Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_P21
(859 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13823|NOG2_HUMAN Nucleolar GTP-binding protein 2 (Autoa... 289 6e-78
sp|Q99LH1|NOG2_MOUSE Nucleolar GTP-binding protein 2 289 8e-78
sp|Q75DA4|NOG2_ASHGO Nucleolar GTP-binding protein 2 287 3e-77
sp|Q6CSP9|NOG2_KLULA Nucleolar GTP-binding protein 2 283 3e-76
sp|O14236|NOG2_SCHPO Nucleolar GTP-binding protein 2 283 6e-76
sp|Q6C036|NOG2_YARLI Nucleolar GTP-binding protein 2 281 2e-75
sp|Q6FWS1|NOG2_CANGA Nucleolar GTP-binding protein 2 278 1e-74
sp|P53742|NOG2_YEAST Nucleolar GTP-binding protein 2 277 3e-74
sp|Q7SHR8|NOG2_NEUCR Nucleolar GTP-binding protein 2 273 4e-73
sp|Q9C3Z4|NOG2_PNECA Nucleolar GTP-binding protein 2 (Bindi... 272 8e-73
>sp|Q13823|NOG2_HUMAN Nucleolar GTP-binding protein 2 (Autoantigen NGP-1)
Length = 731
Score = 289 bits (740), Expect = 6e-78
Identities = 145/272 (53%), Positives = 196/272 (72%), Gaps = 2/272 (0%)
Frame = +3
Query: 3 VFRAGTSNRIWQEVYKVIDSSDVLLYVLDARNPMGMRSPKIELDIRNKQ--KKIIFVLNK 176
+++ G S RIW E+YKVIDSSDV++ VLDAR+PMG RSP IE ++ ++ K +IFVLNK
Sbjct: 197 IYKKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHIETYLKKEKPWKHLIFVLNK 256
Query: 177 VDLVPSGVTRHWEKLLNKEYPTIMFYADVKHPLGKDRLICLLRQFRDKMKDRRQISVGII 356
DLVP+ T+ W +L+++YPT+ F+A + +P GK I LLRQF D++QISVG I
Sbjct: 257 CDLVPTWATKRWVAVLSQDYPTLAFHASLTNPFGKGAFIQLLRQFGKLHTDKKQISVGFI 316
Query: 357 GFPNTGKSSLINTLKGEKVCKVAPIAGETKVWQYISLMKSIDLIDCPGTVTSEKDEKLSE 536
G+PN GKSS+INTL+ +KVC VAPIAGETKVWQYI+LM+ I LIDCPG V +D SE
Sbjct: 317 GYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSED---SE 373
Query: 537 TDLILRNSVRVEKVEDADRHIPAVLNIVNRDVINKLYKINQPWNECEQFLEMVAKSRGRL 716
TD++L+ V+VEK++ + HI AVL + I+K YKI+ W E FLE +A G+L
Sbjct: 374 TDIVLKGVVQVEKIKSPEDHIGAVLERAKPEYISKTYKIDS-WENAEDFLEKLAFRTGKL 432
Query: 717 LKGGQPDIMTVAKEILKDFNTGKLVWYVKPEN 812
LKGG+PD+ TV K +L D+ G++ ++VKP N
Sbjct: 433 LKGGEPDLQTVGKMVLNDWQRGRIPFFVKPPN 464
>sp|Q99LH1|NOG2_MOUSE Nucleolar GTP-binding protein 2
Length = 728
Score = 289 bits (739), Expect = 8e-78
Identities = 145/272 (53%), Positives = 197/272 (72%), Gaps = 2/272 (0%)
Frame = +3
