Planarian EST Database


Dr_sW_020_O19

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_020_O19
         (864 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10719|ATPB_RAT  ATP synthase beta chain, mitochondrial p...   361   1e-99
sp|P00829|ATPB_BOVIN  ATP synthase beta chain, mitochondrial...   361   2e-99
sp|P56480|ATPB_MOUSE  ATP synthase beta chain, mitochondrial...   360   3e-99
sp|P06576|ATPB_HUMAN  ATP synthase beta chain, mitochondrial...   358   8e-99
sp|Q25117|ATPB_HEMPU  ATP synthase beta chain, mitochondrial...   358   8e-99
sp|Q9PTY0|ATPB_CYPCA  ATP synthase beta chain, mitochondrial...   357   2e-98
sp|P46561|ATPB_CAEEL  ATP synthase beta chain, mitochondrial...   353   3e-97
sp|Q05825|ATPB_DROME  ATP synthase beta chain, mitochondrial...   345   1e-94
sp|P00830|ATPB_YEAST  ATP synthase beta chain, mitochondrial...   325   1e-88
sp|P05038|ATPB_RHORU  ATP synthase beta chain                     322   1e-87
>sp|P10719|ATPB_RAT ATP synthase beta chain, mitochondrial precursor
          Length = 529

 Score =  361 bits (927), Expect = 1e-99
 Identities = 186/257 (72%), Positives = 209/257 (81%)
 Frame = +1

Query: 94  IRVLPNFVENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVK 273
           +R  P  V   R+YA +S   P+  T +                 FD  LPPILNALEV+
Sbjct: 33  LRTAPAGVHPARDYAAQSSAAPKAGTATGQIVAVIGAVVDV---QFDEGLPPILNALEVQ 89

Query: 274 GRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIG 453
           GR  RL+LEVAQHLGESTVRTIAMDGTEGL+RGQ+ LD G+ I+IPVGPETLGRIMNVIG
Sbjct: 90  GRESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIG 149

Query: 454 EPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAG 633
           EPIDERGPIK+K  + IH +AP+F++MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAG
Sbjct: 150 EPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 209

Query: 634 VGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTGVIDLKGDKSKVSLVY 813
           VGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI +GVI+LK   SKV+LVY
Sbjct: 210 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVY 269

Query: 814 GQMNEPPGARARVALTG 864
           GQMNEPPGARARVALTG
Sbjct: 270 GQMNEPPGARARVALTG 286
>sp|P00829|ATPB_BOVIN ATP synthase beta chain, mitochondrial precursor
          Length = 528

 Score =  361 bits (926), Expect = 2e-99
 Identities = 185/257 (71%), Positives = 210/257 (81%)
 Frame = +1

Query: 94  IRVLPNFVENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVK 273
           +R  P  ++  R+YA ++   P+    +                 FD  LPPILNALEV+
Sbjct: 33  LRAAPAALQPARDYAAQASPSPKAGATTGRIVAVIGAVVDV---QFDEGLPPILNALEVQ 89

Query: 274 GRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIG 453
           GR  RL+LEVAQHLGESTVRTIAMDGTEGL+RGQ+ LD G+ IRIPVGPETLGRIMNVIG
Sbjct: 90  GRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIG 149

Query: 454 EPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAG 633
           EPIDERGPIK+K  ++IH +AP+FV+MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAG
Sbjct: 150 EPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 209

Query: 634 VGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTGVIDLKGDKSKVSLVY 813
           VGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI +GVI+LK   SKV+LVY
Sbjct: 210 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVY 269

Query: 814 GQMNEPPGARARVALTG 864
           GQMNEPPGARARVALTG
Sbjct: 270 GQMNEPPGARARVALTG 286
>sp|P56480|ATPB_MOUSE ATP synthase beta chain, mitochondrial precursor
          Length = 529

 Score =  360 bits (924), Expect = 3e-99
 Identities = 185/257 (71%), Positives = 209/257 (81%)
 Frame = +1

Query: 94  IRVLPNFVENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVK 273
           +R  P  V   R+YA ++   P+  T +                 FD  LPPILNALEV+
Sbjct: 33  LRAAPAGVHPARDYAAQASAAPKAGTATGRIVAVIGAVVDV---QFDEGLPPILNALEVQ 89

Query: 274 GRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIG 453
           GR  RL+LEVAQHLGESTVRTIAMDGTEGL+RGQ+ LD G+ I+IPVGPETLGRIMNVIG
Sbjct: 90  GRDSRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIG 149

Query: 454 EPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAG 633
           EPIDERGPIK+K  + IH +AP+F++MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAG
Sbjct: 150 EPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 209

Query: 634 VGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTGVIDLKGDKSKVSLVY 813
           VGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI +GVI+LK   SKV+LVY
Sbjct: 210 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVY 269

