Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_O11
(676 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8INK6|PGPLB_DROME Peptidoglycan-recognition protein-LB ... 164 2e-40
sp|Q96PD5|PGRP2_HUMAN N-acetylmuramoyl-L-alanine amidase pr... 158 1e-38
sp|Q8VCS0|PGRP2_MOUSE N-acetylmuramoyl-L-alanine amidase pr... 154 3e-37
sp|Q866Y3|PGRP2_PIG N-acetylmuramoyl-L-alanine amidase prec... 150 4e-36
sp|Q70PY2|PGSB1_DROME Peptidoglycan-recognition protein-SB1... 132 8e-31
sp|Q70PU2|PGSC1_DROSI Peptidoglycan-recognition protein-SC1... 129 7e-30
sp|Q8SPP7|PGRP_BOVIN Peptidoglycan recognition protein prec... 128 1e-29
sp|O76537|PGRP_TRINI Peptidoglycan recognition protein prec... 128 1e-29
sp|Q70PU1|PGSC2_DROSI Peptidoglycan-recognition protein-SC2... 124 3e-28
sp|O75594|PGRP_HUMAN Peptidoglycan recognition protein prec... 123 4e-28
>sp|Q8INK6|PGPLB_DROME Peptidoglycan-recognition protein-LB precursor
Length = 232
Score = 164 bits (415), Expect = 2e-40
Identities = 74/166 (44%), Positives = 103/166 (62%)
Frame = +1
Query: 133 QFVSREEWGARPPKHIAILPAIPKYVFIHHTFTPAACYDLINCSEAMRSIQKFHMDVRGW 312
+ +SR +WGAR PK + YV IHH++ PA CY +C ++MR +Q FH RGW
Sbjct: 31 RLLSRSDWGARLPKSVEHFQGPAPYVIIHHSYMPAVCYSTPDCMKSMRDMQDFHQLERGW 90
Query: 313 DDIGYSFAIGGDGRVYVGRGWDRVGAHTLGYNTVGLGFVVIGDYRFHIPNEAAIDALRKS 492
+DIGYSF IGGDG +Y GRG++ +GAH YN +G V+IGD+R +P + +DA +
Sbjct: 91 NDIGYSFGIGGDGMIYTGRGFNVIGAHAPKYNDKSVGIVLIGDWRTELPPKQMLDAAKNL 150
Query: 493 ISMGRRLNKIERNFTLKGHRDVRPTECPGEAFYDIIQTWPHYSRQN 630
I+ G I+ + L GHR VR TECPG + I +WPH++ N
Sbjct: 151 IAFGVFKGYIDPAYKLLGHRQVRDTECPGGRLFAEISSWPHFTHIN 196
>sp|Q96PD5|PGRP2_HUMAN N-acetylmuramoyl-L-alanine amidase precursor (Peptidoglycan
recognition protein long) (PGRP-L) (Peptidoglycan
recognition protein 2)
Length = 576
Score = 158 bits (399), Expect = 1e-38
Identities = 71/162 (43%), Positives = 106/162 (65%), Gaps = 3/162 (1%)
Frame = +1
Query: 145 REEWGARPPKHIAILPAIPK-YVFIHHTFTPAA-CYDLINCSEAMRSIQKFHMDVRGWDD 318
R WGA P + L +P ++++HHT+ PA C D C+ MRS+Q++H D +GW D
Sbjct: 385 RCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCTDFTRCAANMRSMQRYHQDTQGWGD 444
Query: 319 IGYSFAIGGDGRVYVGRGWDRVGAHTLGYNTVGLGFVVIGDYRFHIPNEAAIDALRKSI- 495
IGYSF +G DG VY GRGW VGAHTLG+N+ G G ++G+Y +P EAA+ +R ++
