Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_P17
(615 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50442|GATM_RAT Glycine amidinotransferase, mitochondria... 165 1e-40
sp|Q9D964|GATM_MOUSE Glycine amidinotransferase, mitochondr... 165 1e-40
sp|P50441|GATM_PIG Glycine amidinotransferase (L-arginine:g... 164 2e-40
sp|P50440|GATM_HUMAN Glycine amidinotransferase, mitochondr... 161 1e-39
sp|Q54258|STRB1_STRGA Inosamine-phosphate amidinotransferas... 72 1e-12
sp|Q54264|STRB2_STRGA Putative inosamine-phosphate amidinot... 66 8e-11
sp|P08078|STRB1_STRGR Inosamine-phosphate amidinotransferas... 62 1e-09
sp|P29780|STRB2_STRGR Putative inosamine-phosphate amidinot... 55 1e-07
sp|Q827Q8|CARA_STRAW Carbamoyl-phosphate synthase small cha... 31 2.2
sp|Q6C7D0|TFB3_YARLI RNA polymerase II transcription factor... 30 4.9
>sp|P50442|GATM_RAT Glycine amidinotransferase, mitochondrial precursor
(L-arginine:glycine amidinotransferase) (Transamidinase)
(AT)
Length = 423
Score = 165 bits (417), Expect = 1e-40
Identities = 81/156 (51%), Positives = 108/156 (69%)
Frame = +3
Query: 3 QSHVTNASGIEWMRQHLAEKGIRLHLLNFHDPYAMHIDATFFTVKPGYLIENPEVVNPYA 182
+S VTN GIEWMR+HLA R+H+++F DP MHIDATF + PG ++ NP+
Sbjct: 269 RSQVTNYLGIEWMRRHLAPD-YRVHIISFKDPNPMHIDATFNIIGPGLVLSNPDRPCHQI 327
Query: 183 EHLEKAGWKIVKGPKPADRSDMYEGMSYKWLSMNVLVLDEKRVLVEKREVGMHKMFESIG 362
+ +KAGW IV P P D MS KWLSMNVL+LDEKRV+V+ EV + KMFE +G
Sbjct: 328 DLFKKAGWTIVTPPTPVIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLG 387
Query: 363 MQSIKVDFGHCFAVGGGLHCWTSDVRRKGTLENYFN 470
+ +IKV+ + ++GGG HCWT DVRR+GTL++YF+
Sbjct: 388 ISTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYFD 423
>sp|Q9D964|GATM_MOUSE Glycine amidinotransferase, mitochondrial precursor
(L-arginine:glycine amidinotransferase) (Transamidinase)
(AT)
Length = 423
Score = 165 bits (417), Expect = 1e-40
Identities = 81/156 (51%), Positives = 108/156 (69%)
Frame = +3
Query: 3 QSHVTNASGIEWMRQHLAEKGIRLHLLNFHDPYAMHIDATFFTVKPGYLIENPEVVNPYA 182
+S VTN GIEWMR+HLA R+H+++F DP MHIDATF + PG ++ NP+
Sbjct: 269 RSQVTNYLGIEWMRRHLAPD-YRVHIISFKDPNPMHIDATFNIIGPGLVLSNPDRPCHQI 327
Query: 183 EHLEKAGWKIVKGPKPADRSDMYEGMSYKWLSMNVLVLDEKRVLVEKREVGMHKMFESIG 362
+ +KAGW IV P P D MS KWLSMNVL+LDEKRV+V+ EV + KMFE +G
Sbjct: 328 DLFKKAGWTIVTPPTPVIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLG 387
Query: 363 MQSIKVDFGHCFAVGGGLHCWTSDVRRKGTLENYFN 470
+ +IKV+ + ++GGG HCWT DVRR+GTL++YF+
Sbjct: 388 ISTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYFD 423
>sp|P50441|GATM_PIG Glycine amidinotransferase (L-arginine:glycine amidinotransferase)
(Transamidinase) (AT)
Length = 386
Score = 164 bits (414), Expect = 2e-40