Query: 3 VFRAGTSNRIWQEVYKVIDSSDVLLYVLDARNPMGMRSPKIELDIRNKQ--KKIIFVLNK 176
+++ G S RIW E+YKVIDSSDV++ VLDAR+PMG RSP IE ++ ++ K +IFVLNK
Sbjct: 197 IYKKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHIEAYLKKEKPWKHLIFVLNK 256
Query: 177 VDLVPSGVTRHWEKLLNKEYPTIMFYADVKHPLGKDRLICLLRQFRDKMKDRRQISVGII 356
DLVP+ T+ W +L+++YPT+ F+A + +P GK I LLRQF D++QISVG I
Sbjct: 257 CDLVPTWATKRWVAVLSQDYPTLAFHASLTNPFGKGAFIQLLRQFGKLHTDKKQISVGFI 316
Query: 357 GFPNTGKSSLINTLKGEKVCKVAPIAGETKVWQYISLMKSIDLIDCPGTVTSEKDEKLSE 536
G+PN GKSS+INTL+ +KVC VAPIAGETKVWQYI+LM+ I LIDCPG V +D SE
Sbjct: 317 GYPNVGKSSVINTLRSKKVCNVAPIAGETKVWQYITLMRRIFLIDCPGVVYPSED---SE 373
Query: 537 TDLILRNSVRVEKVEDADRHIPAVLNIVNRDVINKLYKINQPWNECEQFLEMVAKSRGRL 716
TD++L+ V+VEK++ HI AVL + I+K YKI + W E FLE +A G+L
Sbjct: 374 TDIVLKGVVQVEKIKAPQDHIGAVLERAKPEYISKTYKI-ESWENAEDFLEKLALRTGKL 432
Query: 717 LKGGQPDIMTVAKEILKDFNTGKLVWYVKPEN 812
LKGG+PD++TV+K +L D+ G++ ++VKP N
Sbjct: 433 LKGGEPDMLTVSKMVLNDWQRGRIPFFVKPPN 464
>sp|Q75DA4|NOG2_ASHGO Nucleolar GTP-binding protein 2
Length = 502
Score = 287 bits (734), Expect = 3e-77
Identities = 149/282 (52%), Positives = 199/282 (70%), Gaps = 3/282 (1%)
Frame = +3
Query: 3 VFRAGTSNRIWQEVYKVIDSSDVLLYVLDARNPMGMRSPKIELDIRNK--QKKIIFVLNK 176
+F G S RIW E+YKVIDSSDV+++VLDAR+P+G R +E ++ + K +I+VLNK
Sbjct: 201 IFHKGQSKRIWNELYKVIDSSDVVIHVLDARDPLGTRCKSVEEYMKKETPHKHLIYVLNK 260
Query: 177 VDLVPSGVTRHWEKLLNKEYPTIMFYADVKHPLGKDRLICLLRQFRDKMKDRRQISVGII 356
DLVP+ + W K L+K+ PT+ F+A + + GK LI LLRQF KDR+QISVG I
Sbjct: 261 CDLVPTWLAAAWVKHLSKDRPTLAFHASITNSFGKGSLIQLLRQFSQLHKDRQQISVGFI 320
Query: 357 GFPNTGKSSLINTLKGEKVCKVAPIAGETKVWQYISLMKSIDLIDCPGTV-TSEKDEKLS 533
G+PNTGKSS+INTL+ +KVC+VAPI GETKVWQYI+LMK I LIDCPG V S KD +
Sbjct: 321 GYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLMKRIFLIDCPGIVPPSAKD---T 377
Query: 534 ETDLILRNSVRVEKVEDADRHIPAVLNIVNRDVINKLYKINQPWNECEQFLEMVAKSRGR 713
E D++ R VRVE V +++IPAVL R + + Y+I+ W + +F+EM+A+ +GR
Sbjct: 378 EEDILFRGVVRVEHVSHPEQYIPAVLRRCKRHHLERTYEIS-GWADATEFIEMLARKQGR 436
Query: 714 LLKGGQPDIMTVAKEILKDFNTGKLVWYVKPENYDNSKETLK 839
LLKGG+PD VAK++L DFN GK+ W+V P + D ET K
Sbjct: 437 LLKGGEPDETGVAKQVLNDFNRGKIPWFVSPPDRDPQPETSK 478
