Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_O19
(864 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P10719|ATPB_RAT ATP synthase beta chain, mitochondrial p... 361 1e-99
sp|P00829|ATPB_BOVIN ATP synthase beta chain, mitochondrial... 361 2e-99
sp|P56480|ATPB_MOUSE ATP synthase beta chain, mitochondrial... 360 3e-99
sp|P06576|ATPB_HUMAN ATP synthase beta chain, mitochondrial... 358 8e-99
sp|Q25117|ATPB_HEMPU ATP synthase beta chain, mitochondrial... 358 8e-99
sp|Q9PTY0|ATPB_CYPCA ATP synthase beta chain, mitochondrial... 357 2e-98
sp|P46561|ATPB_CAEEL ATP synthase beta chain, mitochondrial... 353 3e-97
sp|Q05825|ATPB_DROME ATP synthase beta chain, mitochondrial... 345 1e-94
sp|P00830|ATPB_YEAST ATP synthase beta chain, mitochondrial... 325 1e-88
sp|P05038|ATPB_RHORU ATP synthase beta chain 322 1e-87
>sp|P10719|ATPB_RAT ATP synthase beta chain, mitochondrial precursor
Length = 529
Score = 361 bits (927), Expect = 1e-99
Identities = 186/257 (72%), Positives = 209/257 (81%)
Frame = +1
Query: 94 IRVLPNFVENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVK 273
+R P V R+YA +S P+ T + FD LPPILNALEV+
Sbjct: 33 LRTAPAGVHPARDYAAQSSAAPKAGTATGQIVAVIGAVVDV---QFDEGLPPILNALEVQ 89
Query: 274 GRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIG 453
GR RL+LEVAQHLGESTVRTIAMDGTEGL+RGQ+ LD G+ I+IPVGPETLGRIMNVIG
Sbjct: 90 GRESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIG 149
Query: 454 EPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAG 633
EPIDERGPIK+K + IH +AP+F++MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAG
Sbjct: 150 EPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 209
Query: 634 VGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTGVIDLKGDKSKVSLVY 813
VGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI +GVI+LK SKV+LVY
Sbjct: 210 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVY 269
Query: 814 GQMNEPPGARARVALTG 864
GQMNEPPGARARVALTG
Sbjct: 270 GQMNEPPGARARVALTG 286
>sp|P00829|ATPB_BOVIN ATP synthase beta chain, mitochondrial precursor
Length = 528
Score = 361 bits (926), Expect = 2e-99
Identities = 185/257 (71%), Positives = 210/257 (81%)
Frame = +1
Query: 94 IRVLPNFVENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVK 273
+R P ++ R+YA ++ P+ + FD LPPILNALEV+
Sbjct: 33 LRAAPAALQPARDYAAQASPSPKAGATTGRIVAVIGAVVDV---QFDEGLPPILNALEVQ 89
Query: 274 GRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIG 453
GR RL+LEVAQHLGESTVRTIAMDGTEGL+RGQ+ LD G+ IRIPVGPETLGRIMNVIG
Sbjct: 90 GRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIG 149
Query: 454 EPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAG 633
EPIDERGPIK+K ++IH +AP+FV+MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAG
Sbjct: 150 EPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 209
Query: 634 VGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTGVIDLKGDKSKVSLVY 813
VGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI +GVI+LK SKV+LVY
Sbjct: 210 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVY 269
Query: 814 GQMNEPPGARARVALTG 864
GQMNEPPGARARVALTG
Sbjct: 270 GQMNEPPGARARVALTG 286
>sp|P56480|ATPB_MOUSE ATP synthase beta chain, mitochondrial precursor
Length = 529
Score = 360 bits (924), Expect = 3e-99
Identities = 185/257 (71%), Positives = 209/257 (81%)
Frame = +1
Query: 94 IRVLPNFVENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVK 273
+R P V R+YA ++ P+ T + FD LPPILNALEV+
Sbjct: 33 LRAAPAGVHPARDYAAQASAAPKAGTATGRIVAVIGAVVDV---QFDEGLPPILNALEVQ 89
Query: 274 GRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIG 453
GR RL+LEVAQHLGESTVRTIAMDGTEGL+RGQ+ LD G+ I+IPVGPETLGRIMNVIG
Sbjct: 90 GRDSRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIG 149
Query: 454 EPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAG 633
EPIDERGPIK+K + IH +AP+F++MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAG
Sbjct: 150 EPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 209
