Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_A04
(847 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9V9A7|PCCB_DROME Putative propionyl-CoA carboxylase bet... 349 6e-96
sp|Q9HCC0|MCCC2_HUMAN Methylcrotonoyl-CoA carboxylase beta ... 348 1e-95
sp|P34385|YLPC_CAEEL Hypothetical protein F02A9.4a in chrom... 338 1e-92
sp|Q9LDD8|MCCB_ARATH Methylcrotonoyl-CoA carboxylase beta c... 296 6e-80
sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 1... 134 3e-31
sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (... 119 1e-26
sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, ... 118 2e-26
sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, ... 117 3e-26
sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mi... 117 4e-26
sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mi... 117 5e-26
>sp|Q9V9A7|PCCB_DROME Putative propionyl-CoA carboxylase beta chain, mitochondrial
precursor (PCCase beta subunit) (Propanoyl-CoA:carbon
dioxide ligase beta subunit)
Length = 578
Score = 349 bits (895), Expect = 6e-96
Identities = 168/239 (70%), Positives = 198/239 (82%)
Frame = +1
Query: 1 RTFNMYEVIARIVDGSKMQEFKQLYGETLICGFSRIWGYPVGILANNGVLFSESSLKGAH 180
++F++ EVIARIVDGS+ EFK+LYGETL+CGF++++G+ VGI+ NNGVLFSES+LKGAH
Sbjct: 342 KSFDVREVIARIVDGSRFTEFKKLYGETLVCGFAKLYGHTVGIVGNNGVLFSESALKGAH 401
Query: 181 FIQLCCQRNIPLIFFQHITGFMVGRDAEAGGIAKNGAKLVTAVATANVPKITVIIGNSYG 360
FIQLC QR IPL+F Q+ITGFMVGRDAEA GIAKNGAK+VTAVA ANVPK TVIIG SYG
Sbjct: 402 FIQLCAQRKIPLVFLQNITGFMVGRDAEANGIAKNGAKMVTAVACANVPKFTVIIGGSYG 461
Query: 361 AGNYGMCGRAYGPRFLYMWPNSRIIVMGGEQAANVLVQIQKDQKIREGKEMSIGEESEIR 540
AGNYGMCGRAY PRFLYMWPNSRI VMGG QAANV+ QI +DQ+ R GKE S E +++
Sbjct: 462 AGNYGMCGRAYSPRFLYMWPNSRISVMGGTQAANVMAQITEDQRKRAGKEFSEEEAQKLK 521
Query: 541 NPIISKFEKEGHPYYSSARLWDDGIIDPQDTRSVLALSLSACFNREYSNDSTRFGLFRM 717
PI+ FE EG PYYS+ARLWDDGIIDP +TR +L LSL A N + T+FG+FRM
Sbjct: 522 APIVEMFEAEGSPYYSTARLWDDGIIDPANTRQILGLSLKAALNN--AGQETKFGVFRM 578
>sp|Q9HCC0|MCCC2_HUMAN Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor
(3-Methylcrotonyl-CoA carboxylase 2) (MCCase beta
subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase beta
subunit) (3-Methylcrotonyl-CoA carboxylase
non-biotin-containing subunit)
Length = 563
Score = 348 bits (893), Expect = 1e-95
Identities = 168/239 (70%), Positives = 198/239 (82%)
Frame = +1
Query: 1 RTFNMYEVIARIVDGSKMQEFKQLYGETLICGFSRIWGYPVGILANNGVLFSESSLKGAH 180
R+F++ EVIARIVDGS+ EFK YG+TL+ GF+RI+GYPVGI+ NNGVLFSES+ KG H
Sbjct: 327 RSFDVREVIARIVDGSRFTEFKAFYGDTLVTGFARIFGYPVGIVGNNGVLFSESAKKGTH 386
Query: 181 FIQLCCQRNIPLIFFQHITGFMVGRDAEAGGIAKNGAKLVTAVATANVPKITVIIGNSYG 360
F+QLCCQRNIPL+F Q+ITGFMVGR+ EA GIAK+GAK+V AVA A VPKIT+IIG SYG
Sbjct: 387 FVQLCCQRNIPLLFLQNITGFMVGREYEAEGIAKDGAKMVAAVACAQVPKITLIIGGSYG 446
Query: 361 AGNYGMCGRAYGPRFLYMWPNSRIIVMGGEQAANVLVQIQKDQKIREGKEMSIGEESEIR 540