>sp|Q6CSP9|NOG2_KLULA Nucleolar GTP-binding protein 2
Length = 513
Score = 283 bits (725), Expect = 3e-76
Identities = 148/279 (53%), Positives = 193/279 (69%), Gaps = 3/279 (1%)
Frame = +3
Query: 3 VFRAGTSNRIWQEVYKVIDSSDVLLYVLDARNPMGMRSPKIELDIRNK--QKKIIFVLNK 176
+F G S RIW E+YKVIDSSDV+++VLDAR+P+G R + + N+ K +I+VLNK
Sbjct: 201 IFHKGQSKRIWNELYKVIDSSDVVIHVLDARDPLGTRCKSVTDYMTNETPHKHLIYVLNK 260
Query: 177 VDLVPSGVTRHWEKLLNKEYPTIMFYADVKHPLGKDRLICLLRQFRDKMKDRRQISVGII 356
DLVP+ V W K L+KE PT+ F+A + + GK LI LLRQF KDR QISVG I
Sbjct: 261 CDLVPTWVAAAWVKHLSKERPTLAFHASITNSFGKGSLIQLLRQFSQLHKDRHQISVGFI 320
Query: 357 GFPNTGKSSLINTLKGEKVCKVAPIAGETKVWQYISLMKSIDLIDCPGTV-TSEKDEKLS 533
G+PNTGKSS+INTL+ +KVC+VAPI GETKVWQYI+LMK I LIDCPG V S KD S
Sbjct: 321 GYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLMKRIFLIDCPGIVPPSSKD---S 377
Query: 534 ETDLILRNSVRVEKVEDADRHIPAVLNIVNRDVINKLYKINQPWNECEQFLEMVAKSRGR 713
E D++ R VRVE V +++IP +L R + + Y+I+ W + F+EM+A+ +GR
Sbjct: 378 EEDILFRGVVRVEHVSHPEQYIPGILKRCKRQHLERTYEIS-GWKDSVDFIEMIARKQGR 436
Query: 714 LLKGGQPDIMTVAKEILKDFNTGKLVWYVKPENYDNSKE 830
LLKGG+PD V+K+IL DFN GK+ W+V P D +E
Sbjct: 437 LLKGGEPDESGVSKQILNDFNRGKIPWFVPPPEKDKIEE 475
>sp|O14236|NOG2_SCHPO Nucleolar GTP-binding protein 2
Length = 537
Score = 283 bits (723), Expect = 6e-76
Identities = 144/280 (51%), Positives = 194/280 (69%), Gaps = 2/280 (0%)
Frame = +3
Query: 3 VFRAGTSNRIWQEVYKVIDSSDVLLYVLDARNPMGMRSPKIELDIRNK--QKKIIFVLNK 176
+F G S RIW E+YKVIDSSDVL+ VLDAR+P+G R +E +RN+ K +I VLNK
Sbjct: 197 IFSKGQSKRIWNELYKVIDSSDVLIQVLDARDPVGTRCGTVERYLRNEASHKHMILVLNK 256
Query: 177 VDLVPSGVTRHWEKLLNKEYPTIMFYADVKHPLGKDRLICLLRQFRDKMKDRRQISVGII 356
VDLVP+ V W K+L KEYPTI F+A + + GK LI +LRQF D++QISVG+I
Sbjct: 257 VDLVPTSVAAAWVKILAKEYPTIAFHASINNSFGKGSLIQILRQFASLHSDKKQISVGLI 316
Query: 357 GFPNTGKSSLINTLKGEKVCKVAPIAGETKVWQYISLMKSIDLIDCPGTVTSEKDEKLSE 536
GFPN GKSS+INTL+ +KVC VAPI GETKVWQY++LMK I LIDCPG V ++ S+
Sbjct: 317 GFPNAGKSSIINTLRKKKVCNVAPIPGETKVWQYVALMKRIFLIDCPGIVPPSSND--SD 374
Query: 537 TDLILRNSVRVEKVEDADRHIPAVLNIVNRDVINKLYKINQPWNECEQFLEMVAKSRGRL 716
+L+L+ VRVE V + + +IP VL+ + + Y+I+ WN+ +FL +AK GRL
