Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_O20-2
(159 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13283|G3BP_HUMAN Ras-GTPase-activating protein binding ... 44 1e-04
sp|P97855|G3BP_MOUSE Ras-GTPase-activating protein binding ... 42 3e-04
sp|P97379|G3B2_MOUSE Ras-GTPase-activating protein binding ... 39 0.005
sp|Q9UN86|G3B2_HUMAN Ras-GTPase-activating protein binding ... 39 0.005
sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2... 33 0.27
sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2... 33 0.27
sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 (Deleted in ... 30 1.3
sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 (Deleted in ... 30 1.3
sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 (Deleted in ... 30 1.3
sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1... 30 2.3
>sp|Q13283|G3BP_HUMAN Ras-GTPase-activating protein binding protein 1 (GAP SH3-domain
binding protein 1) (G3BP-1) (DNA helicase VIII)
(HDH-VIII)
Length = 466
Score = 43.9 bits (102), Expect = 1e-04
Identities = 21/48 (43%), Positives = 31/48 (64%)
Frame = +1
Query: 1 EKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYY 144
+ YG V ++RI N G LPNFGF+VF + E V+++L N+PI +
Sbjct: 361 QSYGNVVELRI------NSGGKLPNFGFVVFDDSEPVQKVLSNRPIMF 402
>sp|P97855|G3BP_MOUSE Ras-GTPase-activating protein binding protein 1 (GAP SH3-domain
binding protein 1) (G3BP-1) (DNA helicase VIII)
(HDH-VIII)
Length = 465
Score = 42.4 bits (98), Expect = 3e-04
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +1
Query: 1 EKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYY 144
+ +G V ++RI N G LPNFGF+VF + E V+++L N+PI +
Sbjct: 359 QNFGNVVELRI------NSGGKLPNFGFVVFDDSEPVQKVLSNRPIMF 400
>sp|P97379|G3B2_MOUSE Ras-GTPase-activating protein binding protein 2 (GAP SH3-domain
binding protein 2) (G3BP-2)
Length = 482
Score = 38.5 bits (88), Expect = 0.005
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +1
Query: 7 YGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYY 144
+G V ++RI T G LPNFGF+VF + E V+ IL KPI +
Sbjct: 354 FGNVVELRIN---TKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMF 396
>sp|Q9UN86|G3B2_HUMAN Ras-GTPase-activating protein binding protein 2 (GAP SH3-domain
binding protein 2) (G3BP-2)
Length = 482
Score = 38.5 bits (88), Expect = 0.005
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +1
Query: 7 YGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKPIYY 144
+G V ++RI T G LPNFGF+VF + E V+ IL KPI +
Sbjct: 354 FGNVVELRIN---TKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMF 396
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 (Musashi-2)
Length = 346
Score = 32.7 bits (73), Expect = 0.27
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 1 EKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEI 120
E++G V+D + +T+N + FGF+ F N +VVE++
Sbjct: 131 EQFGKVEDAMLMFDKTTNRHR---GFGFVTFENEDVVEKV 167
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 (Musashi-2)
Length = 328
Score = 32.7 bits (73), Expect = 0.27
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 1 EKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEI 120
E++G V+D + +T+N + FGF+ F N +VVE++
Sbjct: 131 EQFGKVEDAMLMFDKTTNRHR---GFGFVTFENEDVVEKV 167
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 (Deleted in azoospermia-associated protein
1)
Length = 407
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 4 KYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKP 135
+YG V D I K +T+N+ + FGF+ F + V +L ++P
Sbjct: 32 QYGEVVDCVIMKDKTTNQSR---GFGFVKFKDPNCVGTVLASRP 72
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 (Deleted in azoospermia-associated protein
1)
Length = 406
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 4 KYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKP 135
+YG V D I K +T+N+ + FGF+ F + V +L ++P
Sbjct: 32 QYGEVVDCVIMKDKTTNQSR---GFGFVKFKDPNCVGTVLASRP 72
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 (Deleted in azoospermia-associated protein
1) (Proline-rich Vg1 mRNA-binding protein)
Length = 360
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 4 KYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEILKNKP 135
+YG V D I K +T+N+ + FGF+ F + V +L ++P
Sbjct: 32 QYGEVVDCVIMKDKTTNQSR---GFGFVKFKDPNCVGTVLASRP 72
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 (Musashi-1)
Length = 362
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 1 EKYGPVKDVRIQKSRTSNEGKPLPNFGFLVFHNHEVVEEI 120
E++G V D + +T+N + FGF+ F + ++VE++
Sbjct: 130 EQFGKVDDAMLMFDKTTNRHR---GFGFVTFESEDIVEKV 166
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.139 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,052,586
Number of Sequences: 369166
Number of extensions: 245106
Number of successful extensions: 700
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 68,354,980
effective HSP length: 25
effective length of database: 63,736,605
effective search space used: 1720888335
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)