AGNYGMCGRAY PRFLY+WPN+RI VMGGEQAANVL I KDQ+ REGK+ S +E+ ++
Sbjct: 447 AGNYGMCGRAYSPRFLYIWPNARISVMGGEQAANVLATITKDQRAREGKQFSSADEAALK 506
Query: 541 NPIISKFEKEGHPYYSSARLWDDGIIDPQDTRSVLALSLSACFNREYSNDSTRFGLFRM 717
PII KFE+EG+PYYSSAR+WDDGIIDP DTR VL LS SA N + T FG+FRM
Sbjct: 507 EPIIKKFEEEGNPYYSSARVWDDGIIDPADTRLVLGLSFSAALNAPI--EKTDFGIFRM 563
>sp|P34385|YLPC_CAEEL Hypothetical protein F02A9.4a in chromosome III
Length = 608
Score = 338 bits (867), Expect = 1e-92
Identities = 159/239 (66%), Positives = 199/239 (83%)
Frame = +1
Query: 1 RTFNMYEVIARIVDGSKMQEFKQLYGETLICGFSRIWGYPVGILANNGVLFSESSLKGAH 180
+T+++ EVIARIVDGS+ EFK+ YGETL+ GF+ I+G VGILANNGVLF+ES++KG+H
Sbjct: 372 KTYDVREVIARIVDGSRFHEFKERYGETLVTGFATIYGQRVGILANNGVLFAESAMKGSH 431
Query: 181 FIQLCCQRNIPLIFFQHITGFMVGRDAEAGGIAKNGAKLVTAVATANVPKITVIIGNSYG 360
FI+LCCQR IPL+F Q+ITGFMVGRDAEAGGIAK+GAKLVTAVA A VPKITV++G SYG
Sbjct: 432 FIELCCQRKIPLLFLQNITGFMVGRDAEAGGIAKHGAKLVTAVACAKVPKITVLVGGSYG 491
Query: 361 AGNYGMCGRAYGPRFLYMWPNSRIIVMGGEQAANVLVQIQKDQKIREGKEMSIGEESEIR 540
AGNYGMCGR Y PR+++MWPNSRI VMGGEQAANVL +QK++K REG + + ++ E+R
Sbjct: 492 AGNYGMCGRGYSPRYVFMWPNSRISVMGGEQAANVLSTVQKEKKKREGADWTDQQDLELR 551
Query: 541 NPIISKFEKEGHPYYSSARLWDDGIIDPQDTRSVLALSLSACFNREYSNDSTRFGLFRM 717
P+ KFEKEGHPY++SARLWDDG+IDP+DTR VL L+ + + T+FG+FRM
Sbjct: 552 KPVEEKFEKEGHPYFASARLWDDGVIDPKDTRKVLGLAFQSTLQKPI--PETKFGVFRM 608
>sp|Q9LDD8|MCCB_ARATH Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor
(3-Methylcrotonyl-CoA carboxylase 2) (MCCase beta
subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase beta
subunit)
Length = 587
Score = 296 bits (757), Expect = 6e-80
Identities = 143/237 (60%), Positives = 181/237 (76%)
Frame = +1
Query: 7 FNMYEVIARIVDGSKMQEFKQLYGETLICGFSRIWGYPVGILANNGVLFSESSLKGAHFI 186
F++ +IARIVDGS+ EFK+ YG TL+ GF+RI+G VGI+ NNG+LF+ES+LKGAHFI
Sbjct: 353 FDVRSIIARIVDGSEFDEFKKQYGTTLVTGFARIYGQTVGIIGNNGILFNESALKGAHFI 412
Query: 187 QLCCQRNIPLIFFQHITGFMVGRDAEAGGIAKNGAKLVTAVATANVPKITVIIGNSYGAG 366
+LC QR IPL+F Q+ITGFMVG AEA GIAK GAK+V AV+ A VPKIT+I G S+GAG
Sbjct: 413 ELCSQRKIPLVFLQNITGFMVGSRAEANGIAKAGAKMVMAVSCAKVPKITIITGASFGAG 472
Query: 367 NYGMCGRAYGPRFLYMWPNSRIIVMGGEQAANVLVQIQKDQKIREGKEMSIGEESEIRNP 546
NY MCGRAY P F+++WPN+RI +MGG QAA VL QI++ K R+G + + EE +
Sbjct: 473 NYAMCGRAYSPDFMFIWPNARIGIMGGAQAAGVLTQIERATKKRQGIKWTEEEEEAFKKK 532
Query: 547 IISKFEKEGHPYYSSARLWDDGIIDPQDTRSVLALSLSACFNREYSNDSTRFGLFRM 717
+ +E+E +PYYS+ARLWDDG+IDP DTR VL L LSA NR + TRFG+FRM
Sbjct: 533 TVDAYEREANPYYSTARLWDDGVIDPCDTRKVLGLCLSAALNRPL--EDTRFGVFRM 587
>sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 12S subunit (Transcarboxylase
12S subunit)
Length = 611
Score = 134 bits (337), Expect = 3e-31
Identities = 82/224 (36%), Positives = 123/224 (54%), Gaps = 7/224 (3%)
Frame = +1
Query: 7 FNMYEVIARIVDGSKMQEFKQLYGETLICGFSRIWGYPVGILAN-----NGVLFSESSLK 171
+++ +VIA+IVD E K Y L+ F+R+ G VGI+AN +G L +S K