Sbjct: 375 AELLLKGVVRVENVSNPEAYIPTVLSRCKVKHLERTYEIS-GWNDSTEFLAKLAKKGGRL 433
Query: 717 LKGGQPDIMTVAKEILKDFNTGKLVWYVKPENYDNSKETL 836
LKGG+PD +VAK +L DF GK+ W++ P+ +S + +
Sbjct: 434 LKGGEPDEASVAKMVLNDFMRGKIPWFIGPKGLSSSNDEI 473
>sp|Q6C036|NOG2_YARLI Nucleolar GTP-binding protein 2
Length = 509
Score = 281 bits (718), Expect = 2e-75
Identities = 148/281 (52%), Positives = 196/281 (69%), Gaps = 6/281 (2%)
Frame = +3
Query: 3 VFRAGTSNRIWQEVYKVIDSSDVLLYVLDARNPMGMRSPKIELDIRNK--QKKIIFVLNK 176
+F G S RIW E+YKVIDSSDV+++VLDAR+P+G R +E I+ + K +IFVLNK
Sbjct: 194 IFHKGQSKRIWNELYKVIDSSDVVIHVLDARDPLGTRCTSVEQYIKKEAPHKHLIFVLNK 253
Query: 177 VDLVPSGVTRHWEKLLNKEYPTIMFYADVKHPLGKDRLICLLRQFRDKMKDRRQISVGII 356
DLVP+ V W K L+++YPT+ F+A + + GK LI LLRQ+ DR+QISVG I
Sbjct: 254 CDLVPTWVAAAWVKHLSQDYPTLAFHASITNSFGKGSLIQLLRQYSALHPDRQQISVGFI 313
Query: 357 GFPNTGKSSLINTLKGEKVCKVAPIAGETKVWQYISLMKSIDLIDCPGTV-TSEKDEKLS 533
G+PNTGKSS+INTL+ +KVCK API GETKVWQYI+LMK I LIDCPG V S+KD S
Sbjct: 314 GYPNTGKSSIINTLRKKKVCKTAPIPGETKVWQYITLMKRIFLIDCPGIVPPSQKD---S 370
Query: 534 ETDLILRNSVRVEKVEDADRHIPAVLNIVNRDVINKLYKINQPWNECEQFLEMVAKSRGR 713
ETD++ R VRVE V +++IPA+L + + Y+++ W+ +FLE +A+ GR
Sbjct: 371 ETDILFRGVVRVEHVSYPEQYIPALLERCETKHLERTYEVS-GWSNATEFLEKIARKHGR 429
Query: 714 LLKGGQPDIMTVAKEILKDFNTGKLVWYVKP---ENYDNSK 827
LLKGG+PD +AK IL DFN GK+ W+V P E+ +N K
Sbjct: 430 LLKGGEPDESGIAKLILNDFNRGKIPWFVPPPQAEDMENVK 470
>sp|Q6FWS1|NOG2_CANGA Nucleolar GTP-binding protein 2
Length = 494
Score = 278 bits (712), Expect = 1e-74
Identities = 148/289 (51%), Positives = 199/289 (68%), Gaps = 4/289 (1%)
Frame = +3
Query: 3 VFRAGTSNRIWQEVYKVIDSSDVLLYVLDARNPMGMRSPKIELDIRNK--QKKIIFVLNK 176
+F G S RIW E+YKVIDSSDV+++VLDAR+P+G R +E ++ + K +I+VLNK
Sbjct: 202 IFSKGQSKRIWNELYKVIDSSDVVIHVLDARDPLGTRCKSVEEYMKKETPHKHLIYVLNK 261
Query: 177 VDLVPSGVTRHWEKLLNKEYPTIMFYADVKHPLGKDRLICLLRQFRDKMKDRRQISVGII 356
DLVP+ V W K L+K+ PT+ F+A + + GK LI LLRQF DR+QISVG I
Sbjct: 262 CDLVPTWVAAAWVKHLSKDRPTLAFHASITNSFGKGSLIQLLRQFSQLHTDRKQISVGFI 321
Query: 357 GFPNTGKSSLINTLKGEKVCKVAPIAGETKVWQYISLMKSIDLIDCPGTV-TSEKDEKLS 533
G+PNTGKSS+INTL+ +KVC+VAPI GETKVWQYI+LMK I LIDCPG V S KD S
