEI 1014
Query: 566 EEKIMEQYKSMPSAKKPRGG-RNKFLRKAKEMLKRHDSKSSVDQERK 703
K+ME +S ++ +G +NK K ++ L D + S+++E++
Sbjct: 1015 NRKLMEDLQS----EEDKGNHQNKVKAKLEQTL--DDLEDSLEREKR 1055
Score = 34.3 bits (77), Expect = 0.46
Identities = 51/252 (20%), Positives = 103/252 (40%), Gaps = 5/252 (1%)
Frame = +2
Query: 74 ESLKHLKELIESEKNNLADGARQLISLREENNSLNQEKNEILQNKYKVEAELKSLSQEKK 253
E+L K E K +AD R LR+E ++ V+ K L Q+ K
Sbjct: 1755 ETLNEYKAAEERSKKAIADATRLAEELRQEQ-----------EHSQHVDRLRKGLEQQLK 1803
Query: 254 FLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAKIESLSRQTEHLMEENKKLLL 433
+++ L +E E + ++ AK+E R+ E ++ ++
Sbjct: 1804 EIQVRL-DEAEAAA----------------LKGGKKVIAKLEQRVRELESELDGEQRRFQ 1846
Query: 434 QMKSMLTQNQELITETLQNRQNQHSEEVALREKLTQLTRHKERLEEKIMEQYKSMPSAKK 613
L + + E Q Q E+ E+L L ++L++K+ Q K + A++
Sbjct: 1847 DANKNLGRADRRVREL----QFQVDEDKKNFERLQDLI---DKLQQKLKTQKKQVEEAEE 1899
Query: 614 PRGGRNKFLRKAKEMLKRHDSKSSVDQERKNENSTTPVMQRSRSCGTILGAVEENKKYSI 793
N L+K K++ H + + ++ + ENS + + +SR+ ++ ++ + ++
Sbjct: 1900 L---ANLNLQKYKQL--THQLEDAEERADQAENSLSKMRSKSRASASVAPGLQSSASAAV 1954
Query: 794 -----GDRSSDF 814
R+SDF
Sbjct: 1955 IRSPSRARASDF 1966
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 (Int-1)
Length = 1790
Score = 55.8 bits (133), Expect = 1e-07
Identities = 62/289 (21%), Positives = 127/289 (43%), Gaps = 17/289 (5%)
Frame = +2
Query: 26 KLNTSNEELMQYKKEAESLKHLKELIESEKNNLADGARQLISLREENN----SLNQEKNE 193
K++ SN+EL++ K+ ++K L++ I S K+ + +L+S+ +N SL ++
Sbjct: 1417 KVSLSNDELLEEKQN--TIKSLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQLRA 1474
Query: 194 ILQNKYKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAK 373
++K KVE LK L +E K EL KE+ +LE+
Sbjct: 1475 AQESKAKVEEGLKKLEEESSKEKAELEKSKEMMK---------------------KLEST 1513
Query: 374 IESLSRQTEHLMEENKKLLLQMKSMLTQNQELITETLQNRQNQHSEEVAL---REKLTQL 544
IES + + ME +K L Q+++ E ++N Q++ S+ ++ EK +
Sbjct: 1514 IESNETELKSSMETIRK----SDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEE 1569
Query: 545 TRHKERLE-------EKIMEQYKSMPSAKKPRGGRNKFLRKAKEMLKRHDSKSSVDQERK 703
+ K R+E E + ++ + + N L+ E ++R + K + +
Sbjct: 1570 LKSKLRIEAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIER-ELKDKQAEIKS 1628
Query: 704 NENSTTPVMQRSRSCGTILGAVEENKKYSIGDRSSD---FQVDNTDTND 841
N+ + R + L + ++ + S +R ++ FQV+ + ++
Sbjct: 1629 NQEEKELLTSRLKELEQELDSTQQKAQKSEEERRAEVRKFQVEKSQLDE 1677
Score = 46.6 bits (109), Expect = 9e-05
Identities = 58/289 (20%), Positives = 122/289 (42%), Gaps = 7/289 (2%)
Frame = +2
Query: 11 KSINAKLNTSNEELMQYKKEAESLKHLKELIESEKNNLADGARQLISLRE-ENNSLNQEK 187
+ N +++ N+E+ ++E ES+K + +E E + + + +L++ E ++LN +
Sbjct: 1173 RQYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQI 1232
Query: 188 NEILQNKYKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLE 367
E+ K K E SL + K ++ E KEL + E
Sbjct: 1233 KEL---KKKNETNEASLLESIKSVESETVKIKELQDECNFK------------------E 1271
Query: 368 AKIESLSRQTEHLMEENKKLLLQMKSMLTQNQELITETLQNRQNQHSEEVALREKLTQLT 547