Sbjct: 445 IGYSFVVGSDGYVYEGRGWHWVGAHTLGHNSRGFGVAIVGNYTAALPTEAALRTVRDTLP 504
Query: 496 SMGRRLNKIERNFTLKGHRDVRPTECPGEAFYDIIQTWPHYS 621
S R + ++ L GHR + T+CPG+A +D+++TWPH++
Sbjct: 505 SCAVRAGLLRPDYALLGHRQLVRTDCPGDALFDLLRTWPHFT 546
>sp|Q8VCS0|PGRP2_MOUSE N-acetylmuramoyl-L-alanine amidase precursor (Peptidoglycan
recognition protein long) (PGRP-L) (Peptidoglycan
recognition protein 2) (TagL)
Length = 530
Score = 154 bits (388), Expect = 3e-37
Identities = 72/162 (44%), Positives = 104/162 (64%), Gaps = 3/162 (1%)
Frame = +1
Query: 145 REEWGARPPK-HIAILPAIPKYVFIHHTFTPAA-CYDLINCSEAMRSIQKFHMDVRGWDD 318
R WGA P + H L ++++HHT+ PA C +C+ MRS+Q+FH DVR WDD
Sbjct: 365 RCRWGAAPYRGHPTPLRLPLGFLYVHHTYVPAPPCTTFQSCAADMRSMQRFHQDVRKWDD 424
Query: 319 IGYSFAIGGDGRVYVGRGWDRVGAHTLGYNTVGLGFVVIGDYRFHIPNEAAIDALRKSI- 495
IGYSF +G DG +Y GRGW VGAHT GYN+ G G +G+Y +PNEAA++ +R ++
Sbjct: 425 IGYSFVVGSDGYLYQGRGWHWVGAHTRGYNSRGFGVAFVGNYTGSLPNEAALNTVRDALP 484
Query: 496 SMGRRLNKIERNFTLKGHRDVRPTECPGEAFYDIIQTWPHYS 621
S R + ++ L GHR + T CPG A +++++TWPH++
Sbjct: 485 SCAIRAGLLRPDYKLLGHRQLVLTHCPGNALFNLLRTWPHFT 526
>sp|Q866Y3|PGRP2_PIG N-acetylmuramoyl-L-alanine amidase precursor (Peptidoglycan
recognition protein long) (PGRP-L) (Peptidoglycan
recognition protein 2)
Length = 598
Score = 150 bits (378), Expect = 4e-36
Identities = 70/162 (43%), Positives = 105/162 (64%), Gaps = 3/162 (1%)
Frame = +1
Query: 145 REEWGARPPKHIAILPAIPK-YVFIHHTFTPAA-CYDLINCSEAMRSIQKFHMDVRGWDD 318
R WGA P + +P +++IHHT+ PA C D C+ MRS+Q+FH+D +GWDD
Sbjct: 407 RCRWGAAPYRGSPKPLKLPLGFLYIHHTYVPARPCTDFALCAANMRSMQRFHLDTQGWDD 466
Query: 319 IGYSFAIGGDGRVYVGRGWDRVGAHTLGYNTVGLGFVVIGDYRFHIPNEAAIDALRKSI- 495
IGYSF +G DG VY GRGW VGAHT +N+ G G +IG+Y +P+EAA+ A+R +
Sbjct: 467 IGYSFVVGSDGYVYEGRGWHWVGAHTRDHNSRGFGVALIGNYTAELPSEAALRAVRDELP 526
Query: 496 SMGRRLNKIERNFTLKGHRDVRPTECPGEAFYDIIQTWPHYS 621
R ++ ++ L GHR + T+CPG+A +++++TWP ++
Sbjct: 527 HCAVRAGLLQPDYALLGHRQLVRTDCPGDALFNMLRTWPRFN 568
>sp|Q70PY2|PGSB1_DROME Peptidoglycan-recognition protein-SB1 precursor
Length = 190
Score = 132 bits (332), Expect = 8e-31
Identities = 62/170 (36%), Positives = 95/170 (55%)
Frame = +1
Query: 121 SNAIQFVSREEWGARPPKHIAILPAIPKYVFIHHTFTPAACYDLINCSEAMRSIQKFHMD 300
+NA+Q R WGA + + + YV IHH+ P C C +++IQ H
Sbjct: 22 ANALQIEPRSSWGAVSARSPSRISGAVDYVIIHHSDNPNGCSTSEQCKRMIKNIQSDHKG 81
