Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_O20-1
(732 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22793|TRHY_SHEEP Trichohyalin 34 0.46
sp|P56821|IF39_TOBAC Eukaryotic translation initiation fact... 33 0.78
sp|Q9NG56|TPM_BLAGE Tropomyosin 33 1.0
sp|P45018|HRPA_HAEIN ATP-dependent helicase hrpA homolog 31 3.9
sp|O96764|TPM_CHIKI Tropomyosin (Allergen Chi k 10) 30 5.1
sp|Q09001|STM2A_XENLA Stathmin-2-A (SCG10 protein homolog A) 30 8.6
sp|Q6GAE5|PURQ_STAAS Phosphoribosylformylglycinamidine synt... 30 8.6
sp|Q6GI16|PURQ_STAAR Phosphoribosylformylglycinamidine synt... 30 8.6
sp|P47542|PGK_MYCGE Phosphoglycerate kinase 30 8.6
sp|P99166|PURQ_STAAN Phosphoribosylformylglycinamidine synt... 30 8.6
>sp|P22793|TRHY_SHEEP Trichohyalin
Length = 1549
Score = 33.9 bits (76), Expect = 0.46
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Frame = -2
Query: 731 EKENGNDLTKKELIDRIRQILEQDYQMN-------QRLKEKELRAEEIRRIRKLRMDGKI 573
E++ L K+E + R+ LE++ Q+ +RL E+E R +E+RR + R + ++
Sbjct: 215 ERQEEVQLQKRETQELQRERLEEEQQLQKQKRGLEERLLEQERREQELRRKEQERREQQL 274
Query: 572 SSEEEE 555
E+EE
Sbjct: 275 RQEQEE 280
>sp|P56821|IF39_TOBAC Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b)
Length = 719
Score = 33.1 bits (74), Expect = 0.78
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Frame = -2
Query: 677 QILEQDYQMNQRLKE---------KELRAEEIRRIRKLRMDGKISSEEEEY 552
Q+ EQD + ++LKE K L EE +KLR DG+ S EEEEY
Sbjct: 645 QLSEQDREKRKKLKEEWEAWINEWKRLHEEEKMERQKLR-DGEASDEEEEY 694
>sp|Q9NG56|TPM_BLAGE Tropomyosin
Length = 284
Score = 32.7 bits (73), Expect = 1.0
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 11/67 (16%)
Frame = -2
Query: 719 GNDLTKKELIDRIRQILEQDYQ-----MNQRLKEKELRAEEIRR-IRKL-----RMDGKI 573
GN+L E+ + + E++Y+ +N RLKE E RAE R ++KL R++ ++
Sbjct: 201 GNNLKSLEVSEEKANLREEEYKQQIKTLNTRLKEAEARAEFAERSVQKLQKEVDRLEDEL 260
Query: 572 SSEEEEY 552
E+E+Y
Sbjct: 261 VHEKEKY 267
>sp|P45018|HRPA_HAEIN ATP-dependent helicase hrpA homolog
Length = 1304
Score = 30.8 bits (68), Expect = 3.9
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = -2
Query: 728 KENGNDLTKKELIDRIRQILEQDYQMNQRLKEK 630
+EN N++T ++ ++ QIL YQ+NQRLK K
Sbjct: 1148 RENLNEVTV-DIAQKVEQILTLTYQLNQRLKGK 1179
>sp|O96764|TPM_CHIKI Tropomyosin (Allergen Chi k 10)
Length = 285
Score = 30.4 bits (67), Expect = 5.1
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 11/67 (16%)
Frame = -2
Query: 719 GNDLTKKELIDRIRQILEQDYQ-----MNQRLKEKELRAEEIRR-IRKL-----RMDGKI 573
GN+L E+ + E++Y+ + RLKE E RAE R ++KL R++ ++
Sbjct: 201 GNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAEARAEFAERSVQKLQKEVDRLEDEL 260
Query: 572 SSEEEEY 552
SE+E+Y
Sbjct: 261 VSEKEKY 267
>sp|Q09001|STM2A_XENLA Stathmin-2-A (SCG10 protein homolog A)
Length = 178
Score = 29.6 bits (65), Expect = 8.6
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Frame = -2
Query: 731 EKENGNDLTKKELIDRIRQILE-QDY---QMNQRLKEKELRAEEIRR 603
E N + + +++LI ++ QI E ++Y + +RLKEKE A E+RR
Sbjct: 123 ENNNFSRMAEEKLILKMEQIKENREYYLASLMERLKEKERHAAEVRR 169
>sp|Q6GAE5|PURQ_STAAS Phosphoribosylformylglycinamidine synthase I (FGAM synthase I)
Length = 223
Score = 29.6 bits (65), Expect = 8.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 212 DSHGFQREKSELTIALENETSLIKLYELAEKMVY 111
DSH F EL I + N+T+ LYE EK++Y
Sbjct: 105 DSHLFISRNEELEI-VNNQTAFTNLYEQGEKVIY 137
>sp|Q6GI16|PURQ_STAAR Phosphoribosylformylglycinamidine synthase I (FGAM synthase I)
Length = 223
Score = 29.6 bits (65), Expect = 8.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 212 DSHGFQREKSELTIALENETSLIKLYELAEKMVY 111
DSH F EL I + N+T+ LYE EK++Y
Sbjct: 105 DSHLFISRNEELEI-VNNQTAFTNLYEQGEKVIY 137
>sp|P47542|PGK_MYCGE Phosphoglycerate kinase
Length = 416
Score = 29.6 bits (65), Expect = 8.6
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -2
Query: 728 KENGNDLTKKELIDRIRQILEQDYQMNQRLKEKELRAEEIRRIRKLRMD--GKISSEEEE 555
K N L +KELID +QIL++D L ++ E + + +D KI + +
Sbjct: 251 KATANSLVEKELIDVAKQILDKDTHNKIVLAIDQVMGSEFKDQTGITLDVSDKIQEQYQS 310
Query: 554 YLT 546
Y++
Sbjct: 311 YMS 313
>sp|P99166|PURQ_STAAN Phosphoribosylformylglycinamidine synthase I (FGAM synthase I)
sp|P65904|PURQ_STAAM Phosphoribosylformylglycinamidine synthase I (FGAM synthase I)
Length = 223
Score = 29.6 bits (65), Expect = 8.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 212 DSHGFQREKSELTIALENETSLIKLYELAEKMVY 111
DSH F EL I + N+T+ LYE EK++Y
Sbjct: 105 DSHLFISRNEELEI-VNNQTAFTNLYEQGEKVIY 137
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,425,015
Number of Sequences: 369166
Number of extensions: 659661
Number of successful extensions: 2223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2220
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)