++ L + + ++N K L L + E I E L + + ++ EK+T L+
Sbjct: 1272 KEVSELEDKLKASEDKNSKYL-----ELQKESEKIKEELDAKTTELKIQL---EKITNLS 1323
Query: 548 RHKERLEEKIMEQYKSMPSAKKPRGGRNKFLRKAKEMLKRHDSKSSVDQERKNENSTTPV 727
+ KE+ E ++ K ++ + R + L K K ++ + +++ NE S+T
Sbjct: 1324 KAKEKSESELSRLKK---TSSEERKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTIT 1380
Query: 728 MQRSRSCGTI------LGAVEENKKYSIGDRSSDFQVDNTDTNDIFQQK 856
+ S T+ L E K I + S+ + + +++ ++K
Sbjct: 1381 QEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEK 1429
Score = 43.5 bits (101), Expect = 8e-04
Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 2/236 (0%)
Frame = +2
Query: 2 SINKSINAKLNTSNEELMQYKKEAESLKHLKELIESEKNNLADGARQLISLREENNSLNQ 181
++ + KL TS + L + K E+ +HLKE + I L +E Q
Sbjct: 1096 NLKNELETKLETSEKALKEVK---ENEEHLKE--------------EKIQLEKEATETKQ 1138
Query: 182 EKNEILQNKYKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMR 361
+ N + N +E E + L+ + K + +++N++ ++ +
Sbjct: 1139 QLNSLRANLESLEKEHEDLAAQLKKYEEQIANKERQYNE-----------------EISQ 1181
Query: 362 LEAKIESLSRQTEHLMEENKKLLLQMKSMLTQNQELITETLQNRQNQHSEEVALREKLTQ 541
L +I S ++ E + ++N +L ++K+M + ++E + SE AL ++ +
Sbjct: 1182 LNDEITSTQQENESIKKKNDELEGEVKAMKSTSEE-------QSNLKKSEIDALNLQIKE 1234
Query: 542 LTRHKERLEEKIMEQYKSMPS-AKKPRGGRNKFLRKAKEMLKRHDS-KSSVDQERK 703
L + E E ++E KS+ S K + +++ K KE+ + D K+S D+ K
Sbjct: 1235 LKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSK 1290
Score = 41.2 bits (95), Expect = 0.004
Identities = 57/285 (20%), Positives = 121/285 (42%), Gaps = 18/285 (6%)
Frame = +2
Query: 41 NEELMQYKKEAESLKHLKELIESEKNNLADGARQLISLREENNSL----NQEKNEILQNK 208
++EL++YK +S +L + + +LA+ + + + EN SL + KNE
Sbjct: 940 SKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDM---QAENESLIKAVEESKNESSIQL 996
Query: 209 YKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAKIESLS 388
++ ++ S+SQEK+ +IE + +E IE L
Sbjct: 997 SNLQNKIDSMSQEKENFQIERGS----------------------------IEKNIEQLK 1028
Query: 389 RQTEHLMEENKKLLLQMKSMLTQNQ---ELITETLQNRQNQHSEEVALREKLTQLTRHKE 559
+ L + ++++ + S + + L+ E L+ + E V K+++LT+ +E
Sbjct: 1029 KTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTANDENV---NKISELTKTRE 1085
Query: 560 RLEEKIMEQYKSMPSAKKPR-GGRNKFLRKAKEMLKRHDSKSSVDQERKNENSTTPVMQR 736
LE + + YK++ + + + K L++ KE + + +++ + E T Q+
Sbjct: 1086 ELEAE-LAAYKNLKNELETKLETSEKALKEVKE-----NEEHLKEEKIQLEKEATETKQQ 1139
Query: 737 SRSCGTILGAVEEN--------KKY--SIGDRSSDFQVDNTDTND 841
S L ++E+ KKY I ++ + + + ND
Sbjct: 1140 LNSLRANLESLEKEHEDLAAQLKKYEEQIANKERQYNEEISQLND 1184
Score = 36.6 bits (83), Expect = 0.093
Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 11/194 (5%)
Frame = +2
Query: 23 AKLNTSNEELMQYKK----EAESLKHLKELIESEKNNLADGARQLISLREENNSLNQEKN 190
+++N S +++ + K EA+S L E ++ E NN A++ I + E N++ + K
Sbjct: 1558 SRINESEKDIEELKSKLRIEAKSGSEL-ETVKQELNN----AQEKIRINAEENTVLKSKL 1612
Query: 191 EILQNKYK-VEAELKSLSQEKKFLKIELSN-EKELTSQXXXXXXXXXXXXXXXXXXXMRL 364
E ++ + K +AE+KS +EK+ L L E+EL S