Query: 301 VRGWDDIGYSFAIGGDGRVYVGRGWDRVGAHTLGYNTVGLGFVVIGDYRFHIPNEAAIDA 480
R + DIGY+F + GDG+VY GRG+ G+H+ YN +G V IG++ P+ +
Sbjct: 82 RRNFSDIGYNFIVAGDGKVYEGRGFGLQGSHSPNYNRKSIGIVFIGNFERSAPSAQMLQN 141
Query: 481 LRKSISMGRRLNKIERNFTLKGHRDVRPTECPGEAFYDIIQTWPHYSRQN 630
+ I + ++ ++ N+TL GHR + T CPG+A Y+ I+TWPH+ RQN
Sbjct: 142 AKDLIELAKQRGYLKDNYTLFGHRQTKATSCPGDALYNEIKTWPHW-RQN 190
>sp|Q70PU2|PGSC1_DROSI Peptidoglycan-recognition protein-SC1a/b precursor
Length = 185
Score = 129 bits (324), Expect = 7e-30
Identities = 61/167 (36%), Positives = 89/167 (53%)
Frame = +1
Query: 121 SNAIQFVSREEWGARPPKHIAILPAIPKYVFIHHTFTPAACYDLINCSEAMRSIQKFHMD 300
+ + VS+ EWG R K L Y IHHT + C C+ ++S+Q +HMD
Sbjct: 19 AQGVYVVSKAEWGGRGAKWTVALGNYLSYAIIHHT-AGSYCETRAQCNAVLQSVQAYHMD 77
Query: 301 VRGWDDIGYSFAIGGDGRVYVGRGWDRVGAHTLGYNTVGLGFVVIGDYRFHIPNEAAIDA 480
GW DIGY+F IGGDG VY GRGW+ +GAH +N +G +G+Y + I A
Sbjct: 78 SLGWPDIGYNFLIGGDGNVYEGRGWNNMGAHAAEWNPYSIGISFLGNYNWDTLEPNMISA 137
Query: 481 LRKSISMGRRLNKIERNFTLKGHRDVRPTECPGEAFYDIIQTWPHYS 621
++ ++ ++ + L GHR V TECPG ++ I+ W H+S
Sbjct: 138 AQQLLNDAVNRGQLSSGYILYGHRQVSATECPGTHIWNEIRGWSHWS 184
>sp|Q8SPP7|PGRP_BOVIN Peptidoglycan recognition protein precursor (Peptidoglycan
recognition protein short) (PGRP-S)
(Oligosaccharide-binding protein) (OBP)
Length = 190
Score = 128 bits (322), Expect = 1e-29
Identities = 63/163 (38%), Positives = 94/163 (57%), Gaps = 1/163 (0%)
Frame = +1
Query: 139 VSREEWGARPPKHIAILPAIPKYVFIHHTFTPAACYDLINCSEAMRSIQKFHMDVRGWDD 318
VSR +WGA K L +YV + HT + C +C +++Q +H+ RGW D
Sbjct: 28 VSRGKWGALASKCSQRLRQPVRYVVVSHT-AGSVCNTPASCQRQAQNVQYYHVRERGWCD 86
Query: 319 IGYSFAIGGDGRVYVGRGWDRVGAHT-LGYNTVGLGFVVIGDYRFHIPNEAAIDALRKSI 495
+GY+F IG DG VY GRGW+ +GAH+ +N + +G +G+Y +P +A+ A + +
Sbjct: 87 VGYNFLIGEDGLVYEGRGWNTLGAHSGPTWNPIAIGISFMGNYMHRVPPASALRAAQSLL 146
Query: 496 SMGRRLNKIERNFTLKGHRDVRPTECPGEAFYDIIQTWPHYSR 624
+ G + N+ +KGHRDV+ T PG+ Y IIQ WPHY R
Sbjct: 147 ACGAARGYLTPNYEVKGHRDVQQTLSPGDELYKIIQQWPHYRR 189
>sp|O76537|PGRP_TRINI Peptidoglycan recognition protein precursor
Length = 182
Score = 128 bits (322), Expect = 1e-29
Identities = 63/160 (39%), Positives = 90/160 (56%)
Frame = +1
Query: 139 VSREEWGARPPKHIAILPAIPKYVFIHHTFTPAACYDLINCSEAMRSIQKFHMDVRGWDD 318