Sbjct: 322 GYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLMKRIFLIDCPGIVPPSTKD---S 378
Query: 534 ETDLILRNSVRVEKVEDADRHIPAVLNIVNRDVINKLYKINQPWNECEQFLEMVAKSRGR 713
E D++ R VRVE V +++IP VL + + Y+I+ W + F+EM+A+ +GR
Sbjct: 379 EEDILFRGVVRVEHVSHPEQYIPGVLKRCQTKHLERTYEIS-GWKDATDFIEMLARKQGR 437
Query: 714 LLKGGQPDIMTVAKEILKDFNTGKLVWYV-KPENYDNSKETLKDFDNKN 857
LLKGG+PD V+K+IL DFN GK+ W+V PE ++ K L + + K+
Sbjct: 438 LLKGGEPDESGVSKQILNDFNRGKIPWFVIPPEKEEDKKRKLDEEEVKS 486
>sp|P53742|NOG2_YEAST Nucleolar GTP-binding protein 2
Length = 486
Score = 277 bits (708), Expect = 3e-74
Identities = 145/282 (51%), Positives = 195/282 (69%), Gaps = 3/282 (1%)
Frame = +3
Query: 3 VFRAGTSNRIWQEVYKVIDSSDVLLYVLDARNPMGMRSPKIELDIRNK--QKKIIFVLNK 176
+F G S RIW E+YKVIDSSDV+++VLDAR+P+G R +E ++ + K +I+VLNK
Sbjct: 202 IFSKGQSKRIWNELYKVIDSSDVVIHVLDARDPLGTRCKSVEEYMKKETPHKHLIYVLNK 261
Query: 177 VDLVPSGVTRHWEKLLNKEYPTIMFYADVKHPLGKDRLICLLRQFRDKMKDRRQISVGII 356
DLVP+ V W K L+KE PT+ F+A + + GK LI LLRQF DR+QISVG I
Sbjct: 262 CDLVPTWVAAAWVKHLSKERPTLAFHASITNSFGKGSLIQLLRQFSQLHTDRKQISVGFI 321
Query: 357 GFPNTGKSSLINTLKGEKVCKVAPIAGETKVWQYISLMKSIDLIDCPGTV-TSEKDEKLS 533
G+PNTGKSS+INTL+ +KVC+VAPI GETKVWQYI+LMK I LIDCPG V S KD S
Sbjct: 322 GYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLMKRIFLIDCPGIVPPSSKD---S 378
Query: 534 ETDLILRNSVRVEKVEDADRHIPAVLNIVNRDVINKLYKINQPWNECEQFLEMVAKSRGR 713
E D++ R VRVE V +++IP VL + + Y+I+ W + +F+E++A+ +GR
Sbjct: 379 EEDILFRGVVRVEHVTHPEQYIPGVLKRCQVKHLERTYEIS-GWKDATEFIEILARKQGR 437
Query: 714 LLKGGQPDIMTVAKEILKDFNTGKLVWYVKPENYDNSKETLK 839
LLKGG+PD V+K+IL DFN GK+ W+V P + ++ K
Sbjct: 438 LLKGGEPDESGVSKQILNDFNRGKIPWFVLPPEKEGEEKPKK 479
>sp|Q7SHR8|NOG2_NEUCR Nucleolar GTP-binding protein 2
Length = 619
Score = 273 bits (698), Expect = 4e-73
Identities = 140/282 (49%), Positives = 195/282 (69%), Gaps = 3/282 (1%)
Frame = +3
Query: 3 VFRAGTSNRIWQEVYKVIDSSDVLLYVLDARNPMGMRSPKIE--LDIRNKQKKIIFVLNK 176
+F G S RIW E+YKVIDSSDV+L+V+DAR+P+G R +E L K +IFVLNK
Sbjct: 212 IFTKGQSKRIWNELYKVIDSSDVILHVIDARDPLGTRCRHVEKYLATEAPHKHLIFVLNK 271
Query: 177 VDLVPSGVTRHWEKLLNKEYPTIMFYADVKHPLGKDRLICLLRQFRDKMKDRRQISVGII 356
+DLVPS W ++L K++PT + +K+P G+ LI LLRQF KDR+QISVG++