Sbjct: 1613 EDIERELKDKQAEIKSNQEEKELLTSRLKELEQELDSTQQKAQKSEE------------- 1659
Query: 365 EAKIESLSRQTEHLMEENKKLLLQMKSMLTQNQELI----TETLQNRQNQHSEEV-ALRE 529
E + E Q E + K +LL+ K N+E +T++ + +E+ L +
Sbjct: 1660 ERRAEVRKFQVEKSQLDEKAMLLETKYNDLVNKEQAWKRDEDTVKKTTDSQRQEIEKLAK 1719
Query: 530 KLTQLTRHKERLEE 571
+L L +L+E
Sbjct: 1720 ELDNLKAENSKLKE 1733
Score = 30.4 bits (67), Expect = 6.7
Identities = 29/110 (26%), Positives = 43/110 (39%)
Frame = +2
Query: 410 EENKKLLLQMKSMLTQNQELITETLQNRQNQHSEEVALREKLTQLTRHKERLEEKIMEQY 589
EE +KL Q + + L TET +N L EKL LT + L+EK
Sbjct: 730 EEVEKLQRQCTKLKGEITSLQTETESTHEN-------LTEKLIALTNEHKELDEKYQILN 782
Query: 590 KSMPSAKKPRGGRNKFLRKAKEMLKRHDSKSSVDQERKNENSTTPVMQRS 739
S S K+ L+ ++ L V + + EN T + +S
Sbjct: 783 SSHSSLKENFSILETELKNVRDSLDEMTQLRDVLETKDKENQTALLEYKS 832
>sp|P37709|TRHY_RABIT Trichohyalin
Length = 1407
Score = 52.4 bits (124), Expect = 2e-06
Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 2/227 (0%)
Frame = +2
Query: 29 LNTSNEELMQYKKEAESLKHLKELIESEKNNLADGARQLISLREENNSLNQEKNEILQNK 208
L EE ++ ++ L+ ++L+ E+ L + LREE L +E+ E+ Q +
Sbjct: 613 LQEREEERLRRQERERKLREEEQLLRQEEQELRQERER--KLREEEQLLRREEQELRQER 670
Query: 209 YKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAKIESLS 388
+ E + L QE++ E+ L Q +R E E
Sbjct: 671 ERKLREEEQLLQERE--------EERLRRQERARKLREEEQLLRQEEQELRQER--ERKL 720
Query: 389 RQTEHLMEENKKLLLQMKS-MLTQNQELITETLQNRQNQHSEEVALREKLTQLTRHKER- 562
R+ E L+ ++LL Q + L + ++L+ E+ + R + E LR + + R +E+
Sbjct: 721 REEEQLLRREEQLLRQERDRKLREEEQLLQESEEERLRRQEREQQLRRERDRKFREEEQL 780
Query: 563 LEEKIMEQYKSMPSAKKPRGGRNKFLRKAKEMLKRHDSKSSVDQERK 703
L+E+ E+ + +K R + +E L+R + + + +E +
Sbjct: 781 LQEREEERLRRQERERKLREEEQLLQEREEERLRRQERERKLREEEQ 827
Score = 45.1 bits (105), Expect = 3e-04
Identities = 46/218 (21%), Positives = 93/218 (42%), Gaps = 13/218 (5%)
Frame = +2
Query: 89 LKELIESEKNNLADGARQLISLREENNSLNQEKNEILQNKYKVEAELKSLSQEKKFLK-- 262
L+E + ++ L Q LREE +++ + + +Y+ E +L+ EK+ +
Sbjct: 526 LQEEAQRRRHTLYAKPGQQEQLREEEELQREKRRQEREREYREEEKLQREEDEKRRRQER 585
Query: 263 -------IELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAKI---ESLSRQTEHLME 412
EL E++L + E K+ E L RQ E +
Sbjct: 586 ERQYRELEELRQEEQLRDRKLREEEQLLQEREEERLRRQERERKLREEEQLLRQEEQELR 645
Query: 413 ENKKLLLQMKSMLTQNQELITETLQNRQNQ-HSEEVALREKLTQLTRHKERLEEKIMEQY 589
+ ++ L+ + L + +E E Q R+ + EE L+E+ + R +ER + E+
Sbjct: 646 QERERKLREEEQLLRREE--QELRQERERKLREEEQLLQEREEERLRRQERARKLREEEQ 703
Query: 590 KSMPSAKKPRGGRNKFLRKAKEMLKRHDSKSSVDQERK 703
++ R R + LR+ +++L+R + +++RK
Sbjct: 704 LLRQEEQELRQERERKLREEEQLLRREEQLLRQERDRK 741
Score = 43.9 bits (102), Expect = 6e-04
Identities = 42/226 (18%), Positives = 97/226 (42%)
Frame = +2
Query: 26 KLNTSNEELMQYKKEAESLKHLKELIESEKNNLADGARQLISLREENNSLNQEKNEILQN 205
KL + L + ++E + ++ + E++ QL+ REE QE+ L+
Sbjct: 741 KLREEEQLLQESEEERLRRQEREQQLRRERDRKFREEEQLLQEREEERLRRQERERKLRE 800
Query: 206 KYKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAKIESL 385
