Planarian EST Database


Dr_sW_021_A02

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_021_A02
         (746 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18067|RAB7_CANFA  Ras-related protein Rab-7                   304   1e-82
sp|P51150|RAB7_MOUSE  Ras-related protein Rab-7 >gi|1709999|...   304   2e-82
sp|P09527|RAB7_RAT  Ras-related protein Rab-7 (RAS-related p...   303   2e-82
sp|O97572|RAB7_RABIT  Ras-related protein Rab-7                   293   3e-79
sp|Q9C2L8|RAB7_NEUCR  Probable Ras-related protein Rab7           276   4e-74
sp|P36411|RAB7_DICDI  Ras-related protein Rab7                    274   2e-73
sp|O24461|RAB7_PRUAR  Ras-related protein Rab7                    261   1e-69
sp|O94655|YPT7_SCHPO  Ras-related protein ypt7                    259   7e-69
sp|Q9XER8|RAB7_GOSHI  Ras-related protein Rab7                    258   2e-68
sp|P31022|RAB7_PEA  Ras-related protein Rab7                      257   3e-68
>sp|P18067|RAB7_CANFA Ras-related protein Rab-7
          Length = 207

 Score =  304 bits (779), Expect = 1e-82
 Identities = 147/207 (71%), Positives = 169/207 (81%), Gaps = 1/207 (0%)
 Frame = +3

Query: 27  MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 206
           M SR          GDSGVGKTSLMNQYVNKKF+NQYKATIGADFLTK+V+VDDR+VTMQ
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 207 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 386
           IWDTAGQERFQSLGVAFYRGADCCVLV+DVT P TF TLDSWRDEFLIQ+SPRDP++FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query: 387 VVIGNKVDLGERNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENET 566
           VV+GNK+DL  R V T+RAQ WC SK +I YFE SAKEA+NVEQAFQ +AR AL QE E 
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180

Query: 567 DIISEFPDKINL-ANNNPQNQSSSCTC 644
           ++ +EFP+ I L  N+  +  + SC+C
Sbjct: 181 ELYNEFPEPIKLDKNDRAKTSAESCSC 207
>sp|P51150|RAB7_MOUSE Ras-related protein Rab-7
 sp|P51149|RAB7_HUMAN Ras-related protein Rab-7
          Length = 207

 Score =  304 bits (778), Expect = 2e-82
 Identities = 148/207 (71%), Positives = 169/207 (81%), Gaps = 1/207 (0%)
 Frame = +3

Query: 27  MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 206
           M SR          GDSGVGKTSLMNQYVNKKF+NQYKATIGADFLTK+V+VDDR+VTMQ
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 207 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 386
           IWDTAGQERFQSLGVAFYRGADCCVLV+DVT P TF TLDSWRDEFLIQ+SPRDP++FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query: 387 VVIGNKVDLGERNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENET 566
           VV+GNK+DL  R V T+RAQ WC SK +I YFE SAKEA+NVEQAFQ +AR AL QE E 
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180

Query: 567 DIISEFPDKINLANNNPQNQSS-SCTC 644
           ++ +EFP+ I L  N+    S+ SC+C
Sbjct: 181 ELYNEFPEPIKLDKNDRAKASAESCSC 207
>sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related protein P23) (RAS-related
           protein BRL-RAS)
          Length = 207

 Score =  303 bits (777), Expect = 2e-82
 Identities = 148/207 (71%), Positives = 168/207 (81%), Gaps = 1/207 (0%)
 Frame = +3

Query: 27  MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 206
           M SR          GDSGVGKTSLMNQYVNKKF+NQYKATIGADFLTK+V+VDDR+VTMQ
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 207 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 386
           IWDTAGQERFQSLGVAFYRGADCCVLV+DVT P TF TLDSWRDEFLIQ+SPRDP++FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query: 387 VVIGNKVDLGERNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENET 566
           VV+GNK+DL  R V T+RAQ WC SK +I YFE SAKEA+NVEQAFQ +AR AL QE E 
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180