Identities = 80/156 (51%), Positives = 107/156 (68%)
Frame = +3
Query: 3 QSHVTNASGIEWMRQHLAEKGIRLHLLNFHDPYAMHIDATFFTVKPGYLIENPEVVNPYA 182
+S VTN GIEWMR+HLA R+H+++F DP MHIDATF + PG ++ NP+
Sbjct: 232 RSQVTNYMGIEWMRKHLAPD-YRVHIISFKDPNPMHIDATFNIIGPGLVLSNPDRPCHQI 290
Query: 183 EHLEKAGWKIVKGPKPADRSDMYEGMSYKWLSMNVLVLDEKRVLVEKREVGMHKMFESIG 362
+ +KAGW IV P P D MS KWLSMNVL+LDEKRV+V+ EV + KMFE +G
Sbjct: 291 DLFKKAGWTIVTPPIPVIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLG 350
Query: 363 MQSIKVDFGHCFAVGGGLHCWTSDVRRKGTLENYFN 470
+ +IK+ + ++GGG HCWT DVRR+GTL++YF+
Sbjct: 351 ISTIKISIRNANSLGGGFHCWTCDVRRRGTLQSYFD 386
>sp|P50440|GATM_HUMAN Glycine amidinotransferase, mitochondrial precursor
(L-arginine:glycine amidinotransferase) (Transamidinase)
(AT)
Length = 423
Score = 161 bits (408), Expect = 1e-39
Identities = 79/156 (50%), Positives = 107/156 (68%)
Frame = +3
Query: 3 QSHVTNASGIEWMRQHLAEKGIRLHLLNFHDPYAMHIDATFFTVKPGYLIENPEVVNPYA 182
+S VTN GIEWMR+HLA R+H+++F DP MHIDATF + PG ++ NP+
Sbjct: 269 RSQVTNYLGIEWMRRHLAPD-YRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQI 327
Query: 183 EHLEKAGWKIVKGPKPADRSDMYEGMSYKWLSMNVLVLDEKRVLVEKREVGMHKMFESIG 362
+ +KAGW I+ P P D MS KWLSMNVL+LDEKRV+V+ EV + KMFE +G
Sbjct: 328 DLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLG 387
Query: 363 MQSIKVDFGHCFAVGGGLHCWTSDVRRKGTLENYFN 470
+ +IKV+ + ++GGG HCWT DVRR+GTL++Y +
Sbjct: 388 ITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLD 423
>sp|Q54258|STRB1_STRGA Inosamine-phosphate amidinotransferase I (Aminocyclitol
amidinotransferase) (ADT)
Length = 348
Score = 71.6 bits (174), Expect = 1e-12
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Frame = +3
Query: 108 HIDATFFTVKPGYLIENPEVVNPYAEHLEKAGWKIVKGPKPADRSDMYEGMSYK-WLSMN 284
H+D+T ++PG ++ NP VN W+ V P+ D + W+ MN
Sbjct: 227 HVDSTIVPLRPGLVLVNPARVNDDNMPDFLRSWQTVVCPELVDIGFTGDKPHCSVWIGMN 286
Query: 285 VLVLDEKRVLVEKREVGMHKMFESIGMQSIKVDFGHCFAVGGGLHCWTSDVRRKGTLENY 464
+LV+ +V++R+ G+ K+ E G+ + + H +GGG HC T DVRR G+LE Y
Sbjct: 287 LLVVRPDLAVVDRRQTGLIKVLEKHGVDVLPLQLTHSRTLGGGFHCATLDVRRTGSLETY 346
>sp|Q54264|STRB2_STRGA Putative inosamine-phosphate amidinotransferase II (Aminocyclitol
amidinotransferase) (ADT)
Length = 319
Score = 65.9 bits (159), Expect = 8e-11
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Frame = +3
Query: 18 NASGIEWMRQHLAEKGIRLHLLNFHDPYAM-HIDATFFTVKPGYLIENPEVVNPYAEHLE 194
NA G W++ L E R + P+ H D + PG ++ NPE V+ AEH+
Sbjct: 170 NALGARWLQAALGE---RYTVHPCRGPHGSPHGDFAVVPLGPGLILVNPERVD--AEHIP 224
Query: 195 K--AGWKIVKGPKPADRSDMYEGM-SYKWLSMNVLVLDEKRVLVEKREVGMHKMFESIGM 365
WK + P+ D + S W N+LV+ V+V++R+ + ++ E+ G+
Sbjct: 225 PFLRTWKRIVCPELVDPGPPDGAVHSSGWGGSNILVVRPGLVIVDRRQADLMRVLENNGI 284