Query: 634 VGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTGVIDLKGDKSKVSLVY 813
VGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI +GVI+LK SKV+LVY
Sbjct: 210 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVY 269
Query: 814 GQMNEPPGARARVALTG 864
GQMNEPPGARARVALTG
Sbjct: 270 GQMNEPPGARARVALTG 286
>sp|P06576|ATPB_HUMAN ATP synthase beta chain, mitochondrial precursor
Length = 529
Score = 358 bits (920), Expect = 8e-99
Identities = 184/257 (71%), Positives = 208/257 (80%)
Frame = +1
Query: 94 IRVLPNFVENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVK 273
+R P V R+YA ++ P+ + FD LPPILNALEV+
Sbjct: 33 LRAAPTAVHPVRDYAAQTSPSPKAGAATGRIVAVIGAVVDV---QFDEGLPPILNALEVQ 89
Query: 274 GRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIG 453
GR RL+LEVAQHLGESTVRTIAMDGTEGL+RGQ+ LD G+ I+IPVGPETLGRIMNVIG
Sbjct: 90 GRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIG 149
Query: 454 EPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAG 633
EPIDERGPIK+K + IH +AP+F++MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAG
Sbjct: 150 EPIDERGPIKTKQFAPIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 209
Query: 634 VGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTGVIDLKGDKSKVSLVY 813
VGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI +GVI+LK SKV+LVY
Sbjct: 210 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVY 269
Query: 814 GQMNEPPGARARVALTG 864
GQMNEPPGARARVALTG
Sbjct: 270 GQMNEPPGARARVALTG 286
>sp|Q25117|ATPB_HEMPU ATP synthase beta chain, mitochondrial precursor
Length = 523
Score = 358 bits (920), Expect = 8e-99
Identities = 178/212 (83%), Positives = 195/212 (91%)
Frame = +1
Query: 229 FDGDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRI 408
F+ DLPPILNALEV+GRT RL+LEVAQHLGE+TVRTIAMDGTEGLIRGQ+C+D GS I I
Sbjct: 70 FEDDLPPILNALEVQGRTSRLVLEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGSPISI 129
Query: 409 PVGPETLGRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLA 588
PVGPETLGRI+NVIGEPIDERGPI + +S+IH +AP+FV+MS QEIL TGIKVVDLLA
Sbjct: 130 PVGPETLGRIINVIGEPIDERGPIGTDRRSAIHAEAPEFVEMSVNQEILVTGIKVVDLLA 189
Query: 589 PYARGGKIGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTG 768
PYA+GGKIGLFGGAGVGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI G
Sbjct: 190 PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIEGG 249
Query: 769 VIDLKGDKSKVSLVYGQMNEPPGARARVALTG 864
VI LK D SKV+LVYGQMNEPPGARARVALTG
Sbjct: 250 VISLKDDTSKVALVYGQMNEPPGARARVALTG 281
>sp|Q9PTY0|ATPB_CYPCA ATP synthase beta chain, mitochondrial precursor
Length = 518
Score = 357 bits (917), Expect = 2e-98
Identities = 178/212 (83%), Positives = 193/212 (91%)
Frame = +1
Query: 229 FDGDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRI 408
FD DLPPILNALEV GR RL+LEVAQHLGE+TVRTIAMDGTEGL+RGQ+ LD G+ IRI
Sbjct: 65 FDEDLPPILNALEVAGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGAPIRI 124
Query: 409 PVGPETLGRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLA 588
PVGPETLGRIMNVIGEPIDERGPI +K + IH +AP+F DMS EQEIL TGIKVVDLLA
Sbjct: 125 PVGPETLGRIMNVIGEPIDERGPITTKQTAPIHAEAPEFTDMSVEQEILVTGIKVVDLLA 184
Query: 589 PYARGGKIGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTG 768
PYA+GGKIGLFGGAGVGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI +G
Sbjct: 185 PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG 244
Query: 769 VIDLKGDKSKVSLVYGQMNEPPGARARVALTG 864
VI+LK SKV+LVYGQMNEPPGARARVALTG
Sbjct: 245 VINLKDTTSKVALVYGQMNEPPGARARVALTG 276
>sp|P46561|ATPB_CAEEL ATP synthase beta chain, mitochondrial precursor
Length = 538
Score = 353 bits (907), Expect = 3e-97
Identities = 185/265 (69%), Positives = 206/265 (77%), Gaps = 8/265 (3%)
Frame = +1
Query: 94 IRVLPNFVENKRNY--------ATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPP 249
IR+ N VE+K+ A + K +T +N FD +LPP
Sbjct: 31 IRLSSNNVESKKGIHTGVATQQAAAATKVSAKATAANASGRIVAVIGAVVDVQFDENLPP 90
Query: 250 ILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETL 429