Query: 567 DIISEFPDKINLANNNPQNQSS-SCTC 644
           ++ +EFP+ I L  N     S+ SC+C
Sbjct: 181 ELYNEFPEPIKLDKNERAKASAESCSC 207
>sp|O97572|RAB7_RABIT Ras-related protein Rab-7
          Length = 207

 Score =  293 bits (750), Expect = 3e-79
 Identities = 143/207 (69%), Positives = 166/207 (80%), Gaps = 1/207 (0%)
 Frame = +3

Query: 27  MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 206
           M SR          GDSGVGKTSLMNQYVNKKF+NQYKATIGADFLTK+V+VDDR+VTMQ
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 207 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 386
           IWDTAGQERFQSL VAFYRGADCCVLV+DVT P TF TLDSWR EFLIQ+SPRDP++FPF
Sbjct: 61  IWDTAGQERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPF 120

Query: 387 VVIGNKVDLGERNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENET 566
           VV+GNK+DL  R V T+RAQ W  SK +I YFE SAKEA+NVEQAFQ +AR AL QE E 
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWSYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180

Query: 567 DIISEFPDKINL-ANNNPQNQSSSCTC 644
           ++ +EFP+ + L  N+  +  + SC+C
Sbjct: 181 ELYNEFPEPMKLDKNDRAKTSAESCSC 207
>sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7
          Length = 205

 Score =  276 bits (706), Expect = 4e-74
 Identities = 137/208 (65%), Positives = 162/208 (77%), Gaps = 2/208 (0%)
 Frame = +3

Query: 27  MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 206
           M+SR          GDSGVGKTSLMNQYVNKKF+  YKATIGADFLT++V+VDDR VTMQ
Sbjct: 1   MSSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTREVLVDDRQVTMQ 60

Query: 207 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 386
           +WDTAGQERFQSLGVAFYRGADCCVLVYDV   K+F  LDSWRDEFLIQ+SPRDPD+FPF
Sbjct: 61  LWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFDALDSWRDEFLIQASPRDPDNFPF 120

Query: 387 VVIGNKVDLGE--RNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQEN 560
           VV+GNK+D+ E  R ++T+RA  +CQSKG+I YFE SAKEA+NVEQAF+ +AR AL QE 
Sbjct: 121 VVLGNKIDMEESKRVISTKRAMTFCQSKGNIPYFETSAKEAINVEQAFEVIARNALMQEE 180

Query: 561 ETDIISEFPDKINLANNNPQNQSSSCTC 644
             +   +F D IN+   + +N    C C
Sbjct: 181 SEEFSGDFQDPINI---HIENDRDGCAC 205
>sp|P36411|RAB7_DICDI Ras-related protein Rab7
          Length = 203

 Score =  274 bits (700), Expect = 2e-73
 Identities = 138/205 (67%), Positives = 160/205 (78%), Gaps = 1/205 (0%)
 Frame = +3

Query: 27  MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 206
           MA++          GDSGVGKTSLMNQYVNKKF+NQYKATIGADFLTK+++VDDRVVTMQ
Sbjct: 1   MATKKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQ 60

Query: 207 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 386
           IWDTAGQERFQSLGVAFYRGADCCVL YDV + KTF  LDSWRDEFLIQ+ PRDPD+FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPF 120

Query: 387 VVIGNKVDL-GERNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQENE 563
           VV+GNK+DL  +R V+ +RA  WCQSKG+I YFE SAKEA+NVEQAFQ +AR A+  E+ 
Sbjct: 121 VVLGNKIDLENQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIARNAIKLED- 179

Query: 564 TDIISEFPDKINLANNNPQNQSSSC 638
             ++   P  I +    PQ   S C
Sbjct: 180 -GLVFPIPTNIQVI-PEPQPAKSGC 202
>sp|O24461|RAB7_PRUAR Ras-related protein Rab7
          Length = 207

 Score =  261 bits (667), Expect = 1e-69
 Identities = 129/209 (61%), Positives = 159/209 (76%), Gaps = 3/209 (1%)
 Frame = +3

Query: 27  MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 206
           MASR          GDSGVGKTSLMNQYVN+KF+NQYKATIGADFLTK+V  +DR+ T+Q
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 207 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 386
           IWDTAGQERFQSLGVAFYRGADCCVLVYDV + K+F  L++WR+EFLIQ++P DP++FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPF 120