Sbjct: 272 IDLVPSKTAAAWIRVLQKDHPTCAMRSSIKNPFGRGSLIDLLRQFSILHKDRKQISVGLV 331
Query: 357 GFPNTGKSSLINTLKGEKVCKVAPIAGETKVWQYISLMKSIDLIDCPGTVTSEKDEKLSE 536
G+PN GKSS+IN L+G+ V KVAPI GETKVWQY++LM+ I LIDCPG V +++ +
Sbjct: 332 GYPNVGKSSIINALRGKPVAKVAPIPGETKVWQYVTLMRRIYLIDCPGIVPPNQND--TP 389
Query: 537 TDLILRNSVRVEKVEDADRHIPAVLNIVNRDVINKLYKINQPWNECEQFLEMVAKSRGRL 716
DL+LR VRVE V++ +++IPAVLN V + + Y++ + W + FLEM+A+ GRL
Sbjct: 390 QDLLLRGVVRVENVDNPEQYIPAVLNKVKPHHMERTYEL-KGWKDHIHFLEMLARKGGRL 448
Query: 717 LKGGQPDIMTVAKEILKDFNTGKLVWYV-KPENYDNSKETLK 839
LKGG+PD+ VAK +L DF GK+ W+ PE + +T++
Sbjct: 449 LKGGEPDVDGVAKMVLNDFMRGKIPWFTPAPEKEEGETDTME 490
>sp|Q9C3Z4|NOG2_PNECA Nucleolar GTP-binding protein 2 (Binding-inducible GTPase)
Length = 483
Score = 272 bits (696), Expect = 8e-73
Identities = 132/285 (46%), Positives = 197/285 (69%), Gaps = 2/285 (0%)
Frame = +3
Query: 3 VFRAGTSNRIWQEVYKVIDSSDVLLYVLDARNPMGMRSPKIELDIRNKQ--KKIIFVLNK 176
+F GTS RIW E+YK IDSSDV++ +LDARNP+G R +E ++ ++ K +I +LNK
Sbjct: 179 IFSKGTSKRIWNELYKXIDSSDVIIQLLDARNPLGTRCKHVEEYLKKEKPHKHMILLLNK 238
Query: 177 VDLVPSGVTRHWEKLLNKEYPTIMFYADVKHPLGKDRLICLLRQFRDKMKDRRQISVGII 356
DL+P+ TR W K L+KEYPT+ F+A + +P GK LI LLRQF +RRQISVG I
Sbjct: 239 CDLIPTWCTREWIKQLSKEYPTLAFHASINNPFGKGSLIQLLRQFSKLHSNRRQISVGFI 298
Query: 357 GFPNTGKSSLINTLKGEKVCKVAPIAGETKVWQYISLMKSIDLIDCPGTVTSEKDEKLSE 536
G+PNTGKSS+INTL+ +KVC API GETKVWQY+ + I +IDCPG V ++ SE
Sbjct: 299 GYPNTGKSSVINTLRSKKVCNTAPIPGETKVWQYVRMTSKIFMIDCPGIVPPNSND--SE 356
Query: 537 TDLILRNSVRVEKVEDADRHIPAVLNIVNRDVINKLYKINQPWNECEQFLEMVAKSRGRL 716
T++I++ ++R+EKV + +++I A+LN+ + + Y+I+ N+ +F+E++A+ G+L
Sbjct: 357 TEIIIKGALRIEKVSNPEQYIHAILNLCETKHLERTYQISGWENDSTKFIELLARKTGKL 416
Query: 717 LKGGQPDIMTVAKEILKDFNTGKLVWYVKPENYDNSKETLKDFDN 851
LKGG+ D ++AK ++ DF GK+ W++ P +N +K +N
Sbjct: 417 LKGGEVDESSIAKMVINDFIRGKIPWFIAPAQ-ENDPSNIKLSNN 460
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,447,270
Number of Sequences: 369166
Number of extensions: 2366780
Number of successful extensions: 8045
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7916
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)