Sbjct: 291 YDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDK 350
Query: 172 GAHFIQLCCQRNIPLIFFQHITGFMVGRDAEAGGIAKNGAKLVTAVATANVPKITVIIGN 351
A F+ C NIPL+ + GF+ G E GGI ++GAK++ A + A VPKITV++
Sbjct: 351 AAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRK 410
Query: 352 SYGAGNYGMCGRAYGPRFLYMWPNSRIIVMGGEQAANVLVQIQKDQKIREGKEMSIGEES 531
+YG MC R G +Y WP++ I VMG E AANV+ + KE+ ++
Sbjct: 411 AYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFR----------KEIKAADDP 460
Query: 532 E-IRNPIISKFEKE-GHPYYSSARLWDDGIIDPQDTRSVLALSL 657
+ +R I +++ PY ++AR D +IDP DTR +A +L
Sbjct: 461 DAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASAL 504
>sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (PCCase) (Propanoyl-CoA:carbon
dioxide ligase)
Length = 546
Score = 119 bits (298), Expect = 1e-26
Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 6/223 (2%)
Frame = +1
Query: 7 FNMYEVIARIVDGSKMQEFKQLYGETLICGFSRIWGYPVGILANN-----GVLFSESSLK 171
++M EVI R+VD + E L+ ++CGF RI G VG++AN G L ++S K
Sbjct: 309 YDMREVITRLVDEGEFLEVSALFAPNMLCGFGRIEGASVGVVANQPMQLAGTLDIDASEK 368
Query: 172 GAHFIQLCCQRNIPLIFFQHITGFMVGRDAEAGGIAKNGAKLVTAVATANVPKITVIIGN 351
A F++ C NIP++ + GF+ G + I + GAKL+ A A A VP +TVI
Sbjct: 369 AARFVRFCDAFNIPVLTLVDVPGFLPGTGQDWNAIIRRGAKLLYAYAEATVPLVTVITRK 428
Query: 352 SYGAGNYGMCGRAYGPRFLYMWPNSRIIVMGGEQAANVLVQIQKDQKIREGKEMSIGEES 531
+YG M + G WP ++I VMG + AAN+L + Q + G+++
Sbjct: 429 AYGGAYDVMGSKHLGADINLAWPTAQIAVMGAQGAANILYRRQLAEAAERGEDV-----E 483
Query: 532 EIRNPIISKFEKE-GHPYYSSARLWDDGIIDPQDTRSVLALSL 657
+R + ++E +PY ++ R + D +I P TR +A +L
Sbjct: 484 ALRARLQQEYEDTLCNPYVAAERGYVDSVIPPSHTRGHVARAL 526
>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 539
Score = 118 bits (295), Expect = 2e-26
Identities = 77/231 (33%), Positives = 116/231 (50%), Gaps = 5/231 (2%)
Frame = +1
Query: 1 RTFNMYEVIARIVDGSKMQEFKQLYGETLICGFSRIWGYPVGILAN-----NGVLFSESS 165
+ +NM ++I +VD + E Y + +I GF+R+ G VGI+ N +G L SS
Sbjct: 312 KAYNMVDIIHSVVDEREFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSS 371
Query: 166 LKGAHFIQLCCQRNIPLIFFQHITGFMVGRDAEAGGIAKNGAKLVTAVATANVPKITVII 345
+KGA F++ C NIPLI F + GF+ G E GGI ++GAKL+ A A A VPK+TVI
Sbjct: 372 VKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVIT 431
Query: 346 GNSYGAGNYGMCGRAYGPRFLYMWPNSRIIVMGGEQAANVLVQIQKDQKIREGKEMSIGE 525
+YG M + Y WP + I VMG + A + I +G E
Sbjct: 432 RKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEI---------IFKGHENVEAA 482
Query: 526 ESEIRNPIISKFEKEGHPYYSSARLWDDGIIDPQDTRSVLALSLSACFNRE 678
++E EK +P+ ++ R + D II P TR+ + L +++
Sbjct: 483 QAEY-------IEKFANPFPAAVRGFVDDIIQPSSTRARICCDLDVLASKK 526
>sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 541
Score = 117 bits (294), Expect = 3e-26
Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 5/231 (2%)
Frame = +1
Query: 1 RTFNMYEVIARIVDGSKMQEFKQLYGETLICGFSRIWGYPVGILAN-----NGVLFSESS 165