+ ++ E + ++ + +L E++L + L + + L
Sbjct: 801 EEQLLQEREEERLRRQERERKLREEEQLLQEREEERLRRQERERKLREEEQLLRQEEQEL 860
Query: 386 SRQTEHLMEENKKLLLQMKSMLTQNQELITETLQNRQNQHSEEVALREKLTQLTRHKERL 565
++ + E ++LL Q + L Q ++ + + Q EE LR++ + R +E+L
Sbjct: 861 RQERARKLREEEQLLRQEEQELRQERD--RKLREEEQLLRQEEQELRQERDRKLREEEQL 918
Query: 566 EEKIMEQYKSMPSAKKPRGGRNKFLRKAKEMLKRHDSKSSVDQERK 703
++ E+ + R R + LR+ +++L+R + + ++ RK
Sbjct: 919 LQESEEE-------RLRRQERERKLREEEQLLRREEQELRRERARK 957
Score = 43.9 bits (102), Expect = 6e-04
Identities = 43/231 (18%), Positives = 96/231 (41%)
Frame = +2
Query: 44 EELMQYKKEAESLKHLKELIESEKNNLADGARQLISLREENNSLNQEKNEILQNKYKVEA 223
EE ++ A L+ ++L++ + + LREE L +E+ E+ Q + +
Sbjct: 946 EEQELRRERARKLREEEQLLQEREEERLRRQERARKLREEEQLLRREEQELRQERDRKFR 1005
Query: 224 ELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAKIESLSRQTEH 403
E + L QE++ E+ L Q + + + R E
Sbjct: 1006 EEEQLLQERE--------EERLRRQERDRKFREEERQLRRQELEEQFRQERDRKFRLEEQ 1057
Query: 404 LMEENKKLLLQMKSMLTQNQELITETLQNRQNQHSEEVALREKLTQLTRHKERLEEKIME 583
+ +E ++ L+ + + E Q R+ Q E+ RE+ + ++ L+E+ E
Sbjct: 1058 IRQEKEEKQLRRQ----ERDRKFREEEQQRRRQEREQQLRRERDRKFREEEQLLQEREEE 1113
Query: 584 QYKSMPSAKKPRGGRNKFLRKAKEMLKRHDSKSSVDQERKNENSTTPVMQR 736
+ + A+K R + LR+ +++L++ + ++E+ + S ++R
Sbjct: 1114 RLRRQERARKLR-EEEQLLRREEQLLRQERDRKFREEEQLLQESEEERLRR 1163
Score = 39.3 bits (90), Expect = 0.014
Identities = 47/230 (20%), Positives = 99/230 (43%), Gaps = 5/230 (2%)
Frame = +2
Query: 26 KLNTSNEELMQYKKEAESLKHLKELIESEKNNLADGARQLISLREENNSLNQEKNEILQN 205
+L E+ ++ +++ + + + L ESE+ L R+ LREE L +E+ E+ +
Sbjct: 895 QLLRQEEQELRQERDRKLREEEQLLQESEEERLRRQERER-KLREEEQLLRREEQELRRE 953
Query: 206 KYKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAKIESL 385
+ + E + L QE++ E+ L Q +L + + L
Sbjct: 954 RARKLREEEQLLQERE--------EERLRRQ----------------ERARKLREEEQLL 989
Query: 386 SRQTEHLMEENKKLLLQMKSMLTQNQELITETLQNRQNQHSEEVALR-----EKLTQLTR 550
R+ + L +E + + + +L + +E + + EE LR E+ Q
Sbjct: 990 RREEQELRQERDRKFREEEQLLQEREEERLRRQERDRKFREEERQLRRQELEEQFRQERD 1049
Query: 551 HKERLEEKIMEQYKSMPSAKKPRGGRNKFLRKAKEMLKRHDSKSSVDQER 700
K RLEE+I ++ + + R R++ R+ ++ +R + + + +ER
Sbjct: 1050 RKFRLEEQIRQEKE---EKQLRRQERDRKFREEEQQRRRQEREQQLRRER 1096
Score = 33.9 bits (76), Expect = 0.60
Identities = 40/231 (17%), Positives = 99/231 (42%), Gaps = 2/231 (0%)
Frame = +2
Query: 26 KLNTSNEELMQYKKEAESLKHLKELIESEKNNLADGARQLISLREENNSLNQE--KNEIL 199
+L EE+ + ++ E + ++ +E E+ R+L +RE L QE + ++L
Sbjct: 298 QLRRELEEIREREQRLEQEERREQRLEQEERREQQLKRELEEIREREQRLEQEERREQLL 357
Query: 200 QNKYKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAKIE 379
+ + +A + S +++ +++L S+ +R + +
Sbjct: 358 AEEVREQARERGESLTRRW-------QRQLESEAGARQSKVYSRPRRQEEQSLRQDQERR 410
Query: 380 SLSRQTEHLMEENKKLLLQMKSMLTQNQELITETLQNRQNQHSEEVALREKLTQLTRHKE 559
+ L E+ ++ Q Q E + R+ + S +LRE+ QL R +E
Sbjct: 411 QRQERERELEEQARR----------QQQWQAEEESERRRQRLSARPSLRER--QL-RAEE 457