ILN LEV GR+PRLILEV+QHLG++ VR IAMDGTEGL+RGQ D G I+IPVGPETL
Sbjct: 91 ILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIKIPVGPETL 150
Query: 430 GRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGK 609
GRIMNVIGEPIDERGPI SK ++IH +AP+FV+MS EQEIL TGIKVVDLLAPYA+GGK
Sbjct: 151 GRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGK 210
Query: 610 IGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTGVIDLKGD 789
IGLFGGAGVGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI GVIDLKG
Sbjct: 211 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIEGGVIDLKGK 270
Query: 790 KSKVSLVYGQMNEPPGARARVALTG 864
SKVSLVYGQMNEPPGARARV LTG
Sbjct: 271 NSKVSLVYGQMNEPPGARARVCLTG 295
>sp|Q05825|ATPB_DROME ATP synthase beta chain, mitochondrial precursor
Length = 505
Score = 345 bits (884), Expect = 1e-94
Identities = 173/212 (81%), Positives = 190/212 (89%)
Frame = +1
Query: 229 FDGDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRI 408
FD +LPPILNALEV R+PRL+LEVAQHLGE+TVRTIAMDGTEGL+RGQ+ LD G IRI
Sbjct: 52 FDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPIRI 111
Query: 409 PVGPETLGRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLA 588
PVG ETLGRI+NVIGEPIDERGPI + ++IH +AP+FV MS EQEIL TGIKVVDLLA
Sbjct: 112 PVGAETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEFVQMSVEQEILVTGIKVVDLLA 171
Query: 589 PYARGGKIGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTG 768
PYA+GGKIGLFGGAGVGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLY+EMI G
Sbjct: 172 PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYNEMIEGG 231
Query: 769 VIDLKGDKSKVSLVYGQMNEPPGARARVALTG 864
VI LK SKV+LVYGQMNEPPGARARVALTG
Sbjct: 232 VISLKDKTSKVALVYGQMNEPPGARARVALTG 263
>sp|P00830|ATPB_YEAST ATP synthase beta chain, mitochondrial precursor
Length = 511
Score = 325 bits (833), Expect = 1e-88
Identities = 165/214 (77%), Positives = 186/214 (86%), Gaps = 1/214 (0%)
Frame = +1
Query: 226 HFD-GDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSI 402
HF+ +LP ILNALE+K +L+LEVAQHLGE+TVRTIAMDGTEGL+RG++ LD G I
Sbjct: 57 HFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPI 116
Query: 403 RIPVGPETLGRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDL 582
+PVG ETLGRI+NVIGEPIDERGPIKSK++ IH D P F + ST EILETGIKVVDL
Sbjct: 117 SVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDL 176
Query: 583 LAPYARGGKIGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMIT 762
LAPYARGGKIGLFGGAGVGKTV I ELINNIA+AHGG+SVFAGVGERTREGNDLY EM
Sbjct: 177 LAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFAGVGERTREGNDLYREMKE 236
Query: 763 TGVIDLKGDKSKVSLVYGQMNEPPGARARVALTG 864
TGVI+L+G+ SKV+LV+GQMNEPPGARARVALTG
Sbjct: 237 TGVINLEGE-SKVALVFGQMNEPPGARARVALTG 269
>sp|P05038|ATPB_RHORU ATP synthase beta chain
Length = 474
Score = 322 bits (824), Expect = 1e-87
Identities = 154/212 (72%), Positives = 178/212 (83%)
Frame = +1
Query: 229 FDGDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRI 408
F+G+LP IL+ALE RL+LEVAQHLGES VRTIAMD TEGL+RGQ+ G I +
Sbjct: 21 FEGELPSILSALETDNHGNRLVLEVAQHLGESVVRTIAMDSTEGLVRGQQVTSTGGPITV 80
Query: 409 PVGPETLGRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLA 588
PVGP+ LGRIMNVIGEP+DERGP+ + + IH+ AP F + +TE EIL TGIKV+DL+A
Sbjct: 81 PVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFAEQATETEILVTGIKVIDLIA 140
Query: 589 PYARGGKIGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTG 768
PY +GGK+GLFGGAGVGKTVLI ELINN+A+ HGGYSVFAGVGERTREGNDLYHEMI G
Sbjct: 141 PYTKGGKVGLFGGAGVGKTVLIQELINNVAKGHGGYSVFAGVGERTREGNDLYHEMIDAG 200
Query: 769 VIDLKGDKSKVSLVYGQMNEPPGARARVALTG 864
+IDL+GDKSKV+LVYGQMNEPPGARARVAL G
Sbjct: 201 IIDLEGDKSKVALVYGQMNEPPGARARVALAG 232
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,553,472
Number of Sequences: 369166
Number of extensions: 1755034
Number of successful extensions: 5618
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5388
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)