Query: 814 GQMNEPPGARARVALTG 864
           GQMNEPPGARARVALTG
Sbjct: 270 GQMNEPPGARARVALTG 286
>sp|P06576|ATPB_HUMAN ATP synthase beta chain, mitochondrial precursor
          Length = 529

 Score =  358 bits (920), Expect = 8e-99
 Identities = 184/257 (71%), Positives = 208/257 (80%)
 Frame = +1

Query: 94  IRVLPNFVENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVK 273
           +R  P  V   R+YA ++   P+    +                 FD  LPPILNALEV+
Sbjct: 33  LRAAPTAVHPVRDYAAQTSPSPKAGAATGRIVAVIGAVVDV---QFDEGLPPILNALEVQ 89

Query: 274 GRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIG 453
           GR  RL+LEVAQHLGESTVRTIAMDGTEGL+RGQ+ LD G+ I+IPVGPETLGRIMNVIG
Sbjct: 90  GRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIG 149

Query: 454 EPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAG 633
           EPIDERGPIK+K  + IH +AP+F++MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAG
Sbjct: 150 EPIDERGPIKTKQFAPIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 209

Query: 634 VGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTGVIDLKGDKSKVSLVY 813
           VGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI +GVI+LK   SKV+LVY
Sbjct: 210 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVY 269

Query: 814 GQMNEPPGARARVALTG 864
           GQMNEPPGARARVALTG
Sbjct: 270 GQMNEPPGARARVALTG 286
>sp|Q25117|ATPB_HEMPU ATP synthase beta chain, mitochondrial precursor
          Length = 523

 Score =  358 bits (920), Expect = 8e-99
 Identities = 178/212 (83%), Positives = 195/212 (91%)
 Frame = +1

Query: 229 FDGDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRI 408
           F+ DLPPILNALEV+GRT RL+LEVAQHLGE+TVRTIAMDGTEGLIRGQ+C+D GS I I
Sbjct: 70  FEDDLPPILNALEVQGRTSRLVLEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGSPISI 129

Query: 409 PVGPETLGRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLA 588
           PVGPETLGRI+NVIGEPIDERGPI +  +S+IH +AP+FV+MS  QEIL TGIKVVDLLA
Sbjct: 130 PVGPETLGRIINVIGEPIDERGPIGTDRRSAIHAEAPEFVEMSVNQEILVTGIKVVDLLA 189

Query: 589 PYARGGKIGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTG 768
           PYA+GGKIGLFGGAGVGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI  G
Sbjct: 190 PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIEGG 249

Query: 769 VIDLKGDKSKVSLVYGQMNEPPGARARVALTG 864
           VI LK D SKV+LVYGQMNEPPGARARVALTG
Sbjct: 250 VISLKDDTSKVALVYGQMNEPPGARARVALTG 281
>sp|Q9PTY0|ATPB_CYPCA ATP synthase beta chain, mitochondrial precursor
          Length = 518

 Score =  357 bits (917), Expect = 2e-98
 Identities = 178/212 (83%), Positives = 193/212 (91%)
 Frame = +1

Query: 229 FDGDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRI 408
           FD DLPPILNALEV GR  RL+LEVAQHLGE+TVRTIAMDGTEGL+RGQ+ LD G+ IRI
Sbjct: 65  FDEDLPPILNALEVAGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGAPIRI 124

Query: 409 PVGPETLGRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLA 588
           PVGPETLGRIMNVIGEPIDERGPI +K  + IH +AP+F DMS EQEIL TGIKVVDLLA
Sbjct: 125 PVGPETLGRIMNVIGEPIDERGPITTKQTAPIHAEAPEFTDMSVEQEILVTGIKVVDLLA 184

Query: 589 PYARGGKIGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTG 768
           PYA+GGKIGLFGGAGVGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI +G
Sbjct: 185 PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG 244

Query: 769 VIDLKGDKSKVSLVYGQMNEPPGARARVALTG 864
           VI+LK   SKV+LVYGQMNEPPGARARVALTG
Sbjct: 245 VINLKDTTSKVALVYGQMNEPPGARARVALTG 276
>sp|P46561|ATPB_CAEEL ATP synthase beta chain, mitochondrial precursor
          Length = 538

 Score =  353 bits (907), Expect = 3e-97
 Identities = 185/265 (69%), Positives = 206/265 (77%), Gaps = 8/265 (3%)
 Frame = +1

Query: 94  IRVLPNFVENKRNY--------ATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPP 249
           IR+  N VE+K+          A  + K    +T +N                FD +LPP
Sbjct: 31  IRLSSNNVESKKGIHTGVATQQAAAATKVSAKATAANASGRIVAVIGAVVDVQFDENLPP 90

Query: 250 ILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETL 429
           ILN LEV GR+PRLILEV+QHLG++ VR IAMDGTEGL+RGQ   D G  I+IPVGPETL
Sbjct: 91  ILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIKIPVGPETL 150