Query: 560 RLEEKIMEQYKSMPSAKKPRGGRNKFLRKAKEMLKRHDSKSSVDQERKNEN 712
R E++ ++++ ++ R +FL + +++ +R ++ +++ E+
Sbjct: 458 RQEQE--QRFREEEEQRRERRQELQFLEEEEQLQRRERAQQLQEEDSFQED 506
Score = 32.0 bits (71), Expect = 2.3
Identities = 47/235 (20%), Positives = 94/235 (40%), Gaps = 8/235 (3%)
Frame = +2
Query: 29 LNTSNEELMQYKKEAESLKHLKELIESEKNNLADGARQLISLR---EENNSLNQEKNEIL 199
L E + ++E E + + + + ++ RQ +S R E +E+ E
Sbjct: 403 LRQDQERRQRQERERELEEQARRQQQWQAEEESERRRQRLSARPSLRERQLRAEERQEQE 462
Query: 200 QNKYKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAKIE 379
Q + E + + QE +FL+ E ++ +Q R + E
Sbjct: 463 QRFREEEEQRRERRQELQFLEEEEQLQRRERAQQLQEEDSFQEDRE-------RRRRQQE 515
Query: 380 SLSRQTEH--LMEENKKLLLQMKSMLTQNQELITETLQNRQNQHSE---EVALREKLTQL 544
QT L EE ++ + + Q ++L E R+ + E E EKL +
Sbjct: 516 QRPGQTWRWQLQEEAQRRRHTLYAKPGQQEQLREEEELQREKRRQEREREYREEEKLQRE 575
Query: 545 TRHKERLEEKIMEQYKSMPSAKKPRGGRNKFLRKAKEMLKRHDSKSSVDQERKNE 709
K R +E+ QY+ + ++ R++ LR+ +++L+ + + QER+ +
Sbjct: 576 EDEKRRRQER-ERQYRELEELRQEEQLRDRKLREEEQLLQEREEERLRRQERERK 629
>sp|Q9PTD7|CING_XENLA Cingulin
Length = 1360
Score = 52.0 bits (123), Expect = 2e-06
Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 11/266 (4%)
Frame = +2
Query: 11 KSINAKLNTSNEELMQYKKEAESLKHLKELIESEKNNLADGARQLISLREENNSLNQEKN 190
+ + KL T ++LM K+E L HL+ + + LA L +E + E +
Sbjct: 516 EQVETKLRTMEDKLMDSKEE---LSHLRAKGGTSPDKLA--------LLKELEEVQDELD 564
Query: 191 EILQNKYKVEAELKSLSQE----KKFLKIELSN-EKELT---SQXXXXXXXXXXXXXXXX 346
E+LQ + K E L+ +E K LK E++N +K+L Q
Sbjct: 565 EVLQIRQKQEELLRQKDRELTALKGALKDEVANHDKDLDRVREQYQNDMQQLRKNMDNVS 624
Query: 347 XXXMRLEA---KIESLSRQTEHLMEENKKLLLQMKSMLTQNQELITETLQNRQNQHSEEV 517
+ LE+ KI + R + +EE+ + Q K M +N+E + T Q E+
Sbjct: 625 QDQLSLESERQKINQVVRNLQRELEESSDEISQWKEMFQKNKEELRSTKQELLQMKLEKE 684
Query: 518 ALREKLTQLTRHKERLEEKIMEQYKSMPSAKKPRGGRNKFLRKAKEMLKRHDSKSSVDQE 697
++L + TR + L + + Q K K L++ ++ LK + SVD++
Sbjct: 685 ESEDELKE-TRDRFSLLQSELAQVKKGSVDPGEVASVRKELQRVQDQLK----QLSVDKQ 739
Query: 698 RKNENSTTPVMQRSRSCGTILGAVEE 775
+ EN + QR R + G ++E
Sbjct: 740 KVEEN----LQQREREMSALKGTLKE 761
Score = 38.5 bits (88), Expect = 0.024
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 10/224 (4%)
Frame = +2
Query: 26 KLNTSNEELMQYKKEAE-SLKHLKE------LIESEKNNLADGA---RQLISLREENNSL 175
+L ++ +EL+Q K E E S LKE L++SE + G+ ++ S+R+E +
Sbjct: 668 ELRSTKQELLQMKLEKEESEDELKETRDRFSLLQSELAQVKKGSVDPGEVASVRKELQRV 727
Query: 176 NQEKNEILQNKYKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXX 355
+ ++ +K KVE L+ +E LK L E
Sbjct: 728 QDQLKQLSVDKQKVEENLQQREREMSALKGTLKEE------------------------- 762
Query: 356 MRLEAKIESLSRQTEHLMEENKKLLLQMKSMLTQNQELITETLQNRQNQHSEEVALREKL 535
+ R+T L E+ + ++ +K +N+ L E+ + Q+Q L++ L
Sbjct: 763 ------VSGRDRETVRLREQLQSEVMHVKK---ENEGLAKES-RRIQDQ------LKQVL 806
Query: 536 TQLTRHKERLEEKIMEQYKSMPSAKKPRGGRNKFLRKAKEMLKR 667
+ RH+E + ++ E + K GR++ K +E L++
Sbjct: 807 LEKQRHEETVHQRERELSVLKGALKDEVSGRDRETEKLRERLEQ 850