Query: 387 VVIGNKVDL---GERNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQE 557
           VV+GNK+D+     R V+ ++A+ WC SKG+I YFE SAKE  NV+ AFQ +A+ AL  E
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNE 180

Query: 558 NETDIISEFPDKINLANNNPQNQSSSCTC 644
            E +I    PD I++A    Q +SS C C
Sbjct: 181 PEEEIY--LPDTIDVAGGGRQQRSSGCEC 207
>sp|O94655|YPT7_SCHPO Ras-related protein ypt7
          Length = 205

 Score =  259 bits (661), Expect = 7e-69
 Identities = 126/208 (60%), Positives = 163/208 (78%), Gaps = 2/208 (0%)
 Frame = +3

Query: 27  MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 206
           MA +          G+SGVGKTS+MNQYVN+KF+  YKATIGADFLTK+V+VDD+VVT+Q
Sbjct: 1   MAGKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQ 60

Query: 207 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 386
           +WDTAGQERFQSLGVAFYRGADCCVLVYDV   K+F TLDSWRDEFLIQ+SP +P+ FPF
Sbjct: 61  LWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPF 120

Query: 387 VVIGNKVDLGE--RNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQEN 560
           +++GNKVD+ E  R V+  +A  +CQ++G+I YFE SAKEA+NV++AF+ VA+ AL   +
Sbjct: 121 ILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALENMD 180

Query: 561 ETDIISEFPDKINLANNNPQNQSSSCTC 644
             DI ++F D I+L   + ++Q +SC C
Sbjct: 181 SDDIAADFTDPIHL---DMESQKTSCYC 205
>sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7
          Length = 207

 Score =  258 bits (658), Expect = 2e-68
 Identities = 128/209 (61%), Positives = 159/209 (76%), Gaps = 3/209 (1%)
 Frame = +3

Query: 27  MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 206
           MASR          GDSGVGKTSLMNQYVN+KF+NQYKATIGADFLTK+V  DDR+ T+Q
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQ 60

Query: 207 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 386
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV + K+F  L++WR+EFLIQ+SP DP++FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 387 VVIGNKVDL---GERNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQE 557
           VV+GNKVD+     R V+ ++A+ WC SKG+I YFE SAKE  NV+ AF+ +AR AL  E
Sbjct: 121 VVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIARNALKNE 180

Query: 558 NETDIISEFPDKINLANNNPQNQSSSCTC 644
            E +I    P+ I++A+     +S+ C C
Sbjct: 181 PEEEIY--LPETIDVASGGRPQRSTGCEC 207
>sp|P31022|RAB7_PEA Ras-related protein Rab7
          Length = 206

 Score =  257 bits (656), Expect = 3e-68
 Identities = 127/209 (60%), Positives = 160/209 (76%), Gaps = 3/209 (1%)
 Frame = +3

Query: 27  MASRXXXXXXXXXXGDSGVGKTSLMNQYVNKKFTNQYKATIGADFLTKDVIVDDRVVTMQ 206
           M SR          GDSGVGKTSLMNQYVNKKF+NQYKATIGADFLTK+V  +DR+ T+Q
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 207 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPKTFTTLDSWRDEFLIQSSPRDPDHFPF 386
           IWDTAGQERFQSLGVAFYRGADCCVLVYDV   K+F  L++WR+EFLIQ++P DP++FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPF 120

Query: 387 VVIGNKVDL---GERNVTTRRAQQWCQSKGDIAYFECSAKEALNVEQAFQNVARAALAQE 557
           VVIGNK+D+     R V+ ++A+ WC +KG+I YFE SAKE +NVE+AFQ +A+ AL   
Sbjct: 121 VVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSG 180

Query: 558 NETDIISEFPDKINLANNNPQNQSSSCTC 644
            E ++    PD I++ N++ Q +S+ C C
Sbjct: 181 EEEELY--LPDTIDVGNSS-QPRSTGCEC 206
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,053,410
Number of Sequences: 369166
Number of extensions: 1501928
Number of successful extensions: 4705
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4108
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6776504000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)