+ +NM ++I ++D + E Y ++ GF+R+ G VGI+ N +G L SS
Sbjct: 314 KAYNMLDIIHAVIDEREFFEIMPSYALNIVVGFARMNGRTVGIVGNQPNVASGCLDINSS 373
Query: 166 LKGAHFIQLCCQRNIPLIFFQHITGFMVGRDAEAGGIAKNGAKLVTAVATANVPKITVII 345
+KGA F++ C NIPLI F + GF+ G E GGI ++GAKL+ A A A VPKITVI
Sbjct: 374 VKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVIT 433
Query: 346 GNSYGAGNYGMCGRAYGPRFLYMWPNSRIIVMGGEQAANVLVQIQKDQKIREGKEMSIGE 525
+YG M + Y WP + I VMG + A ++ + +D + + + +
Sbjct: 434 RKAYGGAYDVMSSKHLLGDTNYAWPTAEIAVMGAKGAVEIIFKGHQDVEAAQAEYV---- 489
Query: 526 ESEIRNPIISKFEKEGHPYYSSARLWDDGIIDPQDTRSVLALSLSACFNRE 678
EK +P+ ++ R + D II P TR+ + L +++
Sbjct: 490 ------------EKFANPFPAAVRGFVDDIIQPSSTRARICCDLEVLASKK 528
>sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 539
Score = 117 bits (293), Expect = 4e-26
Identities = 79/231 (34%), Positives = 115/231 (49%), Gaps = 5/231 (2%)
Frame = +1
Query: 1 RTFNMYEVIARIVDGSKMQEFKQLYGETLICGFSRIWGYPVGILAN-----NGVLFSESS 165
R ++M ++I IVD E Y + +I GF+R+ G VGI+ N +G L SS
Sbjct: 312 RAYDMVDIIYSIVDERDFFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSS 371
Query: 166 LKGAHFIQLCCQRNIPLIFFQHITGFMVGRDAEAGGIAKNGAKLVTAVATANVPKITVII 345
+KGA F++ C NIPLI F + GF+ G E GGI ++GAKL+ A A A VPKITVI
Sbjct: 372 VKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVIT 431
Query: 346 GNSYGAGNYGMCGRAYGPRFLYMWPNSRIIVMGGEQAANVLVQIQKDQKIREGKEMSIGE 525
+YG M + Y WP + I VMG + A + I +G E
Sbjct: 432 RKAYGGAYDVMSSKHLCGDTNYAWPTAEIAVMGAKGAVEI---------IFKGHENVEAA 482
Query: 526 ESEIRNPIISKFEKEGHPYYSSARLWDDGIIDPQDTRSVLALSLSACFNRE 678
++E EK +P+ ++ R + D II P TR+ + L +++
Sbjct: 483 QAEY-------IEKFANPFPAAVRGFVDDIIQPSSTRARICCDLDVLASKK 526
>sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 541
Score = 117 bits (292), Expect = 5e-26
Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 5/231 (2%)
Frame = +1
Query: 1 RTFNMYEVIARIVDGSKMQEFKQLYGETLICGFSRIWGYPVGILAN-----NGVLFSESS 165
+ +NM ++I ++D + E Y + ++ GF+R+ G VGI+ N +G L SS
Sbjct: 314 KAYNMLDIIHAVIDEREFFEIMPNYAKNIVIGFARMNGRTVGIVGNQPNVASGCLDINSS 373
Query: 166 LKGAHFIQLCCQRNIPLIFFQHITGFMVGRDAEAGGIAKNGAKLVTAVATANVPKITVII 345
+KGA F++ C +IPLI F + GF+ G E GGI ++GAKL+ A A A VPKITVI
Sbjct: 374 VKGARFVRFCDAFSIPLITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVIT 433
Query: 346 GNSYGAGNYGMCGRAYGPRFLYMWPNSRIIVMGGEQAANVLVQIQKDQKIREGKEMSIGE 525
+YG M + Y WP + I VMG + A ++ + +D + + + +
Sbjct: 434 RKAYGGAYDVMSSKHLLGDTNYAWPTAEIAVMGAKGAVEIIFKGHEDVEAAQAEYV---- 489
Query: 526 ESEIRNPIISKFEKEGHPYYSSARLWDDGIIDPQDTRSVLALSLSACFNRE 678
EK +P+ ++ R + D II P TR+ + L +++
Sbjct: 490 ------------EKFANPFPAAVRGFVDDIIQPSSTRARICCDLEVLASKK 528
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,249,188
Number of Sequences: 369166
Number of extensions: 1906090
Number of successful extensions: 5308
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5287
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)