Score = 34.3 bits (77), Expect = 0.46
Identities = 51/254 (20%), Positives = 106/254 (41%), Gaps = 22/254 (8%)
Frame = +2
Query: 80 LKHLKELIESEKNNLADGARQLIS--LRE---ENNSLNQEKNEILQNKYKVEAELKSLSQ 244
LK +L+ ++ + +D R++I LRE E+ + ++K IL K L SL
Sbjct: 372 LKSTPDLLRDQQPDGSDPTREMIFGILREGSLESENTLRKKTSILLEK------LPSLQV 425
Query: 245 EKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAKIESLSRQTEHLMEENKK 424
+ I L ++K+ LE K+ L RQ + M++ K
Sbjct: 426 QPGEDTISLGSQKK------------------------ELERKVAELQRQLDDEMKQRMK 461
Query: 425 L----------LLQMKSMLTQNQELITETLQNRQNQHSEEVALREKLTQLTRHKER---- 562
L + +++ L +++E + + + + +E A+ ++L ++ KE+
Sbjct: 462 LETSQGRPKAGMQRLEIELEESKEECSRLKELYEKKKNELSAMSQELMEVRMGKEQVETK 521
Query: 563 ---LEEKIMEQYKSMPSAKKPRGGRNKFLRKAKEMLKRHDSKSSVDQERKNENSTTPVMQ 733
+E+K+M+ + + + G L KE+ + D V Q R+ + + Q
Sbjct: 522 LRTMEDKLMDSKEELSHLRAKGGTSPDKLALLKELEEVQDELDEVLQIRQKQEEL--LRQ 579
Query: 734 RSRSCGTILGAVEE 775
+ R + GA+++
Sbjct: 580 KDRELTALKGALKD 593
>sp|Q80UK7|SAS6_MOUSE Spindle assembly abnormal protein 6 homolog
Length = 654
Score = 51.2 bits (121), Expect = 4e-06
Identities = 58/250 (23%), Positives = 116/250 (46%), Gaps = 18/250 (7%)
Frame = +2
Query: 23 AKLNTSNEELMQYKKEAES-LKHLKELIESEKNNLADGARQLISLREENNSLNQEKNEIL 199
++L +N+EL + K + +S ++ LK + + L ++++SLR EN +L+ E +E
Sbjct: 255 SELEAANKELTERKYKGDSTVRELKAKLAGVEEELQRAKQEVLSLRRENCTLDTECHEKE 314
Query: 200 QNKYKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAKIE 379
++ +++ ++ L QE K + KE +LEA I+
Sbjct: 315 KHINQLQTKVAVLEQEIKDKDQLVLRTKEAFDTIQEQKVALEENGEKNQIQLGKLEATIK 374
Query: 380 SLSRQTEHLMEENKKL---------LLQMKSMLTQNQELI---TETLQNRQNQHSEEVA- 520
SLS + E KKL L++K+ +T QE + E + ++ + S++
Sbjct: 375 SLSAELLKANEIIKKLQGDLKTLMGKLKLKNTVTIQQEKLLAEKEEMLQKERKESQDAGQ 434
Query: 521 -LREKLTQLTRHKERLE---EKIMEQYKSMPSAKKPRGGRNKFLRKAKEMLKRHDSKSSV 688
LR K ++ R +E+LE +K+ E + + + +K NK L + +++++ D+ +
Sbjct: 435 FLRAKEQEVCRLQEQLETTVQKLEESKQLLKNNEKLITWLNKELNE-NQLVRKQDTLGTS 493
Query: 689 DQERKNENST 718
NST
Sbjct: 494 ATPHSTSNST 503
>sp|Q6UVJ0|SAS6_HUMAN Spindle assembly abnormal protein 6 homolog (HsSAS-6)
Length = 657
Score = 51.2 bits (121), Expect = 4e-06
Identities = 63/270 (23%), Positives = 122/270 (45%), Gaps = 18/270 (6%)
Frame = +2
Query: 23 AKLNTSNEELMQYKKEAES-LKHLKELIESEKNNLADGARQLISLREENNSLNQEKNEIL 199
++L +N++L + K + +S ++ LK + + L ++++SLR EN++L+ E +E
Sbjct: 255 SELEAANKDLTERKYKGDSTIRELKAKLSGVEEELQRTKQEVLSLRRENSTLDVECHEKE 314
Query: 200 QNKYKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAKIE 379
++ +++ ++ L QE K + KE +LEA I+
Sbjct: 315 KHVNQLQTKVAVLEQEIKDKDQLVLRTKEAFDTIQEQKVVLEENGEKNQVQLGKLEATIK 374
Query: 380 SLSRQTEHLMEENKKLLLQMKSMLTQNQELITETLQNRQNQHSEEVALREKLTQL----- 544
SLS + E KKL +K+++ + + T T+Q + +E L+++ +L
Sbjct: 375 SLSAELLKANEIIKKLQGDLKTLMGKLKLKNTVTIQQEKLLAEKEEKLQKEQKELQDVGQ 434
Query: 545 -TRHKERLEEKIMEQYKSMPSAKKPRGGRNKFLRKAKEMLKRHDSKSSVDQERKNEN--- 712
R KE+ K+ EQ ++ + KK L ++K++LK ++ + + NEN
