Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_O23
(105 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P37818|ARGI1_SCHPO Arginase 43 3e-04
sp|Q10066|ARGI2_SCHPO Arginase 42 4e-04
sp|Q74ZW4|ARGI_ASHGO Arginase 38 0.008
sp|P33280|ARGI_NEUCR Arginase 37 0.014
sp|P40906|ARGI_COCIM Arginase 36 0.031
sp|Q91553|ARGN1_XENLA Arginase, non-hepatic 1 35 0.069
sp|P00812|ARGI_YEAST Arginase 35 0.069
sp|Q91555|ARGN3_XENLA Arginase, non-hepatic 3 35 0.069
sp|Q91554|ARGN2_XENLA Arginase, non-hepatic 2 35 0.069
sp|Q58DL1|ARGI2_BOVIN Arginase-2, mitochondrial precursor (... 34 0.12
>sp|P37818|ARGI1_SCHPO Arginase
Length = 323
Score = 42.7 bits (99), Expect = 3e-04
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 3 VIQQAIKAVNPNLDRYFHLSFDIDALDPLYAPST 104
V++ A++ +NP R HLSFD+DA DP+ AP+T
Sbjct: 226 VVEMALEHINPGRRRPIHLSFDVDACDPIVAPAT 259
>sp|Q10066|ARGI2_SCHPO Arginase
Length = 323
Score = 42.0 bits (97), Expect = 4e-04
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 3 VIQQAIKAVNPNLDRYFHLSFDIDALDPLYAPST 104
V++ A++ +NP R HLSFD+DA DP+ AP+T
Sbjct: 226 VVEMAMEHINPGKRRPVHLSFDVDACDPIVAPAT 259
>sp|Q74ZW4|ARGI_ASHGO Arginase
Length = 399
Score = 37.7 bits (86), Expect = 0.008
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +3
Query: 3 VIQQAIKAVNPNLDRYFHLSFDIDALDPLYAPST 104
V++ A+ A+NP+ +S+D+DA+DP+Y P+T
Sbjct: 301 VVEMALAAINPDGTGPVMVSYDVDAIDPMYVPAT 334
>sp|P33280|ARGI_NEUCR Arginase
Length = 358
Score = 37.0 bits (84), Expect = 0.014
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 42 DRYFHLSFDIDALDPLYAPST 104
D HLSFD+DALDP++APST
Sbjct: 272 DTPIHLSFDVDALDPMWAPST 292
>sp|P40906|ARGI_COCIM Arginase
Length = 322
Score = 35.8 bits (81), Expect = 0.031
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 3 VIQQAIKAVNPNLDRYFHLSFDIDALDPLYAPST 104
V++ A+ + D HLSFD+DALDP +APST
Sbjct: 228 VVEMALAHIGQ--DTPIHLSFDVDALDPQWAPST 259
>sp|Q91553|ARGN1_XENLA Arginase, non-hepatic 1
Length = 360
Score = 34.7 bits (78), Expect = 0.069
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +3
Query: 42 DRYFHLSFDIDALDPLYAPST 104
DR HLSFDIDA DP AP+T
Sbjct: 245 DRPIHLSFDIDAFDPALAPAT 265
>sp|P00812|ARGI_YEAST Arginase
Length = 333
Score = 34.7 bits (78), Expect = 0.069
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Frame = +3
Query: 3 VIQQAIKAVNP--NLDRYFHLSFDIDALDPLYAPST 104
VI+ A+KAV+P N + S+D+D +DPLY P+T
Sbjct: 233 VIEMAMKAVHPETNGEGPIMCSYDVDGVDPLYIPAT 268
>sp|Q91555|ARGN3_XENLA Arginase, non-hepatic 3
Length = 360
Score = 34.7 bits (78), Expect = 0.069
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +3
Query: 42 DRYFHLSFDIDALDPLYAPST 104
DR HLSFDIDA DP AP+T
Sbjct: 245 DRPIHLSFDIDAFDPALAPAT 265
>sp|Q91554|ARGN2_XENLA Arginase, non-hepatic 2
Length = 360
Score = 34.7 bits (78), Expect = 0.069
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +3
Query: 42 DRYFHLSFDIDALDPLYAPST 104
DR HLSFDIDA DP AP+T
Sbjct: 245 DRPIHLSFDIDAFDPALAPAT 265
>sp|Q58DL1|ARGI2_BOVIN Arginase-2, mitochondrial precursor (Arginase II)
Length = 354
Score = 33.9 bits (76), Expect = 0.12
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 3 VIQQAIKAVNPNLDRYFHLSFDIDALDPLYAPST 104
V++Q + R HLSFDIDA DP AP+T
Sbjct: 230 VMEQTFDLLIGKRQRPIHLSFDIDAFDPTLAPAT 263
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,740,799
Number of Sequences: 369166
Number of extensions: 82152
Number of successful extensions: 367
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 68,354,980
effective HSP length: 9
effective length of database: 66,692,365
effective search space used: 1667309125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)