V+++EW P H+ L + V I HT T + C C++ +R+IQ +HMD + D
Sbjct: 21 VTKDEWDGLTPIHVEYLARPVELVIIQHTVT-STCNTDAACAQIVRNIQSYHMDNLNYWD 79
Query: 319 IGYSFAIGGDGRVYVGRGWDRVGAHTLGYNTVGLGFVVIGDYRFHIPNEAAIDALRKSIS 498
IG SF IGG+G+VY G GW VGAHT GYN +G IG+Y P + ++DALR +
Sbjct: 80 IGSSFIIGGNGKVYEGAGWLHVGAHTYGYNRKSIGITFIGNYNNDKPTQKSLDALRALLR 139
Query: 499 MGRRLNKIERNFTLKGHRDVRPTECPGEAFYDIIQTWPHY 618
G + N+ + GHR + TE PG Y+ I+ W H+
Sbjct: 140 CGVERGHLTANYHIVGHRQLISTESPGRKLYNEIRRWDHF 179
>sp|Q70PU1|PGSC2_DROSI Peptidoglycan-recognition protein-SC2 precursor
Length = 184
Score = 124 bits (310), Expect = 3e-28
Identities = 62/163 (38%), Positives = 87/163 (53%)
Frame = +1
Query: 130 IQFVSREEWGARPPKHIAILPAIPKYVFIHHTFTPAACYDLINCSEAMRSIQKFHMDVRG 309
+ VS+ EWG R L + Y IHHT C C +++IQ +HMD G
Sbjct: 21 VTIVSKSEWGGRSATSKTSLASYLSYAVIHHT-AGNYCSTKAACITQLKNIQAYHMDSLG 79
Query: 310 WDDIGYSFAIGGDGRVYVGRGWDRVGAHTLGYNTVGLGFVVIGDYRFHIPNEAAIDALRK 489
W DIGY+F IGGDG VY GRGW+ +GAH +N+ +G +G+Y + A I A +
Sbjct: 80 WADIGYNFLIGGDGNVYEGRGWNVMGAHATNWNSKSIGISFLGNYNTNTLTSAQITAAKG 139
Query: 490 SISMGRRLNKIERNFTLKGHRDVRPTECPGEAFYDIIQTWPHY 618
+S +I + L GHR V TECPG ++ I+TW ++
Sbjct: 140 LLSDAVSRGQIVSGYILYGHRQVGSTECPGTNIWNEIRTWSNW 182
>sp|O75594|PGRP_HUMAN Peptidoglycan recognition protein precursor (PGRP-S)
Length = 196
Score = 123 bits (309), Expect = 4e-28
Identities = 62/161 (38%), Positives = 89/161 (55%), Gaps = 1/161 (0%)
Frame = +1
Query: 139 VSREEWGARPPKHIAILPAIPKYVFIHHTFTPAACYDLINCSEAMRSIQKFHMDVRGWDD 318
V R EW A + L +YV + HT ++C +C + R++Q +HM GW D
Sbjct: 34 VPRNEWKALASECAQHLSLPLRYVVVSHT-AGSSCNTPASCQQQARNVQHYHMKTLGWCD 92
Query: 319 IGYSFAIGGDGRVYVGRGWDRVGAHTLG-YNTVGLGFVVIGDYRFHIPNEAAIDALRKSI 495
+GY+F IG DG VY GRGW+ GAH+ +N + +G +G+Y +P AI A + +
Sbjct: 93 VGYNFLIGEDGLVYEGRGWNFTGAHSGHLWNPMSIGISFMGNYMDRVPTPQAIRAAQGLL 152
Query: 496 SMGRRLNKIERNFTLKGHRDVRPTECPGEAFYDIIQTWPHY 618
+ G + N+ LKGHRDV+ T PG Y +IQ WPHY
Sbjct: 153 ACGVAQGALRSNYVLKGHRDVQRTLSPGNQLYHLIQNWPHY 193
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,415,484
Number of Sequences: 369166
Number of extensions: 1448793
Number of successful extensions: 3733
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3709
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5684835195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)