Sbjct: 435 SLRIKEQEVCKLQEQLEA--TVKK--------LEESKQLLKNNEKLITWLNKELNENQLV 484
Query: 713 --------STTPVMQRSRSCGTILGAVEEN 778
STTP S + TI + N
Sbjct: 485 RKQDVLGPSTTPPAHSSSN--TIRSGISPN 512
>sp|Q9NYA3|GOGA6_HUMAN Golgin subfamily A member 6 (Golgin linked to PML) (Golgin-like
protein)
Length = 693
Score = 51.2 bits (121), Expect = 4e-06
Identities = 46/227 (20%), Positives = 104/227 (45%), Gaps = 4/227 (1%)
Frame = +2
Query: 32 NTSNEELMQYKKEAESLKHLKELIESEKNNLADGARQLISLREEN-NSLNQEKNEILQNK 208
++S E + ++ +++K + L+ + + + +Q+ R+E + E+ +
Sbjct: 189 SSSCREAVLQRRLQQTIKE-RALLNAHVTQVTESLKQVQLERDEYAKHIKGERARWQERM 247
Query: 209 YKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAKIESLS 388
+K+ E ++L +EKK ++ +EL + + +E L
Sbjct: 248 WKMSVEARTLKEEKKR---DIHRIQELERSLSELKNQMAEPPSLAPPA---VTSVVEQLQ 301
Query: 389 RQTEHLMEENKKLLLQMKSMLTQNQELITETLQNRQNQHSEEVALREKLTQLTRHKERL- 565
+ +HL +E + L +++S + NQ L + + +Q +E LRE+ Q R +ERL
Sbjct: 302 DEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQERLC 361
Query: 566 --EEKIMEQYKSMPSAKKPRGGRNKFLRKAKEMLKRHDSKSSVDQER 700
E++ EQ K++ + + + LRK +E L++ + + ++R
Sbjct: 362 EQNERLREQQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKR 408
Score = 32.0 bits (71), Expect = 2.3
Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 12/235 (5%)
Frame = +2
Query: 77 SLKHLKELIESEKNNLADGARQLISLREENNSLNQEKNEILQNKYKVEAELKSLSQEKKF 256
++ L E IES K QL ++ NN +++ + E L+ + L+ EK
Sbjct: 84 TINQLNENIESLKQQKKQVEHQLEEAKKTNNEIHKAQMEQLET-------INILTLEKAD 136
Query: 257 LKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLEAKIESLSRQTEHLMEENKKLLLQ 436
LK L + K R H EE+K L +
Sbjct: 137 LKTTLYHTK-----------------------------------RAARHFEEESKDLAGR 161
Query: 437 MKSMLTQNQEL-----ITETLQNRQNQHS--EEVALREKLTQLTRHKERLEEKIMEQYKS 595
++ L + QEL T Q +++ S E L+ +L Q + + L + + +S
Sbjct: 162 LQYSLQRIQELERALCAVSTQQQEEDRSSSCREAVLQRRLQQTIKERALLNAHVTQVTES 221
Query: 596 MPSAKKPRGGRNKFLRKAKEMLKRHDSKSSVD-----QERKNENSTTPVMQRSRS 745
+ + R K ++ + + K SV+ +E+K + ++RS S
Sbjct: 222 LKQVQLERDEYAKHIKGERARWQERMWKMSVEARTLKEEKKRDIHRIQELERSLS 276
Score = 30.8 bits (68), Expect = 5.1
Identities = 24/121 (19%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Frame = +2
Query: 356 MRLEAK-IESLSRQTEHLMEENKKLLLQMKSMLTQNQELITETLQNRQNQHSEEVALREK 532
M +EA+ ++ ++ H ++E ++ L ++K+ + + L + + Q L+++
Sbjct: 250 MSVEARTLKEEKKRDIHRIQELERSLSELKNQMAEPPSLAPPAVTSVVEQ------LQDE 303
Query: 533 LTQLTRHKERLEEKIMEQYKSMPSAKKPRGGRNKFLRKAKEMLKRHDSKSSVDQERKNEN 712
L + E LE K+ Q ++ + + + L++ +EML+ +++ +QER E
Sbjct: 304 AKHLRQEVEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQERLCEQ 363
Query: 713 S 715
+
Sbjct: 364 N 364
>sp|P41508|P115_MYCHR Protein P115
Length = 979
Score = 50.8 bits (120), Expect = 5e-06
Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 13/203 (6%)
Frame = +2
Query: 14 SINAKLNTSNEELMQ--------YKKEAESLKHLKELIESEKNNLADGARQLISLREENN 169
SIN+KLN NEEL +K++ E + L +SEK N+ +Q+ +L E N