Query: 430 GRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGK 609
           GRIMNVIGEPIDERGPI SK  ++IH +AP+FV+MS EQEIL TGIKVVDLLAPYA+GGK
Sbjct: 151 GRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGK 210

Query: 610 IGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTGVIDLKGD 789
           IGLFGGAGVGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI  GVIDLKG 
Sbjct: 211 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIEGGVIDLKGK 270

Query: 790 KSKVSLVYGQMNEPPGARARVALTG 864
            SKVSLVYGQMNEPPGARARV LTG
Sbjct: 271 NSKVSLVYGQMNEPPGARARVCLTG 295
>sp|Q05825|ATPB_DROME ATP synthase beta chain, mitochondrial precursor
          Length = 505

 Score =  345 bits (884), Expect = 1e-94
 Identities = 173/212 (81%), Positives = 190/212 (89%)
 Frame = +1

Query: 229 FDGDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRI 408
           FD +LPPILNALEV  R+PRL+LEVAQHLGE+TVRTIAMDGTEGL+RGQ+ LD G  IRI
Sbjct: 52  FDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPIRI 111

Query: 409 PVGPETLGRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLA 588
           PVG ETLGRI+NVIGEPIDERGPI +   ++IH +AP+FV MS EQEIL TGIKVVDLLA
Sbjct: 112 PVGAETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEFVQMSVEQEILVTGIKVVDLLA 171

Query: 589 PYARGGKIGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTG 768
           PYA+GGKIGLFGGAGVGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLY+EMI  G
Sbjct: 172 PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYNEMIEGG 231

Query: 769 VIDLKGDKSKVSLVYGQMNEPPGARARVALTG 864
           VI LK   SKV+LVYGQMNEPPGARARVALTG
Sbjct: 232 VISLKDKTSKVALVYGQMNEPPGARARVALTG 263
>sp|P00830|ATPB_YEAST ATP synthase beta chain, mitochondrial precursor
          Length = 511

 Score =  325 bits (833), Expect = 1e-88
 Identities = 165/214 (77%), Positives = 186/214 (86%), Gaps = 1/214 (0%)
 Frame = +1

Query: 226 HFD-GDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSI 402
           HF+  +LP ILNALE+K    +L+LEVAQHLGE+TVRTIAMDGTEGL+RG++ LD G  I
Sbjct: 57  HFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPI 116

Query: 403 RIPVGPETLGRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDL 582
            +PVG ETLGRI+NVIGEPIDERGPIKSK++  IH D P F + ST  EILETGIKVVDL
Sbjct: 117 SVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDL 176

Query: 583 LAPYARGGKIGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMIT 762
           LAPYARGGKIGLFGGAGVGKTV I ELINNIA+AHGG+SVFAGVGERTREGNDLY EM  
Sbjct: 177 LAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFAGVGERTREGNDLYREMKE 236

Query: 763 TGVIDLKGDKSKVSLVYGQMNEPPGARARVALTG 864
           TGVI+L+G+ SKV+LV+GQMNEPPGARARVALTG
Sbjct: 237 TGVINLEGE-SKVALVFGQMNEPPGARARVALTG 269
>sp|P05038|ATPB_RHORU ATP synthase beta chain
          Length = 474

 Score =  322 bits (824), Expect = 1e-87
 Identities = 154/212 (72%), Positives = 178/212 (83%)
 Frame = +1

Query: 229 FDGDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRI 408
           F+G+LP IL+ALE      RL+LEVAQHLGES VRTIAMD TEGL+RGQ+    G  I +
Sbjct: 21  FEGELPSILSALETDNHGNRLVLEVAQHLGESVVRTIAMDSTEGLVRGQQVTSTGGPITV 80

Query: 409 PVGPETLGRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLA 588
           PVGP+ LGRIMNVIGEP+DERGP+ +  +  IH+ AP F + +TE EIL TGIKV+DL+A
Sbjct: 81  PVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFAEQATETEILVTGIKVIDLIA 140

Query: 589 PYARGGKIGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTG 768
           PY +GGK+GLFGGAGVGKTVLI ELINN+A+ HGGYSVFAGVGERTREGNDLYHEMI  G
Sbjct: 141 PYTKGGKVGLFGGAGVGKTVLIQELINNVAKGHGGYSVFAGVGERTREGNDLYHEMIDAG 200

Query: 769 VIDLKGDKSKVSLVYGQMNEPPGARARVALTG 864
           +IDL+GDKSKV+LVYGQMNEPPGARARVAL G
Sbjct: 201 IIDLEGDKSKVALVYGQMNEPPGARARVALAG 232
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,553,472
Number of Sequences: 369166
Number of extensions: 1755034
Number of successful extensions: 5618
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5388
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)