Query: 366 QSIKVDFGHCFAVGGGLHCWTSDVRRKGTLENY 464
+ + H A+G G H T DVRR GTLE+Y
Sbjct: 285 DVLPLQLTHARALGSGFHRVTVDVRRTGTLESY 317
>sp|P08078|STRB1_STRGR Inosamine-phosphate amidinotransferase I (Aminocyclitol
amidinotransferase) (ADT)
Length = 347
Score = 62.0 bits (149), Expect = 1e-09
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Frame = +3
Query: 108 HIDATFFTVKPGYLIENPEVVNPYAEHLEKAGWKIVKGPKPADRSDMYEGMSYK-WLSMN 284
H+D+T ++PG ++ NP VN W+ + P+ D + W+ MN
Sbjct: 227 HVDSTIVPLRPGLVLTNPSRVNDENMPDFLRSWENITCPELVDIGFTGDKPHCSVWIGMN 286
Query: 285 VLVLDEKRVLVEKREVGMHKMFESIGMQSIKVDFGHCFAVGGGLHCWTSDVRR 443
+LV+ +V++R+ + ++ E GM + + H +GGG HC T DVRR
Sbjct: 287 LLVVRPDLAVVDRRQTALIRLLEKHGMNVLPLQLTHSRTLGGGFHCATLDVRR 339
>sp|P29780|STRB2_STRGR Putative inosamine-phosphate amidinotransferase II (Aminocyclitol
amidinotransferase) (ADT)
Length = 349
Score = 55.5 bits (132), Expect = 1e-07
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Frame = +3
Query: 108 HIDATFFTVKPGYLIENPEVVNPYAEHLEKAGWKIVKGPKPADRSDMYEGMSYK------ 269
HID+T ++PG ++ NP V W+ ++ P A G+ Y
Sbjct: 228 HIDSTLVPLRPGLVLVNPARVTDDNLPGVLRTWQRIECPALA-------GLGYAGDVPHC 280
Query: 270 --WLSMNVLVLDEKRVLVEKREVGMHKMFESIGMQSIKVDFGHCFAVGGGLHCWTSDVRR 443
W+ M++LV+ V+V+ R + ++ E G+ + + H +GGG H T D+RR
Sbjct: 281 STWIGMSLLVVRPGLVVVDSRHRELMRVLERHGVDVLPLKLTHARMLGGGFHGVTLDIRR 340
Query: 444 KGTLENY 464
G LE Y
Sbjct: 341 TGALETY 347
>sp|Q827Q8|CARA_STRAW Carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate
synthetase glutamine chain)
Length = 380
Score = 31.2 bits (69), Expect = 2.2
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Frame = +3
Query: 27 GIEWMRQH-LAEKGIRLHLL----NFHDPYAMHIDATFFTVKPG 143
GI+ M H +AE+GI +H+L D YA++ D FF+ PG
Sbjct: 195 GIKGMTPHRMAERGIEVHVLPATATAEDVYAVNPDGVFFSNGPG 238
>sp|Q6C7D0|TFB3_YARLI RNA polymerase II transcription factor B subunit 3 (RNA polymerase
II transcription factor B p38 subunit) (RNA polymerase
II transcription factor B 38 kDa subunit)
Length = 346
Score = 30.0 bits (66), Expect = 4.9
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Frame = +3
Query: 81 LNFHDPYAMHIDATFFTVKPGYLIENPEVVNPYAEHLEKAGWKIVKGPKPADRSDMYEGM 260
LN ++ Y I+ + FT+ G E + + ++ +I+ K D D YE
Sbjct: 97 LNDYNAYLEKIEDSIFTLLNGTADEKDALTKEIEAYEKEHKAEIIANNKLRDEEDKYEQQ 156
Query: 261 SYKWLSMN-----VLVLDEKRVLVEKREVGMHKMFESI 359
W+ ++ ++E+R E +E ++ +
Sbjct: 157 KEDWMKEQRKANYLMAVEEQRAAQEDKEAAKRELVHQL 194
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,631,012
Number of Sequences: 369166
Number of extensions: 1571716
Number of successful extensions: 4390
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4381
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)