Sbjct: 623 SINSKLNILNEELNNLKLNASEIFKEQQEDQESLNLSFDSEKLNI---EKQISTLTIELN 679
Query: 170 SLNQEKNEILQNKYKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXX 349
S ++ + K E + + L + K K+ + +T Q
Sbjct: 680 SKKDRLTNLISEQGKGETKKQEL--DAKLRKLNTQHSDSITEQNRAKFLVEQNQKRLSEH 737
Query: 350 XXMRLEAKIESLS-----RQTEHLMEENKKLLLQMKSMLTQNQELITETLQNRQNQHSEE 514
+ LEA E S Q H ++ KK ++K + N E ITE NQ +E
Sbjct: 738 YKLTLEAASEQYSLDLDIEQARHFVDSLKK---ELKELGNVNLEAITEF--EEVNQRYQE 792
Query: 515 VALREKLTQLTRHKERLEEKIME 583
++ + +LT K ++EE I +
Sbjct: 793 --KKQYIEELTTAKSKIEEAISD 813
Score = 35.0 bits (79), Expect = 0.27
Identities = 53/286 (18%), Positives = 116/286 (40%), Gaps = 5/286 (1%)
Frame = +2
Query: 11 KSINAKLNTSNEELMQYKKEAESLKHLKELIESEKNNLADGARQLISLREENN-SLNQEK 187
++I ++ T N + Q K EA S+ ++ E NNL A ++ ++E+ SLN
Sbjct: 601 QTIYNEIETVNSTIQQVKIEANSINSKLNILNEELNNLKLNASEIFKEQQEDQESLNLSF 660
Query: 188 NEILQNKYKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXXXXXXXXXXXMRLE 367
+ K +E ++ +L+ IEL+++K+
Sbjct: 661 DS---EKLNIEKQISTLT-------IELNSKKD--------------------------- 683
Query: 368 AKIESLSRQTEHLMEENKKLLLQMKSMLTQNQELITETLQNRQNQHSEEVALREKLTQLT 547
++ +L + + ++L +++ + TQ+ + ITE Q+ + + + +L+
Sbjct: 684 -RLTNLISEQGKGETKKQELDAKLRKLNTQHSDSITE-------QNRAKFLVEQNQKRLS 735
Query: 548 RHKERLEEKIMEQYKSMPSAKKPRGGRNKFLRKAKEM----LKRHDSKSSVDQERKNENS 715
H + E EQY ++ R + ++ KE+ L+ V+Q + +
Sbjct: 736 EHYKLTLEAASEQYSLDLDIEQARHFVDSLKKELKELGNVNLEAITEFEEVNQRYQEKKQ 795
Query: 716 TTPVMQRSRSCGTILGAVEENKKYSIGDRSSDFQVDNTDTNDIFQQ 853
+ ++S I A+ + K I + + N + N +FQ+
Sbjct: 796 YIEELTTAKS--KIEEAISDLDKIIINKTTEIVNLVNNEFNMVFQK 839
>sp|P53278|YG3A_YEAST Hypothetical 92.7 kDa protein in ASN2-PHB1 intergenic region
Length = 816
Score = 50.4 bits (119), Expect = 6e-06
Identities = 57/259 (22%), Positives = 117/259 (45%), Gaps = 27/259 (10%)
Frame = +2
Query: 8 NKSINAKLNTSNEELMQYKKEAESLKH-LKELIESEKNNLAD---------GARQLISLR 157
NK KL ++ + + ++++ E IE KN L ++L+ L+
Sbjct: 451 NKEYKEKLQDLQNQIDEIENSMKAMREETSEKIEVSKNRLVKKIIDVNAEHNNKKLMILK 510
Query: 158 EENNSLNQ---EKNEILQNKYKVEAELKSLSQEKKFLKIELSNEKELTSQXXXXXXXXXX 328
+ N NQ EKNE+L + V++E+ L+ EK ++ E ++ S
Sbjct: 511 DTENMKNQKLQEKNEVLDKQTNVKSEIDDLNNEKTNVQKEFNDWTTNLSNLSQQLDAQIF 570
Query: 329 XXXXXXXXXMRLEAKIESLSRQTEHLM---EENKKLLLQMKSML--TQNQELITE--TLQ 487
+++ +I++L ++ E L+ EENKKL + +L +N+E + + +
Sbjct: 571 KINQINLKQGKVQNEIDNLEKKKEDLVTQTEENKKLHEKNVQVLESVENKEYLPQINDID 630
Query: 488 NRQNQHSEEVAL-----REKLTQLTRHKERLEE--KIMEQYKSMPSAKKPRGGRNKFLRK 646
N+ + EV + + TQL+ +RLE+ + E+ + + ++ R N L K
Sbjct: 631 NQISSLLNEVTIIKQENANEKTQLSAITKRLEDERRAHEEQLKLEAEERKRKEEN-LLEK 689
Query: 647 AKEMLKRHDSKSSVDQERK 703
++ L+ ++ +D E++
Sbjct: 690 QRQELEEQAHQAQLDHEQQ 708
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,314,719
Number of Sequences: 369166
Number of extensions: 1270395
Number of successful extensions: 7268
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7033
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)